A novel host-specific restriction system associated with DNA backbone S-modification in Salmonella

Nucleic Acids Research

Volumn 38, Issue 20, 2010, Pages 7133-7141

  Xu, Tiegang ^a   Yao, Fen ^a   Zhou, Xiufen ^a   Deng, Zixin ^a   You, Delin ^a  

^a SHANGHAI JIAO TONG UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; PHOSPHOROTHIOIC ACID;

ARTICLE; CONTROLLED STUDY; DNA ISOLATION; DNA MODIFICATION; DNA RESTRICTION; ESCHERICHIA COLI; GENE CLUSTER; GENE INACTIVATION; GENETIC MANIPULATION; HOST RANGE; MOLECULAR CLONING; MUTATIONAL ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SALMONELLA ENTERICA;

BACTERIA; BASE SEQUENCE; DNA, BACTERIAL; ESCHERICHIA COLI; GENES, BACTERIAL; MOLECULAR SEQUENCE DATA; SALMONELLA ENTERICA; SPECIES SPECIFICITY; SULFUR;

ESCHERICHIA COLI; SALMONELLA; SALMONELLA ENTERICA;

EID: 78650700875     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkq610     Document Type: Article

References (25)

1. Zhou, X., Deng, Z., Firmin, J. L., Hopwood, D. A. and Kieser, T. (1988) Site-specific degradation of Streptomyces lividans DNA during electrophoresis in buffers contaminated with ferrous iron. Nucleic Acids Res., 16, 4341-4352.
2. Liang, J., Wang, Z., He, X., Li, J., Zhou, X. and Deng, Z. (2007) DNA modification by sulfur: analysis of the sequence recognition specificity surrounding the modification sites. Nucleic Acids Res., 35, 2944-2954.
3. Wang, L., Chen, S., Xu, T., Taghizadeh, K., Wishnok, J. S., Zhou, X., You, D., Deng, Z. and Dedon, P. C. (2007) Phosphorothioation of DNA in bacteria by dnd genes. Nat. Chem. Biol., 3, 709-710.
4. Zhou, X., He, X., Liang, J., Li, A., Xu, T., Kieser, T., Helmann, J. D. and Deng, Z. (2005) A novel DNA modification by sulphur. Mol. Microbiol., 57, 1428-1438.
5. You, D., Wang, L., Yao, F., Zhou, X. and Deng, Z. (2007) A novel DNA modification by sulfur: DndA is a NifS-like cysteine desulfurase capable of assembling DndC as an iron-sulfur cluster protein in Streptomyces lividans. Biochemistry, 46, 6126-6133.
6. Yao, F., Xu, T., Zhou, X., Deng, Z. and You, D. (2009) Functional analysis of spfD gene involved in DNA phosphorothioation in Pseudomonas fluorescens Pf0-1. FEBS Lett., 583, 729-733.
7. Wion, D. and Casadesus, J. (2006) N6-methyl-adenine: an epigenetic signal for DNA-protein interactions. Nat. Rev. Microbiol., 4, 183-192.
8. Zhang, X., Yazaki, J., Sundaresan, A., Cokus, S., Chan, S. W., Chen, H., Henderson, I. R., Shinn, P., Pellegrini, M., Jacobsen, S. E. et al. (2006) Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell, 126, 1189-1201.
9. Messer, W. and Noyer-Weidner, M. (1988) Timing and targeting: the biological functions of Dam methylation in E. coli. Cell, 54, 735-737.
10. Gommers-Ampt, J. H., Van Leeuwen, F., de Beer, A. L., Vliegenthart, J. F., Dizdaroglu, M., Kowalak, J. A., Crain, P. F. and Borst, P. (1993) beta-D-glucosyl-hydroxymethyluracil: a novel modified base present in the DNA of the parasitic protozoan T. brucei. Cell, 75, 1129-1136.
11. Siegfried, Z. and Cedar, H. (1997) DNA methylation: a molecular lock. Curr. Biol., 7, R305-307.
12. Song, H. K., Sohn, S. H. and Suh, S. W. (1999) Crystal structure of deoxycytidylate hydroxymethylase from bacteriophage T4, a component of the deoxyribonucleoside triphosphate-synthesizing complex. EMBO J., 18, 1104-1113.
13. Liesegang, A. and Tschape, H. (2002) Modified pulsed-field gel electrophoresis method for DNA degradation-sensitive Salmonella enterica and Escherichia coli strains. Int. J. Med. Microbiol., 291, 645-648.
14. Murase, T., Nagato, M., Shirota, K., Katoh, H. and Otsuki, K. (2004) Pulsed-field gel electrophoresis-based subtyping of DNA degradation-sensitive Salmonella enterica subsp. enterica serovar Livingstone and serovar Cerro isolates obtained from a chicken layer farm. Vet. Microbiol., 99, 139-143.
15. He, X., Ou, H. Y., Yu, Q., Zhou, X., Wu, J., Liang, J., Zhang, W., Rajakumar, K. and Deng, Z. (2007) Analysis of a genomic island housing genes for DNA S-modification system in Streptomyces lividans 66 and its counterparts in other distantly related bacteria. Mol. Microbiol., 65, 1034-1048.
16. Wilson, G. G. and Murray, N. E. (1991) Restriction and modification systems. Annu. Rev. Genet., 25, 585-627.
17. Hanahan, D. (1983) Studies on transformation of Escherichia coli with plasmids. J. Mol. Biol., 166, 557-580.
18. Alting-Mees, M. A. and Short, J. M. (1989) pBluescript II: gene mapping vectors. Nucleic Acids Res., 17, 9494.
19. Yanisch-Perron, C., Vieira, J. and Messing, J. (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene, 33, 103-119.
20. Datsenko, K. A. and Wanner, B. L. (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl Acad. Sci. USA, 97, 6640-6645.
21. Lalioti, M. and Heath, J. (2001) A new method for generating point mutations in bacterial artificial chromosomes by homologous recombination in Escherichia coli. Nucleic Acids Res., 29, E14.
22. Bickle, T. A. and Kruger, D. H. (1993) Biology of DNA restriction. Microbiol. Rev., 57, 434-450.
23. Tock, M. R. and Dryden, D. T. (2005) The biology of restriction and anti-restriction. Curr. Opin. Microbiol., 8, 466-472.
24. Kobayashi, I., Nobusato, A., Kobayashi-Takahashi, N. and Uchiyama, I. (1999) Shaping the genome-restriction-modification systems as mobile genetic elements. Curr. Opin. Genet. Dev., 9, 649-656.
25. Marinus, M. G. and Casadesus, J. (2009) Roles of DNA adenine methylation in host-pathogen interactions: mismatch repair, transcriptional regulation, and more. FEMS Microbiol. Rev., 33, 488-503.