메뉴 건너뛰기




Volumn 107, Issue 50, 2010, Pages 21441-21446

Free energy profiles from single-molecule pulling experiments

Author keywords

Atomic force microscope; Force spectroscopy; Free energy calculation; Nonequilibrium work relations; Steered molecular dynamics

Indexed keywords

ACCURACY; ARTICLE; ENERGY; HISTOGRAM; IMAGE RECONSTRUCTION; KINETICS; MOLECULAR DYNAMICS; OPTICAL TWEEZERS; PRIORITY JOURNAL; PROTEIN FOLDING; SURFACE PROPERTY; THERMODYNAMICS;

EID: 78650753691     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1015661107     Document Type: Article
Times cited : (143)

References (26)
  • 1
    • 4243754128 scopus 로고    scopus 로고
    • Nonequilibrium equality for free energy differences
    • Jarzynski C (1997) Nonequilibrium equality for free energy differences. Phys Rev Lett 78:2690-2693.
    • (1997) Phys Rev Lett , vol.78 , pp. 2690-2693
    • Jarzynski, C.1
  • 2
    • 0000186593 scopus 로고    scopus 로고
    • Path-ensemble averages in systems driven far from equilibrium
    • Crooks GE (2000) Path-ensemble averages in systems driven far from equilibrium. Phys Rev E 61:2361-2366.
    • (2000) Phys Rev e , vol.61 , pp. 2361-2366
    • Crooks, G.E.1
  • 3
    • 0035957434 scopus 로고    scopus 로고
    • Free energy reconstruction from nonequilibrium singlemolecule pulling experiments
    • Hummer G, Szabo A (2001) Free energy reconstruction from nonequilibrium singlemolecule pulling experiments. Proc Natl Acad Sci USA 98:3658-3661.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 3658-3661
    • Hummer, G.1    Szabo, A.2
  • 4
    • 0037036070 scopus 로고    scopus 로고
    • Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality
    • Liphardt J, Dumont S, Smith SB, Tinoco I, Bustamante C (2002) Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality. Science 296:1832-1835.
    • (2002) Science , vol.296 , pp. 1832-1835
    • Liphardt, J.1    Dumont, S.2    Smith, S.B.3    Tinoco, I.4    Bustamante, C.5
  • 5
    • 24644450199 scopus 로고    scopus 로고
    • Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies
    • Collin D, et al. (2005) Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies. Nature 437:231-234.
    • (2005) Nature , vol.437 , pp. 231-234
    • Collin, D.1
  • 6
    • 23744478437 scopus 로고    scopus 로고
    • Free energy surfaces from single-molecule force spectroscopy
    • Hummer G, Szabo A (2005) Free energy surfaces from single-molecule force spectroscopy. Acc Chem Res 38:504-513.
    • (2005) Acc Chem Res , vol.38 , pp. 504-513
    • Hummer, G.1    Szabo, A.2
  • 7
    • 38049169169 scopus 로고    scopus 로고
    • Axis-dependent anisotropy in protein unfolding from integrated nonequilibrium single-molecule experiments, analysis, and simulation
    • Nome RA, Zhao JM, Hoff WD, Scherer NF (2007) Axis-dependent anisotropy in protein unfolding from integrated nonequilibrium single-molecule experiments, analysis, and simulation. Proc Natl Acad Sci USA 104:20799-20804.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 20799-20804
    • Nome, R.A.1    Zhao, J.M.2    Hoff, W.D.3    Scherer, N.F.4
  • 8
    • 33750970551 scopus 로고    scopus 로고
    • Direct measurement of the full sequence-dependent folding landscape of a nucleic acid
    • Woodside MT, et al. (2006) Direct measurement of the full sequence-dependent folding landscape of a nucleic acid. Science 314:1001-1004.
    • (2006) Science , vol.314 , pp. 1001-1004
    • Woodside, M.T.1
  • 10
    • 33646987405 scopus 로고
    • Optimized Monte Carlo data analysis
    • Ferrenberg AM, Swendsen RH (1989) Optimized Monte Carlo data analysis. Phys Rev Lett 63:1195-1198.
    • (1989) Phys Rev Lett , vol.63 , pp. 1195-1198
    • Ferrenberg, A.M.1    Swendsen, R.H.2
  • 11
    • 43249106438 scopus 로고    scopus 로고
    • Optimized free energies from bidirectional single-molecule force spectroscopy
    • Minh DDL, Adib AB (2008) Optimized free energies from bidirectional single-molecule force spectroscopy. Phys Rev Lett 100:180602.
    • (2008) Phys Rev Lett , vol.100 , pp. 180602
    • Minh, D.D.L.1    Adib, A.B.2
  • 12
    • 0042885340 scopus 로고    scopus 로고
    • Free energy calculation from steered molecular dynamics simulations using Jarzynski's equality
    • Park S, Khalili-Araghi F, Tajkhorshid E, Schulten K (2003) Free energy calculation from steered molecular dynamics simulations using Jarzynski's equality. J Chem Phys 119:3559-3566.
    • (2003) J Chem Phys , vol.119 , pp. 3559-3566
    • Park, S.1    Khalili-Araghi, F.2    Tajkhorshid, E.3    Schulten, K.4
  • 16
    • 76649093956 scopus 로고    scopus 로고
    • Full distance-resolved folding energy landscape of one single protein molecule
    • Gebhardt JCM, Bornschlögl T, Rief M (2010) Full distance-resolved folding energy landscape of one single protein molecule. Proc Natl Acad Sci USA 107:2013-2018.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 2013-2018
    • Gebhardt, J.C.M.1    Bornschlögl, T.2    Rief, M.3
  • 17
  • 18
    • 57349124448 scopus 로고    scopus 로고
    • Theory analysis and interpretation of singlemolecule force spectroscopy experiments
    • Dudko OK, Hummer G, Szabo A (2008) Theory analysis and interpretation of singlemolecule force spectroscopy experiments. Proc Natl Acad Sci USA 105:15755-15760.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 15755-15760
    • Dudko, O.K.1    Hummer, G.2    Szabo, A.3
  • 19
    • 41149129250 scopus 로고    scopus 로고
    • Protein folding kinetics under force from molecular simulation
    • Best RB, Hummer G (2008) Protein folding kinetics under force from molecular simulation. J Am Chem Soc 130:3706-3707.
    • (2008) J Am Chem Soc , vol.130 , pp. 3706-3707
    • Best, R.B.1    Hummer, G.2
  • 20
    • 33645721778 scopus 로고
    • Activated rate-processes in the multidimensional case. Consideration of recrossings in the multidimensional Kramers problem with anisotropic friction
    • Berezhkovskii AM, Zitserman VY (1991) Activated rate-processes in the multidimensional case. Consideration of recrossings in the multidimensional Kramers problem with anisotropic friction. Chem Phys 157:141-155.
    • (1991) Chem Phys , vol.157 , pp. 141-155
    • Berezhkovskii, A.M.1    Zitserman, V.Y.2
  • 21
    • 33645004171 scopus 로고    scopus 로고
    • Intrinsic rates and activation free energies from single-molecule pulling experiments
    • Dudko OK, Hummer G, Szabo A (2006) Intrinsic rates and activation free energies from single-molecule pulling experiments. Phys Rev Lett 96:108101.
    • (2006) Phys Rev Lett , vol.96 , pp. 108101
    • Dudko, O.K.1    Hummer, G.2    Szabo, A.3
  • 22
    • 84955266913 scopus 로고    scopus 로고
    • Single-molecule rupture dynamics on multidimensional landscapes
    • Suzuki Y, Dudko OK (2010) Single-molecule rupture dynamics on multidimensional landscapes. Phys Rev Lett 104:048101.
    • (2010) Phys Rev Lett , vol.104 , pp. 048101
    • Suzuki, Y.1    Dudko, O.K.2
  • 23
    • 17844397196 scopus 로고    scopus 로고
    • Thermodynamic and kinetic aspects of RNA pulling experiments
    • Manosas M, Ritort F (2005) Thermodynamic and kinetic aspects of RNA pulling experiments. Biophys J 88:3224-3242.
    • (2005) Biophys J , vol.88 , pp. 3224-3242
    • Manosas, M.1    Ritort, F.2
  • 24
    • 0001050714 scopus 로고
    • An iterative technique for the rectification of observed distributions
    • Lucy LB (1974) An iterative technique for the rectification of observed distributions. Astron J 79:745-754.
    • (1974) Astron J , vol.79 , pp. 745-754
    • Lucy, L.B.1
  • 25
    • 0002594849 scopus 로고
    • Bayesian-based iterative method of image restoration
    • Richardson WH (1972) Bayesian-based iterative method of image restoration. J Opt Soc Am A 62:55-59.
    • (1972) J Opt Soc Am A , vol.62 , pp. 55-59
    • Richardson, W.H.1
  • 26
    • 0242677537 scopus 로고    scopus 로고
    • Equilibrium free energies from nonequilibrium measurements using maximum-likelihood methods
    • Shirts MR, Bair E, Hooker G, Pande VS (2003) Equilibrium free energies from nonequilibrium measurements using maximum-likelihood methods. Phys Rev Lett 91:140601.
    • (2003) Phys Rev Lett , vol.91 , pp. 140601
    • Shirts, M.R.1    Bair, E.2    Hooker, G.3    Pande, V.S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.