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Volumn 58, Issue 1, 2011, Pages 68-74

Patterns of 5′Untranslated Region Length Distribution in Encephalitozoon cuniculi: Implications for Gene Regulation and Potential Links between Transcription and Splicing

Author keywords

Encephalitozoon cuniculi; microsporidia; splicing; transcription; untranslated region (UTR)

Indexed keywords

EXPERIMENTAL STUDY; FUNGUS; GENE EXPRESSION; GENETIC ANALYSIS; GENOME; PROTEIN;

EID: 78650635562     PISSN: 10665234     EISSN: 15507408     Source Type: Journal    
DOI: 10.1111/j.1550-7408.2010.00523.x     Document Type: Article
Times cited : (6)

References (50)
  • 2
    • 0023988840 scopus 로고
    • MRNA structures influencing translation in the yeast Saccharomyces cerevisiae
    • Baim, S. B., &, Sherman, F., 1988. mRNA structures influencing translation in the yeast Saccharomyces cerevisiae. Mol. Cell. Biol., 4: 1591-1601.
    • (1988) Mol. Cell. Biol. , vol.4 , pp. 1591-1601
    • Baim, S.B.1    Sherman, F.2
  • 5
    • 0024516581 scopus 로고
    • Importance of introns for expression of mouse ribosomal protein gene rpL32
    • Chung, S., &, Perry, R., 1989. Importance of introns for expression of mouse ribosomal protein gene rpL32. Mol. Cell. Biol., 9: 2075-2082.
    • (1989) Mol. Cell. Biol. , vol.9 , pp. 2075-2082
    • Chung, S.1    Perry, R.2
  • 6
    • 70649104052 scopus 로고    scopus 로고
    • Microsporidia: A journey through radical taxonomical revisions
    • Corradi, N., &, Keeling, P. J., 2009. Microsporidia: a journey through radical taxonomical revisions. Fungal Biol. Rev., 23: 1-8.
    • (2009) Fungal Biol. Rev. , vol.23 , pp. 1-8
    • Corradi, N.1    Keeling, P.J.2
  • 7
    • 56349096241 scopus 로고    scopus 로고
    • MRNA processing in Antonospora locustae spores
    • Corradi, N., Burri, L., &, Keeling, P. J., 2008. mRNA processing in Antonospora locustae spores. Mol. Genet. Genomics, 280: 565-574.
    • (2008) Mol. Genet. Genomics , vol.280 , pp. 565-574
    • Corradi, N.1    Burri, L.2    Keeling, P.J.3
  • 8
    • 41049110585 scopus 로고    scopus 로고
    • Comparative profiling of overlapping transcription in the compacted genomes of microsporidia Antonospora locustae and Encephalitozoon cuniculi
    • Corradi, N., Gangaeva, A., &, Keeling, P. J., 2008. Comparative profiling of overlapping transcription in the compacted genomes of microsporidia Antonospora locustae and Encephalitozoon cuniculi. Genomics, 91: 388-393.
    • (2008) Genomics , vol.91 , pp. 388-393
    • Corradi, N.1    Gangaeva, A.2    Keeling, P.J.3
  • 10
    • 0027305846 scopus 로고
    • Ribosomal protein L32 of Saccharomyces cerevisiae regulates both splicing and translation of its own transcript
    • Dabeva, M. D., &, Warner, J. R., 1993. Ribosomal protein L32 of Saccharomyces cerevisiae regulates both splicing and translation of its own transcript. J. Biol. Chem., 26: 19669-19674.
    • (1993) J. Biol. Chem. , vol.26 , pp. 19669-19674
    • Dabeva, M.D.1    Warner, J.R.2
  • 11
    • 0022476239 scopus 로고
    • Autogenous regulation of splicing of the transcript of a yeast ribosomal protein gene
    • Dabeva, M. D., Post-Beittenmiller, M., &, Warner, J. R., 1986. Autogenous regulation of splicing of the transcript of a yeast ribosomal protein gene. Proc. Natl. Acad. Sci. USA, 83: 5854-5857.
    • (1986) Proc. Natl. Acad. Sci. USA , vol.83 , pp. 5854-5857
    • Dabeva, M.D.1    Post-Beittenmiller, M.2    Warner, J.R.3
  • 13
    • 0031803072 scopus 로고    scopus 로고
    • Post-transcriptional gene regulatory mechanisms in eukaryotes
    • J. Endocrinol.
    • Day, D. A., &, Tuite, M. F., 1998. Post-transcriptional gene regulatory mechanisms in eukaryotes: an overview. J. Endocrinol., 3: 361-371.
    • (1998) An Overview , vol.3 , pp. 361-371
    • Day, D.A.1    Tuite, M.F.2
  • 14
    • 0038692119 scopus 로고    scopus 로고
    • Human housekeeping genes are compact
    • Eisenberg, E., &, Levanon, E. Y., 2003. Human housekeeping genes are compact. Trends Genet., 7: 362-365.
    • (2003) Trends Genet. , vol.7 , pp. 362-365
    • Eisenberg, E.1    Levanon, E.Y.2
  • 15
    • 71849102316 scopus 로고    scopus 로고
    • Bridging IRES elements in mRNAs to the eukaryotic translation apparatus
    • Fitzgerald, K. D., &, Semler, B. L., 2009. Bridging IRES elements in mRNAs to the eukaryotic translation apparatus. Biochim. Biophys. ActaâGene Regul. Mech., 1789: 518-528.
    • (2009) Biochim. Biophys. ActaâGene Regul. Mech. , vol.1789 , pp. 518-528
    • Fitzgerald, K.D.1    Semler, B.L.2
  • 16
    • 2442543419 scopus 로고    scopus 로고
    • Microsporidia: How can they invade other cells?
    • Franzen, C., 2004. Microsporidia: How can they invade other cells? Trends Parasitol., 20: 275-279.
    • (2004) Trends Parasitol. , vol.20 , pp. 275-279
    • Franzen, C.1
  • 18
    • 77953756763 scopus 로고    scopus 로고
    • Splicing and transcription differ between spore and intracellular life stages in the parasitic microsporidia
    • Gill, E. E., Lee, R. C. H., Corradi, N., Grisdale, C. J., Limpright, V. O., Keeling, P. J., &, Fast, N. M., 2010. Splicing and transcription differ between spore and intracellular life stages in the parasitic microsporidia. Mol. Biol. Evol., 27: 1579-1584.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 1579-1584
    • Gill, E.E.1    Lee, R.C.H.2    Corradi, N.3    Grisdale, C.J.4    Limpright, V.O.5    Keeling, P.J.6    Fast, N.M.7
  • 19
    • 1442329652 scopus 로고    scopus 로고
    • Genome-wide analysis of mRNA lengths in Saccharomyces cerevisiae
    • Hurowitz, E., &, Brown, P., 2003. Genome-wide analysis of mRNA lengths in Saccharomyces cerevisiae. Genome Biol., 5: R2.
    • (2003) Genome Biol. , vol.5
    • Hurowitz, E.1    Brown, P.2
  • 21
    • 0021109613 scopus 로고
    • Capillary zone electrophoresis
    • Jorgenson, J. W., &, Lukacs, K. D., 1983. Capillary zone electrophoresis. Science, 4621: 266-272.
    • (1983) Science , vol.4621 , pp. 266-272
    • Jorgenson, J.W.1    Lukacs, K.D.2
  • 23
    • 0037384263 scopus 로고    scopus 로고
    • Congruent evidence from alpha-tubulin and beta-tubulin gene phylogenies for a zygomycete origin of microsporidia
    • Keeling, P. J., 2003. Congruent evidence from alpha-tubulin and beta-tubulin gene phylogenies for a zygomycete origin of microsporidia. Fungal Genet. Biol., 38: 298-309.
    • (2003) Fungal Genet. Biol. , vol.38 , pp. 298-309
    • Keeling, P.J.1
  • 26
    • 0022552131 scopus 로고
    • Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes
    • Kozak, M., 1986. Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes. Cell, 2: 283-292.
    • (1986) Cell , vol.2 , pp. 283-292
    • Kozak, M.1
  • 27
    • 77955953162 scopus 로고    scopus 로고
    • Constrained intron structures in a microsporidian
    • Lee, R. C. H., Gill, E. E., Roy, S. W., &, Fast, N. M., 2010. Constrained intron structures in a microsporidian. Mol. Biol. Evol., 9: 1979-1982.
    • (2010) Mol. Biol. Evol. , vol.9 , pp. 1979-1982
    • Lee, R.C.H.1    Gill, E.E.2    Roy, S.W.3    Fast, N.M.4
  • 29
    • 34447263110 scopus 로고    scopus 로고
    • Selection for the miniaturization of highly expressed genes
    • Li, S. W., Feng, L., &, Niu, D. K., 2007. Selection for the miniaturization of highly expressed genes. Biochem. Biophys. Res. Commun., 3: 586-592.
    • (2007) Biochem. Biophys. Res. Commun. , vol.3 , pp. 586-592
    • Li, S.W.1    Feng, L.2    Niu, D.K.3
  • 30
    • 0026100266 scopus 로고
    • Intron enhancement of gene expression and the splicing efficiency of introns in maize cells
    • Luehrsen, K. R., &, Walbot, V., 1991. Intron enhancement of gene expression and the splicing efficiency of introns in maize cells. Mol. Gen. Genet., 225: 81-93.
    • (1991) Mol. Gen. Genet. , vol.225 , pp. 81-93
    • Luehrsen, K.R.1    Walbot, V.2
  • 32
    • 45549088326 scopus 로고    scopus 로고
    • The transcriptional landscape of the yeast genome defined by RNA sequencing
    • Nagalakshmi, U., Wang, Z., Waern, K., Shou, C., Raha, D., Gerstein, M., &, Snyder, M., 2008. The transcriptional landscape of the yeast genome defined by RNA sequencing. Science, 320: 1344-1349.
    • (2008) Science , vol.320 , pp. 1344-1349
    • Nagalakshmi, U.1    Wang, Z.2    Waern, K.3    Shou, C.4    Raha, D.5    Gerstein, M.6    Snyder, M.7
  • 33
    • 0037107547 scopus 로고    scopus 로고
    • On the importance of being co-transcriptional
    • Neugebauer, K. M., 2002. On the importance of being co-transcriptional. J. Cell. Sci., 115: 3865-3871.
    • (2002) J. Cell. Sci. , vol.115 , pp. 3865-3871
    • Neugebauer, K.M.1
  • 34
    • 0031593155 scopus 로고    scopus 로고
    • Structural and compositional features of untranslated regions of eukaryotic mRNAs
    • Pesole, G., Liuni, S., Grillo, G., &, Saccone, C., 1997. Structural and compositional features of untranslated regions of eukaryotic mRNAs. Gene, 1-2: 95-102.
    • (1997) Gene , vol.12 , pp. 95-102
    • Pesole, G.1    Liuni, S.2    Grillo, G.3    Saccone, C.4
  • 36
    • 0037154967 scopus 로고    scopus 로고
    • Integrating mRNA processing with transcription
    • Proudfoot, N. J., Furger, A., &, Dye, M. J., 2002. Integrating mRNA processing with transcription. Cell, 108: 501-512.
    • (2002) Cell , vol.108 , pp. 501-512
    • Proudfoot, N.J.1    Furger, A.2    Dye, M.J.3
  • 37
    • 55449088127 scopus 로고    scopus 로고
    • Folding free energies of 5′-UTRs impact post-transcriptional regulation on a genomic scale in yeast
    • Ringner, M., &, Krogh, M., 2005. Folding free energies of 5′-UTRs impact post-transcriptional regulation on a genomic scale in yeast. PLoS Comput. Biol., 7: E72.
    • (2005) PLoS Comput. Biol. , vol.7
    • Ringner, M.1    Krogh, M.2
  • 39
    • 0034887203 scopus 로고    scopus 로고
    • Creating the gene ontology resource
    • The Gene Ontology Consortium.:. Genome Res.
    • The Gene Ontology Consortium. 2001. Creating the gene ontology resource: design and implementation. Genome Res., 8: 1425-1433.
    • (2001) Design and Implementation , vol.8 , pp. 1425-1433
  • 40
    • 69849093394 scopus 로고    scopus 로고
    • Properties of untranslated regions of the S. cerevisiae genome
    • Tuller, T., Ruppin, E., &, Kupiec, M., 2009. Properties of untranslated regions of the S. cerevisiae genome. BMC Genomics, 10: 391.
    • (2009) BMC Genomics , vol.10 , pp. 391
    • Tuller, T.1    Ruppin, E.2    Kupiec, M.3
  • 41
    • 1242303422 scopus 로고    scopus 로고
    • Demonstrating internal ribosome entry sites in eukaryotic mRNAs using stringent RNA test procedures
    • Van Eden, M. E., Byrd, M. P., Sherill, K. W., &, Lloyd, R. E., 2004. Demonstrating internal ribosome entry sites in eukaryotic mRNAs using stringent RNA test procedures. RNA, 10: 720-730.
    • (2004) RNA , vol.10 , pp. 720-730
    • Van Eden, M.E.1    Byrd, M.P.2    Sherill, K.W.3    Lloyd, R.E.4
  • 42
    • 0002010651 scopus 로고    scopus 로고
    • Structure of the microsporidia
    • In: Wittner, M. (ed.),. ASM Press, Washington, DC
    • Vávra, J., &, Larsson, J. I. R., 1999. Structure of the microsporidia. In:, Wittner, M., (ed.), The Microsporidia and Microsporidiosis. ASM Press, Washington, DC. p. 7-84.
    • (1999) The Microsporidia and Microsporidiosis , pp. 7-84
    • Vávra, J.1    Larsson, J.I.R.2
  • 43
    • 0034733948 scopus 로고    scopus 로고
    • Fugu: A compact vertebrate reference genome
    • Venkatesh, B., Gilligan, P., &, Brenner, S., 2000. Fugu: a compact vertebrate reference genome. FEBS Lett., 1-2: 3-7.
    • (2000) FEBS Lett. , vol.12 , pp. 3-7
    • Venkatesh, B.1    Gilligan, P.2    Brenner, S.3
  • 44
    • 0031000833 scopus 로고    scopus 로고
    • Ribosomal protein L32 of Saccharomyces cerevisiae influences both the splicing of its own transcript and the processing of rRNA
    • Vilardell, J., &, Warner, J. R., 1997. Ribosomal protein L32 of Saccharomyces cerevisiae influences both the splicing of its own transcript and the processing of rRNA. Mol. Cell. Biol., 4: 1959-1965.
    • (1997) Mol. Cell. Biol. , vol.4 , pp. 1959-1965
    • Vilardell, J.1    Warner, J.R.2
  • 45
    • 0021959761 scopus 로고
    • Saccharomyces-cerevisiae coordinates accumulation of yeast ribosomal-proteins by modulating messenger-RNA splicing, translational initiation, and protein-turnover
    • Warner, J. R., Mitra, G., Schwindinger, W. F., Studeny, M., &, Fried, H. M., 1985. Saccharomyces-cerevisiae coordinates accumulation of yeast ribosomal-proteins by modulating messenger-RNA splicing, translational initiation, and protein-turnover. Mol. Cell. Biol., 5: 1512-1521.
    • (1985) Mol. Cell. Biol. , vol.5 , pp. 1512-1521
    • Warner, J.R.1    Mitra, G.2    Schwindinger, W.F.3    Studeny, M.4    Fried, H.M.5
  • 47
    • 0024497416 scopus 로고
    • Mutation rates differ among regions of the mammalian genome
    • Wolfe, K. H., Sharp, P. M., &, Li, W. H., 1989. Mutation rates differ among regions of the mammalian genome. Nature, 337: 283-285.
    • (1989) Nature , vol.337 , pp. 283-285
    • Wolfe, K.H.1    Sharp, P.M.2    Li, W.H.3
  • 48
    • 76549116230 scopus 로고    scopus 로고
    • Strong eukaryotic IRESs have weak secondary structure
    • Xia, X., &, Holcik, M., 2009. Strong eukaryotic IRESs have weak secondary structure. PLoS ONE, 4: e4136.
    • (2009) PLoS ONE , vol.4
    • Xia, X.1    Holcik, M.2
  • 49
    • 20144384163 scopus 로고    scopus 로고
    • Mapping of transcription start sites in Saccharomyces cerevisiae using 5′SAGE
    • Zhang, Z., &, Dietrich, F. S., 2005. Mapping of transcription start sites in Saccharomyces cerevisiae using 5′SAGE. Nucleic Acids Res., 9: 2838-2851.
    • (2005) Nucleic Acids Res. , vol.9 , pp. 2838-2851
    • Zhang, Z.1    Dietrich, F.S.2
  • 50
    • 76549116230 scopus 로고    scopus 로고
    • Strong eukaryotic IRESs have weak secondary structure
    • Xia, X., &, Holcik, M., 2009. Strong eukaryotic IRESs have weak secondary structure. PLoS ONE, 4: e4136.
    • (2009) PLoS ONE , vol.4
    • Xia, X.1    Holcik, M.2


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