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Volumn 27, Issue 1, 2011, Pages 52-60

Exploring the effects of phylogenetic uncertainty and consensus trees on stratigraphic consistency scores: A new program and a standardized method

Author keywords

[No Author keywords available]

Indexed keywords

EVOLUTIONARY BIOLOGY; FOSSIL RECORD; PALEOBOTANY; PHYLOGENETICS; PHYLOGENY; STANDARDIZATION; TREE;

EID: 78650766455     PISSN: 07483007     EISSN: 10960031     Source Type: Journal    
DOI: 10.1111/j.1096-0031.2010.00320.x     Document Type: Article
Times cited : (11)

References (39)
  • 1
    • 0242370803 scopus 로고    scopus 로고
    • Phylogenetic analysis of Russian Permian dicynodonts (Therapsida: Anomodontia): implications for Permian biostratigraphy and Pangaean biogeography
    • Angielczyk, K.D., Kurkin, A.A., 2003. Phylogenetic analysis of Russian Permian dicynodonts (Therapsida: Anomodontia): implications for Permian biostratigraphy and Pangaean biogeography. Zool. J. Linn. Soc. 139, 157-212.
    • (2003) Zool. J. Linn. Soc. , vol.139 , pp. 157-212
    • Angielczyk, K.D.1    Kurkin, A.A.2
  • 2
    • 84874984004 scopus 로고
    • Testing the quality of the fossil record: paleontological knowledge is improving
    • Benton, M.J., Storrs, G.W., 1994. Testing the quality of the fossil record: paleontological knowledge is improving. Geology 22, 111-114.
    • (1994) Geology , vol.22 , pp. 111-114
    • Benton, M.J.1    Storrs, G.W.2
  • 3
    • 0034411792 scopus 로고    scopus 로고
    • Temporal congruence and the origin of birds
    • Brochu, C.A., Norell, M.A., 2000. Temporal congruence and the origin of birds. J. Vertebr. Paleontol. 20, 197-200.
    • (2000) J. Vertebr. Paleontol. , vol.20 , pp. 197-200
    • Brochu, C.A.1    Norell, M.A.2
  • 4
    • 43549123787 scopus 로고    scopus 로고
    • Phylogeny of Allosauroidea (Dinosauria: Theropoda): comparative analysis and resolution
    • Brusatte, S.L., Sereno, P.C., 2008. Phylogeny of Allosauroidea (Dinosauria: Theropoda): comparative analysis and resolution. J. Syst. Paleontol. 6, 155-182.
    • (2008) J. Syst. Paleontol. , vol.6 , pp. 155-182
    • Brusatte, S.L.1    Sereno, P.C.2
  • 5
    • 33745281891 scopus 로고    scopus 로고
    • The 'fabrosaurid' ornithischian dinosaurs of the Upper Elliot Formation (Lower Jurassic) of South Africa and Lesotho
    • Butler, R.J., 2005. The 'fabrosaurid' ornithischian dinosaurs of the Upper Elliot Formation (Lower Jurassic) of South Africa and Lesotho. Zool. J. Linn. Soc. 145, 175-218.
    • (2005) Zool. J. Linn. Soc. , vol.145 , pp. 175-218
    • Butler, R.J.1
  • 7
  • 8
    • 0024258114 scopus 로고
    • Amniote phylogeny and the importance of fossils
    • Gauthier, J., Kluge, A.G., Rowe, T., 1988. Amniote phylogeny and the importance of fossils. Cladistics 4, 105-209.
    • (1988) Cladistics , vol.4 , pp. 105-209
    • Gauthier, J.1    Kluge, A.G.2    Rowe, T.3
  • 9
    • 45749124657 scopus 로고    scopus 로고
    • TNT, a free program for phylogenetic analysis
    • Goloboff, P.A., Farris, J.S., Nixon, K.C., 2008. TNT, a free program for phylogenetic analysis. Cladistics 24, 774-786.
    • (2008) Cladistics , vol.24 , pp. 774-786
    • Goloboff, P.A.1    Farris, J.S.2    Nixon, K.C.3
  • 10
    • 0030867377 scopus 로고    scopus 로고
    • Congruence between parsimony and stratigraphy: comparisons of three indices
    • Hitchin, R., Benton, M.J., 1997a. Congruence between parsimony and stratigraphy: comparisons of three indices. Paleobiology 23, 20-32.
    • (1997) Paleobiology , vol.23 , pp. 20-32
    • Hitchin, R.1    Benton, M.J.2
  • 11
    • 0031527280 scopus 로고    scopus 로고
    • Stratigraphic indices and tree balance
    • Hitchin, R., Benton, M.J., 1997b. Stratigraphic indices and tree balance. Syst. Biol. 46, 563-569.
    • (1997) Syst. Biol. , vol.46 , pp. 563-569
    • Hitchin, R.1    Benton, M.J.2
  • 12
    • 0028575143 scopus 로고
    • Comparing the stratigraphic record to estimates of phylogeny
    • Huelsenbeck, J.P., 1994. Comparing the stratigraphic record to estimates of phylogeny. Paleobiology 20, 470-483.
    • (1994) Paleobiology , vol.20 , pp. 470-483
    • Huelsenbeck, J.P.1
  • 13
    • 0037495030 scopus 로고    scopus 로고
    • Macroevolutionary consequences of developmental mode in temnopleurid echinoids from the Tertiary of southern Australia
    • Jeffery, C.H., Emlet, R.B., 2003. Macroevolutionary consequences of developmental mode in temnopleurid echinoids from the Tertiary of southern Australia. Evolution 57, 1031-1048.
    • (2003) Evolution , vol.57 , pp. 1031-1048
    • Jeffery, C.H.1    Emlet, R.B.2
  • 14
    • 0035536444 scopus 로고    scopus 로고
    • Phylogeny of Holothuroidea (Echinodermata) inferred from morphology
    • Kerr, A.M., Kim, J., 2001. Phylogeny of Holothuroidea (Echinodermata) inferred from morphology. Zool. J. Linn. Soc. 133, 63-81.
    • (2001) Zool. J. Linn. Soc. , vol.133 , pp. 63-81
    • Kerr, A.M.1    Kim, J.2
  • 15
    • 4544232196 scopus 로고    scopus 로고
    • High-level phylogeny of early Tertiary rodents: dental evidence
    • Marivaux, L., Vianey-Liaud, M., Jaeger, J.-J., 2004. High-level phylogeny of early Tertiary rodents: dental evidence. Zool. J. Linn. Soc. 142, 105-134.
    • (2004) Zool. J. Linn. Soc. , vol.142 , pp. 105-134
    • Marivaux, L.1    Vianey-Liaud, M.2    Jaeger, J.3
  • 16
    • 34249739745 scopus 로고    scopus 로고
    • Fossils, molecules, divergence times, and the origin of lissamphibians
    • Marjanovic, D., Laurin, M., 2007. Fossils, molecules, divergence times, and the origin of lissamphibians. Syst. Biol. 56, 369-388.
    • (2007) Syst. Biol. , vol.56 , pp. 369-388
    • Marjanovic, D.1    Laurin, M.2
  • 17
    • 2942701926 scopus 로고    scopus 로고
    • New species of Eocithara Fisher, 1883 (Mollusca, Gastropoda, Harpidae) from the Early Paleogene with phylogenetic analysis of the Harpidae
    • Merle, D., Pacaud, J.-M., 2003. New species of Eocithara Fisher, 1883 (Mollusca, Gastropoda, Harpidae) from the Early Paleogene with phylogenetic analysis of the Harpidae. Geodiversitas 26, 61-87.
    • (2003) Geodiversitas , vol.26 , pp. 61-87
    • Merle, D.1    Pacaud, J.2
  • 18
    • 0030378088 scopus 로고    scopus 로고
    • On consensus, collapsibility, and clade concordance
    • Nixon, K.C., Carpenter, J.M., 1996. On consensus, collapsibility, and clade concordance. Cladistics 12, 305-322.
    • (1996) Cladistics , vol.12 , pp. 305-322
    • Nixon, K.C.1    Carpenter, J.M.2
  • 19
    • 0027371393 scopus 로고
    • Tree-based approaches to understanding history: comments on ranks, rules, and the quality of the fossil record
    • Norell, M.A., 1993. Tree-based approaches to understanding history: comments on ranks, rules, and the quality of the fossil record. Am. J. Sci. 293, 407-417.
    • (1993) Am. J. Sci. , vol.293 , pp. 407-417
    • Norell, M.A.1
  • 20
    • 0027101576 scopus 로고
    • Congruence between superpositional and phylogenetic patterns: comparing cladistic patterns with fossil records
    • Norell, M.A., Novacek, M.J., 1992. Congruence between superpositional and phylogenetic patterns: comparing cladistic patterns with fossil records. Cladistics 8, 319-337.
    • (1992) Cladistics , vol.8 , pp. 319-337
    • Norell, M.A.1    Novacek, M.J.2
  • 21
    • 23044528947 scopus 로고    scopus 로고
    • The phylogenetic position of cetaceans: further combined data analyses, comparisons with the stratigraphic record and a discussion of character optimization
    • O'Leary, M.A., 2001. The phylogenetic position of cetaceans: further combined data analyses, comparisons with the stratigraphic record and a discussion of character optimization. Am. Zool. 41, 487-506.
    • (2001) Am. Zool. , vol.41 , pp. 487-506
    • O'Leary, M.A.1
  • 22
    • 0035720593 scopus 로고    scopus 로고
    • Comments on the Manhattan stratigraphic measure
    • Pol, D., Norell, M.A., 2001. Comments on the Manhattan stratigraphic measure. Cladistics 17, 285-289.
    • (2001) Cladistics , vol.17 , pp. 285-289
    • Pol, D.1    Norell, M.A.2
  • 23
    • 33747370710 scopus 로고    scopus 로고
    • Uncertainty in the age of fossils and the stratigraphic fit to phylogenies
    • Pol, D., Norell, M.A., 2006. Uncertainty in the age of fossils and the stratigraphic fit to phylogenies. Syst. Biol. 55, 512-521.
    • (2006) Syst. Biol. , vol.55 , pp. 512-521
    • Pol, D.1    Norell, M.A.2
  • 24
    • 1642404569 scopus 로고    scopus 로고
    • Measures of stratigraphic fit to phylogeny and their sensitivity to tree size, shape and scale
    • Pol, D., Norell, M.A., Siddall, M.E., 2004. Measures of stratigraphic fit to phylogeny and their sensitivity to tree size, shape and scale. Cladistics 20, 64-75.
    • (2004) Cladistics , vol.20 , pp. 64-75
    • Pol, D.1    Norell, M.A.2    Siddall, M.E.3
  • 25
    • 0032695469 scopus 로고    scopus 로고
    • Phylogeny of marsileaceous ferns and relationships of the fossil Hydropteris pinnata reconsidered
    • Pryer, K.M., 1999. Phylogeny of marsileaceous ferns and relationships of the fossil Hydropteris pinnata reconsidered. Int. J. Plant Sci. 160, 931-954.
    • (1999) Int. J. Plant Sci. , vol.160 , pp. 931-954
    • Pryer, K.M.1
  • 26
    • 0141634638 scopus 로고    scopus 로고
    • The interrelationships and evolution of basal theropod dinosaurs
    • Rauhut, O.W.M., 2003. The interrelationships and evolution of basal theropod dinosaurs. Spec. Pap. Palaeontol. 69, 1-213.
    • (2003) Spec. Pap. Palaeontol. , vol.69 , pp. 1-213
    • Rauhut, O.W.M.1
  • 27
    • 33947248094 scopus 로고    scopus 로고
    • Phylogeny and origin of Jurassic irregular echinoids (Echinodermata: Echinoidea)
    • Saucede, T., Mooi, R., David, B., 2007. Phylogeny and origin of Jurassic irregular echinoids (Echinodermata: Echinoidea). Geol. Mag. 144, 333-359.
    • (2007) Geol. Mag. , vol.144 , pp. 333-359
    • Saucede, T.1    Mooi, R.2    David, B.3
  • 28
    • 0030336625 scopus 로고    scopus 로고
    • Stratigraphic consistency and the shape of things
    • Siddall, M.E., 1996. Stratigraphic consistency and the shape of things. Syst. Biol. 45, 111-115.
    • (1996) Syst. Biol. , vol.45 , pp. 111-115
    • Siddall, M.E.1
  • 29
    • 0006432101 scopus 로고    scopus 로고
    • Stratigraphic indices in the balance: a reply to Hitchin and Benton
    • Siddall, M.E., 1997. Stratigraphic indices in the balance: a reply to Hitchin and Benton. Syst. Biol. 46, 569-573.
    • (1997) Syst. Biol. , vol.46 , pp. 569-573
    • Siddall, M.E.1
  • 30
    • 0031788712 scopus 로고    scopus 로고
    • Stratigraphic fit to phylogenies: a proposed solution
    • Siddall, M.E., 1998. Stratigraphic fit to phylogenies: a proposed solution. Cladistics 14, 201-208.
    • (1998) Cladistics , vol.14 , pp. 201-208
    • Siddall, M.E.1
  • 31
    • 0002529938 scopus 로고
    • Phylogenetic Analysis of DNA Sequences
    • In: Miyamoto, M.M., Cracraft, J. (Eds.), Oxford University Press, New York -
    • Swofford, D.L. 1991. When are phylogeny estimates from molecular and morphological data incongruent? In: Miyamoto, M.M., Cracraft, J. (Eds.), Phylogenetic Analysis of DNA Sequences. Oxford University Press, New York, pp. 295-333.
    • (1991) When are phylogeny estimates from molecular and morphological data incongruent? , pp. 295-333
    • Swofford, D.L.1
  • 32
    • 43549100460 scopus 로고    scopus 로고
    • Phylogeny and palaeoecology of the Adelophthalmoidea (Arthropoda; Chelicerata; Eurypterida)
    • Tetlie, O.E., Poschmann, M., 2008. Phylogeny and palaeoecology of the Adelophthalmoidea (Arthropoda; Chelicerata; Eurypterida). J. Syst. Paleontol. 6, 237-249.
    • (2008) J. Syst. Paleontol. , vol.6 , pp. 237-249
    • Tetlie, O.E.1    Poschmann, M.2
  • 33
    • 1942504273 scopus 로고    scopus 로고
    • Phylogeny of Early Cretaceous spatangoids (Echinodermata: Echinoidea) and taxonomic implications
    • Villier, L., Neraudeau, D., Clavel, B., Neumann, C., David, B., 2004. Phylogeny of Early Cretaceous spatangoids (Echinodermata: Echinoidea) and taxonomic implications. Palaeontology 47, 265-292.
    • (2004) Palaeontology , vol.47 , pp. 265-292
    • Villier, L.1    Neraudeau, D.2    Clavel, B.3    Neumann, C.4    David, B.5
  • 34
    • 0034350317 scopus 로고    scopus 로고
    • Age rank/clade rank metrics-sampling, taxonomy, and the meaning of "stratigraphic consistency"
    • Wagner, P.J., Sidor, C.A., 2000. Age rank/clade rank metrics-sampling, taxonomy, and the meaning of "stratigraphic consistency". Syst. Biol. 49, 463-479.
    • (2000) Syst. Biol. , vol.49 , pp. 463-479
    • Wagner, P.J.1    Sidor, C.A.2
  • 35
    • 0032381344 scopus 로고    scopus 로고
    • Fossil datum and paleobiological event terms, paleontostratigraphy, chronostratigraphy, and the definition of land mammal "age" boundaries
    • Walsh, S.L., 1998. Fossil datum and paleobiological event terms, paleontostratigraphy, chronostratigraphy, and the definition of land mammal "age" boundaries. J. Vertebr. Paleontol. 18, 150-179.
    • (1998) J. Vertebr. Paleontol. , vol.18 , pp. 150-179
    • Walsh, S.L.1
  • 36
    • 0033457184 scopus 로고    scopus 로고
    • Congruence between stratigraphy and phylogeny: randomization tests and the gap excess ratio
    • Wills, M.A., 1999. Congruence between stratigraphy and phylogeny: randomization tests and the gap excess ratio. Syst. Biol. 48, 559-580.
    • (1999) Syst. Biol. , vol.48 , pp. 559-580
    • Wills, M.A.1
  • 37
    • 0034784223 scopus 로고    scopus 로고
    • How good is the fossil record of arthropods? An assessment using the stratigraphic congruence of cladograms
    • Wills, M.A., 2001. How good is the fossil record of arthropods? An assessment using the stratigraphic congruence of cladograms Geol. J. 36, 187-210.
    • (2001) Geol. J. , vol.36 , pp. 187-210
    • Wills, M.A.1
  • 38
    • 58149267587 scopus 로고    scopus 로고
    • The modified gap excess ratio (GER*) and the stratigraphic congruence of dinosaur phylogenies
    • Wills, M.A., Barrett, P.M., Heathcote, J.F., 2008. The modified gap excess ratio (GER*) and the stratigraphic congruence of dinosaur phylogenies. Syst. Biol. 57, 891-904.
    • (2008) Syst. Biol. , vol.57 , pp. 891-904
    • Wills, M.A.1    Barrett, P.M.2    Heathcote, J.F.3
  • 39
    • 0036791125 scopus 로고    scopus 로고
    • Sauropod dinosaur phylogeny: critique and cladistic analysis
    • Wilson, J.A., 2002. Sauropod dinosaur phylogeny: critique and cladistic analysis. Zool. J. Linn. Soc. 136, 217-276.
    • (2002) Zool. J. Linn. Soc. , vol.136 , pp. 217-276
    • Wilson, J.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.