New microsatellite markers for examining genetic variation in peripheral and core populations of the Coastal Giant Salamander (Dicamptodon tenebrosus)

PLoS ONE

Volumn 5, Issue 12, 2010, Pages

  Dudaniec, Rachael Y ^a   Storfer, Andrew ^b   Spear, Stephen F ^b   Richardson, John S ^a  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^b WASHINGTON STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALLELE; ANIMAL TISSUE; ARTICLE; CANADA; CONTROLLED STUDY; DICAMPTODON TENEBROSUS; ENDANGERED SPECIES; GENE LINKAGE DISEQUILIBRIUM; GENE LOCUS; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GENOTYPE; GEOGRAPHICAL VARIATION (SPECIES); HABITAT FRAGMENTATION; HETEROZYGOSITY; HOMOZYGOSITY; MICROSATELLITE MARKER; NONHUMAN; SALAMANDER; SPECIES RICHNESS; UNITED STATES; AMPHIBIA; ANIMAL; BIOLOGICAL MODEL; GENETICS; HETEROZYGOTE; HOMOZYGOTE; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; SPECIES DIFFERENCE;

CRYPTOBRANCHIDAE; DICAMPTODON TENEBROSUS;

MICROSATELLITE DNA;

ALLELES; ANIMALS; BASE SEQUENCE; GENETIC VARIATION; HETEROZYGOTE; HOMOZYGOTE; MICROSATELLITE REPEATS; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; POLYMORPHISM, GENETIC; SPECIES SPECIFICITY; URODELA; WASHINGTON;

EID: 78650723380     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0014333     Document Type: Article

References (18)

1. Bridle JR, Vines TH (2007) Limits to evolution at range margins: when and why does adaptation fail? Trends Ecol Evol 22: 140-147.
2. Curtis JMR, Taylor EB (2000) Isolation and characterization of microsatellite loci in the Pacific Giant Salamander Dicamptodon tenebrosus. Mol Ecol 9: 116-118.
3. Curtis JMR, Taylor EB (2003) The genetic structure of coastal giant salamanders (Dicamptodon tenebrosus) in a managed forest. Biol Conservat 115: 45-54.
4. Steele CA, Baumsteiger J, Storfer A (2008) Polymorphic tetranucleotide microsatellites for Cope's giant salamander (Dicamptodon copei) and Pacific giant salamander (Dicamptodon tenebrosus). Mol Ecol Res 8: 1071-1073.
5. Sambrook J, Fritsch EF, Maniatas T (1989) Molecular Cloning: A Laboratory Manual, 2nd edn. New York: Cold Spring Harbor Laboratory Press.
6. Hamilton MB, Pincus EL, Di Fiore A, Fleischer RC (1999) Universal linker and ligation procedures for construction of genomic DNA libraries enriched for microsatellites. Biotechniques 27: 500-507.
7. Gautschi B, Tenzer I, Müller JP, Schmid B (2000) Isolation and characterization of microsatellite loci in the bearded vulture (Gypaetus barbatus) and crossamplification in three Old World vulture species. Mol Ecol 9: 2193-2219.
8. Gautschi B, Widmer A, Koella J (2000) Isolation and characterization of microsatellite loci in the Dice Snake (Natrix tessellata). Mol Ecol 9: 2191-2193.
9. Wang J (2004) Sibship reconstruction from genetic data with typing errors. Genetics 166: 1963-1979.
10. Steele CA, Baumsteiger J, Storfer A (2009) Influence of life-history variation on the genetic structure of two sympatric salamander taxa. Mol Ecol 18: 1629-1639.
11. Van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) MICROCHECKER: Software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4: 535-538.
12. Raymond M, Rousset F (1995) GENEPOP (version 1.2): Population genetics software for exact tests and ecumenicism. J Heredity 86: 248-249.
13. Hochberg Y (1988) A sharper Bonferroni procedure for multiple tests of significance. Biometrika 75: 800-803.
14. Peakall R, Smouse PE (2005) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research Mol Ecol Notes 6: 288-295.
15. Kalinowski ST (2005) HP-Rare: a computer program for performing rarefaction on measures of allelic diversity. Mol Ecol Notes 5: 187-189.
16. Kalinowski ST (2004) Counting alleles with rarefaction: private alleles and hierarchical sampling designs. Conservat Genetics 5: 539-543.
17. Dieringer D, Schlötterer C (2003) Microsatellite analyser (MSA): a platform independent analysis tool for large microsatellite data sets. Mol Ecol Notes 3: 167-169.
18. Eckert CG, Samis KE, Lougheed SC (2008) Genetic variation across species' geographical ranges: the central-marginal hypothesis and beyond. Mol Ecol 17: 1170-1188.