메뉴 건너뛰기




Volumn 25, Issue 3, 1998, Pages 446-462

Quantitation of mixed-base populations of HIV-1 variants by automated DNA sequencing with BODIPY® dye-labeled primers

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS DNA;

EID: 0031670813     PISSN: 07366205     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (9)

References (34)
  • 2
    • 0029972674 scopus 로고    scopus 로고
    • Heterozygote and mutation detection by direct automated fluorescent DNA sequencing using a mutant Taq DNA polymerase
    • Chadwick, R.B., M.P. Conrad, M.D. McGinnis, L. Johnston-Dow, S.L. Spurgeon and M.N. Kronick. 1996, Heterozygote and mutation detection by direct automated fluorescent DNA sequencing using a mutant Taq DNA polymerase. BioTechniques 20:676-683.
    • (1996) BioTechniques , vol.20 , pp. 676-683
    • Chadwick, R.B.1    Conrad, M.P.2    McGinnis, M.D.3    Johnston-Dow, L.4    Spurgeon, S.L.5    Kronick, M.N.6
  • 3
    • 0022550776 scopus 로고
    • Genetic variation in AIDS viruses
    • Coffin, J.M. 1986. Genetic variation in AIDS viruses. Cell 46:1-4.
    • (1986) Cell , vol.46 , pp. 1-4
    • Coffin, J.M.1
  • 5
    • 0028952146 scopus 로고
    • HIV population dynamics in vivo: Implications for genetic variation, pathogenesis, and therapy
    • Coffin, J.M. 1995. HIV population dynamics in vivo: implications for genetic variation, pathogenesis, and therapy. Science 267:483-489.
    • (1995) Science , vol.267 , pp. 483-489
    • Coffin, J.M.1
  • 7
    • 0025282802 scopus 로고
    • Multiplex DNA deletion detection and exon sequencing of the hypoxanthine phosphoribosyltransferase gene in Lesch-Nyhan families
    • Gibbs, R.A., P.N. Nguyen, A. Edwards, A.B. Civitello and C.T. Caskey. 1990. Multiplex DNA deletion detection and exon sequencing of the hypoxanthine phosphoribosyltransferase gene in Lesch-Nyhan families. Genomics 7:235-244.
    • (1990) Genomics , vol.7 , pp. 235-244
    • Gibbs, R.A.1    Nguyen, P.N.2    Edwards, A.3    Civitello, A.B.4    Caskey, C.T.5
  • 9
    • 0031984706 scopus 로고    scopus 로고
    • Comparison of fluorescence energy transfer primers with different donor-acceptor dye combinations
    • Hung, S.C., R.A. Mathies and A.N. Glazer. 1998. Comparison of fluorescence energy transfer primers with different donor-acceptor dye combinations. Anal. Biochem. 255:32-38.
    • (1998) Anal. Biochem. , vol.255 , pp. 32-38
    • Hung, S.C.1    Mathies, R.A.2    Glazer, A.N.3
  • 10
    • 0001040973 scopus 로고
    • DNA sequencing with Thermus aqitaticus DNA polymerase and direct sequencing of polymerase chain reaction-amplified
    • Innis, M.A., K.B. Myambo, D.H. Gelfand and M.A.D. Brow. 1988. DNA sequencing with Thermus aqitaticus DNA polymerase and direct sequencing of polymerase chain reaction-amplified, Proc. Natl. Acad. Sci. USA 85:9436-9440.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 9436-9440
    • Innis, M.A.1    Myambo, K.B.2    Gelfand, D.H.3    Brow, M.A.D.4
  • 11
    • 0029055843 scopus 로고
    • Fluorescence energy transfer dye-labeled primers for DNA sequencing and analysis
    • Ju, J., C. Ruan, C.W. Fuller, A.N. Glazer and R.A. Mathies. 1995. Fluorescence energy transfer dye-labeled primers for DNA sequencing and analysis. Proc. Natl. Acad. Sci. USA 92:4347-4351.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 4347-4351
    • Ju, J.1    Ruan, C.2    Fuller, C.W.3    Glazer, A.N.4    Mathies, R.A.5
  • 12
    • 0027916595 scopus 로고
    • Quantitative detection of HIV-1 drug resistance mutations by automated DNA sequencing
    • Larder, B.A., A. Kohli, P. Kellam, S.D. Kemp, M. Kronick and R.D. Henfrey. 1993. Quantitative detection of HIV-1 drug resistance mutations by automated DNA sequencing. Nature 365:671-673.
    • (1993) Nature , vol.365 , pp. 671-673
    • Larder, B.A.1    Kohli, A.2    Kellam, P.3    Kemp, S.D.4    Kronick, M.5    Henfrey, R.D.6
  • 14
    • 0027463033 scopus 로고
    • Screening for point mutations by semi-automated DNA sequencing using Sequenase and magnetic beads
    • Leren, T.P., O.K. Rødningen, O. Røsby, K. Solberg and K. Berg. 1993. Screening for point mutations by semi-automated DNA sequencing using Sequenase and magnetic beads. BioTechniques 14:618-623.
    • (1993) BioTechniques , vol.14 , pp. 618-623
    • Leren, T.P.1    Rødningen, O.K.2    Røsby, O.3    Solberg, K.4    Berg, K.5
  • 15
    • 0024469737 scopus 로고
    • Automated methods for single-stranded DNA isolation and the dideoxynucleotide DNA sequencing reactions on a robotic workstation
    • Mardis, E.R. and B.A. Roe. 1989. Automated methods for single-stranded DNA isolation and the dideoxynucleotide DNA sequencing reactions on a robotic workstation. BioTechniques 7:840-850.
    • (1989) BioTechniques , vol.7 , pp. 840-850
    • Mardis, E.R.1    Roe, B.A.2
  • 16
    • 0029056851 scopus 로고
    • Accurate determination of DNA in agarose gels using the novel algorithm GelScann(1.0)
    • Metzker, M.L., K.M. Allain, and R.A. Gibbs. 1995. Accurate determination of DNA in agarose gels using the novel algorithm GelScann(1.0).Comput. Appl. Biosci. 11:187-195.
    • (1995) Comput. Appl. Biosci. , vol.11 , pp. 187-195
    • Metzker, M.L.1    Allain, K.M.2    Gibbs, R.A.3
  • 17
    • 0029969377 scopus 로고    scopus 로고
    • Electrophoretically uniform fluorescent dyes for automated DNA sequencing
    • Metzker, M.L., J. Lu and R.A. Gibbs. 1996. Electrophoretically uniform fluorescent dyes for automated DNA sequencing. Science 271:1420-1422.
    • (1996) Science , vol.271 , pp. 1420-1422
    • Metzker, M.L.1    Lu, J.2    Gibbs, R.A.3
  • 20
    • 0026254543 scopus 로고
    • Rapid and efficient cloning of alu-PCR products using uracil DNA glycosylation
    • Nisson, P.E., A. Rashtchian and P.C. Watkins. 1991. Rapid and efficient cloning of alu-PCR products using uracil DNA glycosylation. PCR Methods Appl. 1:120-123.
    • (1991) PCR Methods Appl , vol.1 , pp. 120-123
    • Nisson, P.E.1    Rashtchian, A.2    Watkins, P.C.3
  • 23
    • 0029967721 scopus 로고    scopus 로고
    • HIV-1 dynamics in vivo: Virion clearance rate, infected cell life-span, and viral generation time
    • Perelson, A.S., A.U. Neumann, M. Markowitz, J.M. Leonard and D.D. Ho. 1996. HIV-1 dynamics in vivo: virion clearance rate, infected cell life-span, and viral generation time. Science 271:1582-1586.
    • (1996) Science , vol.271 , pp. 1582-1586
    • Perelson, A.S.1    Neumann, A.U.2    Markowitz, M.3    Leonard, J.M.4    Ho, D.D.5
  • 24
    • 0028858502 scopus 로고
    • Efficient, automatic detection of heterozygous bases during large-scale DNA sequence screening
    • Phelps, R.S., R.B. Chadwick, M.P. Conrad, M.N. Kronick and A. Kamb. 1995. Efficient, automatic detection of heterozygous bases during large-scale DNA sequence screening. BioTechniques 19:984-989.
    • (1995) BioTechniques , vol.19 , pp. 984-989
    • Phelps, R.S.1    Chadwick, R.B.2    Conrad, M.P.3    Kronick, M.N.4    Kamb, A.5
  • 25
    • 0024267430 scopus 로고
    • Fidelity of HIV-1 reverse transcriptase
    • Preston, B.D., B.J. Poiesz and L.A. Loeb. 1988. Fidelity of HIV-1 reverse transcriptase. Science 242:1168-1171.
    • (1988) Science , vol.242 , pp. 1168-1171
    • Preston, B.D.1    Poiesz, B.J.2    Loeb, L.A.3
  • 26
    • 0024273119 scopus 로고
    • The accuracy of reverse transcriptase from HIV-1
    • Roberts, J.D., K. Bebenek and T.A. Kunkel. 1988. The accuracy of reverse transcriptase from HIV-1. Science 242:1171-1173.
    • (1988) Science , vol.242 , pp. 1171-1173
    • Roberts, J.D.1    Bebenek, K.2    Kunkel, T.A.3
  • 29
    • 0023371227 scopus 로고
    • DNA sequence analysis with a modified bacteriophage T7 DNA polymerase
    • Tabor, S. and C.C. Richardson. 1987. DNA sequence analysis with a modified bacteriophage T7 DNA polymerase. Proc. Natl. Acad. Sci. USA 84:4767-4771.
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 4767-4771
    • Tabor, S.1    Richardson, C.C.2
  • 30
    • 0006962619 scopus 로고
    • Effect of manganese ions on the incorporation of dideoxynucleotides by bacteriophage T7 DNA polymerase and Escherichia coli DNA polymerase I
    • Tabor, S. and C.C. Richardson. 1989. Effect of manganese ions on the incorporation of dideoxynucleotides by bacteriophage T7 DNA polymerase and Escherichia coli DNA polymerase I. Proc. Natl. Acad. Sci. USA 86:4076-4080.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 4076-4080
    • Tabor, S.1    Richardson, C.C.2
  • 31
    • 0029023051 scopus 로고
    • A single residue in DNA polymerases of the Escherichia coli DNA polymerase I family is critical for distinguishing between deoxy- And dideoxyribonucleotides
    • Tabor, S. and C.C. Richardson. 1995. A single residue in DNA polymerases of the Escherichia coli DNA polymerase I family is critical for distinguishing between deoxy- and dideoxyribonucleotides. Proc. Natl. Acad. Sci. USA 92:6339-6343.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 6339-6343
    • Tabor, S.1    Richardson, C.C.2
  • 32
    • 0031115901 scopus 로고    scopus 로고
    • Thermo Sequenase™ DNA polymerase and T. acidophilum pyrophosphatase: New thermostable enzymes for DNA sequencing
    • Vander Horn, P.B., M.C. Davis, J.J. Cunniff, C. Ruan, B.F. McArdle, S.B. Samols, J. Szasz, G. Hu et al. 1997. Thermo Sequenase™ DNA polymerase and T. acidophilum pyrophosphatase: new thermostable enzymes for DNA sequencing. BioTechniques 22:758-765.
    • (1997) BioTechniques , vol.22 , pp. 758-765
    • Vander Horn, P.B.1    Davis, M.C.2    Cunniff, J.J.3    Ruan, C.4    McArdle, B.F.5    Samols, S.B.6    Szasz, J.7    Hu, G.8
  • 34


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.