Recombination Within and Between Species of the Alpha Proteobacterium Bartonella Infecting Rodents

Microbial Ecology

Volumn 61, Issue 1, 2011, Pages 134-145

  Paziewska, Anna ^a   Harris, Philip D ^b   Zwolińska, Lucyna ^a   Bajer, Anna ^a   Siński, Edward ^a  

^a UNIVERSITY OF WARSAW   (Poland)

^b UNIVERSITY OF OSLO   (Norway)

Author keywords

[No Author keywords available]

Indexed keywords

ALPHAPROTEOBACTERIA; APODEMUS FLAVICOLLIS; BARTONELLA; BARTONELLA BIRTLESII; BARTONELLA DOSHIAE; BARTONELLA GRAHAMII; BARTONELLA TAYLORII; MICROTUS; MICROTUS ARVALIS; MURIDAE; MUS; PROTEOBACTERIA; RODENTIA;

EID: 78650679215     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-010-9735-1     Document Type: Article

References (45)

1. Baldo L, Bordenstein S, Wernegreen JJ, Werren JH (2005) Widespread recombination throughout Wolbachia genomes. Mol Biol Evol 23: 437-449.
2. Berglund EC, Frank AC, Calteau A, Petterson OV, Granberg F, Eriksson AS, Naslund K, Holmberg M, Lindroos H, Andersson SGE (2009) Run off replication of host adaptability genes is associated with gene transfer agents in the genome of mouse infecting Bartonella grahamii. PLoS Genet 5: e1000546.
3. Berglund EC, Ehrenborg C, Pettersson OV, Granberg F, Näslund K, Holmberg M, Andersson SGE (2010) Genome dynamics of Bartonella grahamii in micro-populations of woodland rodents. BMC Genomics 11: 152.
4. Birtles RJ, Harrison TG, Molyneux DH (1994) Grahamella in small woodland mammals in the UK-isolation, prevalence and host specificity. Ann Trop Med Parasitol 88: 317-327.
5. Birtles RJ (2005) Bartonellae as elegant haemotropic parasites. Ann NY Acad Sci 1063: 270-279.
6. Boulouis HJ, Chang CC, Henn JB, Hasten RW, Chomel BB (2005) Factors associated with the rapid emergence of zoonotic Bartonella infections. Vet Res 36: 383-410.
7. Breitschwerdt EB, Maggi RG, Chomel BB, Lappin MR (2009) Bartonellosis: an emerging infectious disease of zoonotic importance to animals and human beings. Vet Emerg Crit Care (San Antonio) 20: 8-30.
8. Breitschwerdt EB, Maggi RG, Cadenas MB, de Paiva V, Diniz PP (2009) A groundhog, a novel Bartonella sequence and my father's death. Emerg Infect Dis 15: 2080-2086.
9. Crandall KA, Templeton AR (1993) Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction. Genetics 134: 959-969.
10. Clement M, Posada D, Crandall KA (2000) TCS: a computer program to estimate gene geneologies. Mol Ecol 9: 1657-1659.
11. Concannon R, Wynn-Owen K, Simpson VR, Birtles RJ (2005) Molecular characterisation of haemoparasites infecting bats (Microchiroptera) from bats. Parasitology 131: 489-496.
12. Ehrenborg C, Handley S, Ellis B, Mills J, Holmberg M (2003) Bartonella grahamii infecting rodents display high genetic diversity over short geographic distances. Ann NY Acad Sci 990: 233-235.
13. Feil EJ, Li BC, Aanensen DM, Hanage WP, Spratt BG (2004) eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J Bacteriol 186: 1518-1530.
14. Feil E, Zhou J, Maynard Smith J, Spratt BG (1996) A comparison of the nucleotide sequences of the adk and recA genes of pathogenic and commensal Neisseria species: evidence for extensive inter-species recombination within adk. J Mol Evol 43: 631-640.
15. Fenollar F, Sire S, Raoult D (2005) Bartonella vinsonii subsp. arupensis as an agent of blood culture-negative endocarditis in a human. J Clin Microbiol 43: 945-947.
16. Harms CA, Maggi RG, Breitschwerdt EB, Clemons-Chevis CL, Solangi M, Rotstein DS, Fair PA, Hansen LJ, Hohn AA, Lovewell GN, McLellan WA, Pabst DA, Rowles TK, Schwacke LH, Townsend FI, Wells RS (2008) Bartonella species detection in captive, stranded and free ranging cetaceans. Vet Res 39: 59.
17. Harris PD, Paziewska A, Zwolińska L, Siński E (2009) Seasonality of the ectoparasite community of woodland rodents in a Mazurian forest, Poland. Wiad Parazytol 55: 377-388.
18. Heath L, van der Walt E, Varsani A, Martin DP (2006) Recombinant patterns in aphthoviruses mirror those found in other picornaviruses. J Virol 80: 11827-11832.
19. Henn JB, Chomel BB, Boulois HJ, Kasten RW, Murray WJ, Bar-Gal GK, King R, Courreau JF, Baneth G (2009) Bartonella rochalimae in raccoons, coyotes and red foxes. Emerg Infect Dis 15: 1984-1986.
20. Guindon S, Gascuel O (2003) A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704.
21. Inoue K, Kabeya H, Kosoy MH, Bai Y, Smirnov G, McColl D, Artsob H, Maruyama S (2009) Evolutionary and geographical relationships of Bartonella grahamii isolates from wild rodents by multi-locus sequencing analysis. Microb Ecol 57: 534-541.
22. Inoue K, Kabeya H, Shiratori H, Ueda K, Kosoy MY, Chomel BB, Boulouis HJ, Maruyama S (2009) Bartonella japonica sp. nov. and Bartonella silvatica sp. nov., isolated from Apodemus mice in Japan. Int J Syst Evol Microbiol. doi: 10. 1099/ijs. 0. 011528-0.
23. Inoue K, Maruyanra S, Kabeya H, Hagiya K, Izumi Y, Une Y, Yoshikawa Y (2009) Exotic small mammals as potential reservoirs of zoonotic Bartonella spp. Emerg Infect Dis 15: 526-532.
24. Kerkhoff FT, Bergmans AM, van Der Zee A, Rothova A (1999) Demonstration of Bartonella grahamii DNA in ocular fluids of a patient with neuroretinitis. J Clin Microbiol 37: 4034-4038.
25. Kosoy MY, Regnery RL, Tzianabos T, Marston EL, Jones DC, Green D, Maupin GO, Olson JG, Childs JE (1997) Distribution, diversity and host specificity of Bartonella in rodents from the Southeastern United States. Am J Trop Med Hyg 57: 578-588.
26. Kozakiewicz M, Gortat T, Kozakiewicz A, Barkowska M (1999) Effects of habitat fragmentation on four rodent species in a Polish farm landscape. Landscape Ecol 14: 391-400.
27. Kozakiewicz M, Kozakiewicz A (2008) Long-term dynamics and biodiversity changes in the mosaic of agricultural and forest habitats. Ann Zool Fenn 45: 263-269.
28. La Scola B, Zeaiter Z, Khamis A, Raoult D (2003) Gene-sequence-based criteria for species definition in bacteriology: the Bartonella paradigm. Trends Microbiol 11: 318-321.
29. Maiden MCJ, Bygraves JA, Feil E (1998) Multilocus sequence typing: a portable approach to the identification of clades within populations of pathogenic microorganisms. Proc Natl Acad Sci USA 95: 3140-3145.
30. Morick D, Osinga N, Gruys E, Harrus S (2009) Identification of a Bartonella species in the harbour seal (Phoca vitulina) and in seal lice (Echinophthirius horridus). Vector Borne Zoonotic Dis 9: 751-753.
31. Nielsen R, Beaumont MA (2009) Statistical inferences in phylogeography. Mol Ecol 18: 1034-1037.
32. Nguyen NT, Maurus R, Stokell DJ, Ayed A, Duckworth HW, Brayer GD (2001) Comparative analysis of folding and substrate binding sites between regulated hexameric type II citrate synthases and unregulated dimeric type I enzymes. Biochemistry 40: 13177-13187.
33. Norman AF, Regnery R, Jameson P, Greene C, Krause DC (1995) Differentiation of Bartonella-like isolates at the species level by PCR-restriction fragment length polymorphism in the citrate synthase gene. J Clin Microbiol 33: 1797-1803.
34. Panzacchi M, Linnell JDC, Melis C, Odden M, Odden J, Gorini L, Andersen R (2010) Effect of land use on small mammal abundance and diversity in a forest-farmland mosaic in south-eastern Norway. For Ecol Manage 259: 1536-1545.
35. Paziewska A, Zwolińska L, Harris PD, Bajer A, Siński E (2010) Utilisation of rodent species by larvae and nymphs of hard ticks (Ixodidae) in two habitats in North East Poland. Exp Appl Acarol 50: 79-91.
36. Posada D (2008) jModelTest: phylogenetic model averaging. Mol Biol Evol 25: 1253-1256.
37. Renesto P, Gouvernet J, Drancourt M, Roux V, Raoult D (2001) Use of rpoB gene analysis for detection and identification of Bartonella species. J Clin Microbiol 39: 430-437.
38. Saenz HL, Engel P, Stoeckli MC, Lanz C, Raddatz G, Vayssier-Taussat M, Birtles R, Schuster SC, Dehio C (2007) Genomic analysis of Bartonella identifies type IV secretion systems as host adaptability factors. Nat Genet 39: 1469-1476.
39. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4. 0. Mol Biol Evol 24: 1596-1599.
40. Templeton AR (1998) Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history. Mol Ecol 7: 381-397.
41. Templeton AR, Boerwinkle E, Sing CF (1987) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. I. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila. Genetics 117: 343-351.
42. Templeton AR, Crandall KA, Sing CF (1992) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data: III Cladogram estimation. Genetics 132: 619-633.
43. Templeton AR, Sing CF (1993) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. IV. Nested analyses with cladogram uncertainty and recombination. Genetics 134: 659-669.
44. Welc-Fale{ogonek}ciak R, Paziewska A, Bajer A, Behnke JM, Siński E (2008) Bartonella spp. infections in rodents from different habitats in the Mazury Lake District, Northeast Poland. Vector Borne Zoonotic Dis 8: 467-474.
45. Zeaiter Z, Fournier PE, Ogata H, Raoult D (2002) Phylogenetic classification of Bartonella species by comparing groEL sequences. Int J Syst Evol Microbiol 52: 165-171.