Frequency distribution of T > C polymorphisms in the seed region of the chicken Mir-1644 gene

Proceedings - 2010 3rd International Conference on Biomedical Engineering and Informatics, BMEI 2010

Volumn 6, Issue , 2010, Pages 2570-2573

  Zhang, Chuan Sheng ^a   Geng, Li Ying ^a   Liu, Zheng Zhu ^a   Fu, Zhi Xin ^a   Ping, Shen ^a   Du, Li Xin ^b  

^a HEBEI NORMAL UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

^b INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

Bioinformatic; Chicken; mir 1644; SNP

Indexed keywords

BIOINFORMATICS ANALYSIS; BIOLOGICAL EFFECTS; BIOLOGICAL PROCESS; CHICKEN; FREQUENCY DISTRIBUTIONS; GENE POLYMORPHISM; GENETIC BACKGROUNDS; GENOTYPE FREQUENCIES; HARDY-WEINBERG EQUILIBRIUM; MICRORNAS; MIR-1644; NON-CODING RNAS; PCR-RFLP; PHENOTYPIC VARIATIONS; SINGLE NUCLEOTIDE POLYMORPHISMS; SNP; TARGET SELECTION;

BIOINFORMATICS; GENE EXPRESSION; POLYMERASE CHAIN REACTION; POLYMORPHISM;

ANIMALS;

EID: 78650643180     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/BMEI.2010.5639712     Document Type: Conference Paper

References (17)

1. D.P.Bartel " MicroRNAs: genomics, biogenesis, mechanism, and function,"Cell, vol. 116, pp. 281-297, 2004.
2. Y. Lee, K. Jeon , J.T. Lee, S.Kim and V.N. Kim ." MicroRNA maturation: Stepwise processing and subcellular localization," EMBO, vol. 21, pp.277-284, 2002.
3. Y.Lee, C.Ahn, J. Han, H. Choi, Sun G, Yan J, Noltner K, Feng J, Li H, Sarkis DA, Sommer SS, Rossi JJ. "SNPs in human miRNA genes affect biogenesis and function,"RNA,vol. 15, pp. 1640-1651. 2009.
4. Liu HC, Hicks JA, Trakooljul N, Zhao SH."Current knowledge of microRNA characterization in agricultural animals," Anim. Genet. Vol. 41, pp. 225-231,2009.
5. P.B. Siegel, J.B. Dodgson and L. Andersson," Progress from chicken genetics to the chicken genome," Poult. Sci., vol. 85, pp.2050-2060,2006.
6. S. Griffiths-Jones, H.K. Saini, S. van Dongen and A.J. Enright, " miRBase: tools for microRNA genomics," Nucleic. Acids. Res., vol. 36 ,pp.D154-158,2008.
7. Geng Liying , Zhang Chuansheng , Lixin Du. "Single nucleotide polymorphisms in chicken genomic pre-microRNA," Biodiversity Science, vol.17,pp. 248-256,2009.
8. Signer E, Kuenzle CC, Thomann PE, Hübscher U."DNA fingerprinting: improved DNA extraction from small blood samples," Nucleic Acids Res. vol.16,pp.7738,1988.
9. Enright AJ, John B, Gaul U, Tuschl T, Sander C and Marks "microRNA Target Detection," Genome Biology, 2003.
10. F.C. Yeh, R. Yang and T Boyle, POPGENE Version 1.31. Microsoft Windows based freeware for population genetic analysis. Home page address:http://www. ualberta.ca/, 1999.
11. Agresti A, "A Survey of Exact Inference for Contegency Tables," Statitical Science, vol.7,pp131-153,1992.
12. J. Wang, X. He, J. Ruan, M. Dai, J. Chen, Y. Zhang, Y. Hu, C. Ye, S. Li,L.Cong, L. Fang, B. Liu, S. Li, J. Wang, D.W. Burt, G.K. Wong, J.Yu, H.Yang, and J. Wang ," ChickVD: a sequence variation database for thechicken genome," Nucleic.Acids. Res., vol. 33, pp. 438-441, 2005.
13. Han, J., Lee, Y., Yeom, K.H., Nam, J.W., Heo, I., Rhee, J.K., Sohn, S.Y.,Cho, Y., Zhang, B.T. and Kim, V.N. "Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex," Cell, vol.125, pp.887-901, 2006. (Pubitemid 43810154)
14. M. Zuker " Mfold web server for nucleic acid folding and hybridization prediction," Nucleic. Acids. Res., vol. 31, pp. 3406- 3415 ,2003.
15. Tian T, Shu Y, Chen J, Hu Z, Xu L, Jin G, Liang J, Liu P, Zhou X, Miao R, Ma H, Chen Y, Shen H."A functional genetic variant in microRNA-196a2 is associated with increased susceptibility of lung cancer in Chinese,"Cancer Epidemiol Biomarkers Prev. vol. 18, pp. 1183-1187,2009.
16. Jazdzewski K, Murray EL, Franssila K, Jarzab B, Schoenberg DR, de la Chapelle A. "Common SNP in pre-miR-146a decreases mature miR expression and predisposes to papillary thyroid carcinoma,"Proc Natl Acad. Sci ., vol.105, pp.7269-7274, 2008. (Pubitemid 351754467)
17. Loegering DA, Ruchaud S, Earnshaw WC, Kaufmann SH. Evaluation of the role of caspase-6 in anticancer drug-induced apoptosis.Cell Death Differ. ,vol. 13,pp.346-357,2006.