Genome-wide transcription profiling of human sepsis: A systematic review

Critical Care

Volumn 14, Issue 6, 2010, Pages

  Tang, Benjamin M ^a,b   Huang, Stephen J ^a   McLean, Anthony S ^a  

^a UNIVERSITY OF SYDNEY   (Australia)

^b UNIVERSITY OF SYDNEY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

B7 ANTIGEN; CALGRANULIN A; CATHEPSIN; CD14 ANTIGEN; CD86 ANTIGEN; CHEMOKINE RECEPTOR CCR1; CHEMOKINE RECEPTOR CCR2; CHEMOKINE RECEPTOR CCR7; CHEMOKINE RECEPTOR CXCR3; GAMMA INTERFERON RECEPTOR; IMMUNOGLOBULIN ENHANCER BINDING PROTEIN; INTERFERON RECEPTOR; INTERLEUKIN 1; INTERLEUKIN 1 RECEPTOR; INTERLEUKIN 10; INTERLEUKIN 17; INTERLEUKIN 18; INTERLEUKIN 18 RECEPTOR; INTERLEUKIN 18 RECEPTOR ALPHA; INTERLEUKIN 1ALPHA; INTERLEUKIN 1BETA; INTERLEUKIN 4 RECEPTOR; INTERLEUKIN 8; JANUS KINASE; MITOGEN ACTIVATED PROTEIN KINASE; STAT PROTEIN; TOLL LIKE RECEPTOR; TRANSFORMING GROWTH FACTOR BETA; TUMOR NECROSIS FACTOR; TUMOR NECROSIS FACTOR ALPHA;

ADULT; ANTIGEN PRESENTATION; ANTIINFLAMMATORY ACTIVITY; ARTICLE; COHORT ANALYSIS; CYTOKINE RESPONSE; DISEASE SEVERITY; EMBASE; ENDOTOXEMIA; GENE EXPRESSION PROFILING; GENETIC TRANSCRIPTION; GENOMICS; HUMAN; IMMUNOCOMPETENT CELL; INFLAMMATION; LEUKOCYTE; LUNG ALVEOLUS MACROPHAGE; LYMPHOCYTE FUNCTION; LYMPHOID CELL; MEDLINE; MICROARRAY ANALYSIS; PHAGOCYTE; PRIORITY JOURNAL; RNA EXTRACTION; SEPSIS; SEPTIC SHOCK; SIGNAL TRANSDUCTION; SYSTEMATIC REVIEW; SYSTEMIC INFLAMMATORY RESPONSE SYNDROME; GENETIC ASSOCIATION; GENETICS; METHODOLOGY; REVIEW;

GENE EXPRESSION PROFILING; GENOME-WIDE ASSOCIATION STUDY; HUMANS; SEPSIS; TRANSCRIPTION, GENETIC;

EID: 78650624395     PISSN: 13648535     EISSN: 1466609X     Source Type: Journal    
DOI: 10.1186/cc9392     Document Type: Article

References (29)

1. Osuchowski MF, Welch K, Siddiqui J, Remick DG. Circulating cytokine/Inhibitor profiles reshape the understanding of the SIRS/CARS continuum in sepsis and predict mortality. J Immunol 2006, 177:1967-1974.
2. Osuchowski MF, Welch K, Yang H, Siddiqui J, Remick DG. Chronic sepsis mortality characterized by an individualized inflammatory response. J Immunol 2007, 179:623-630.
3. Gogos C, Drosou E, Bassaris H, Skoutelis A. Pro-versus anti-inflammatory cytokine profile in patients with severe sepsis: a marker for prognosis and future therapeutic options. J Infect Dis 2000, 181:176-180. 10.1086/315214, 10608764.
4. Christie J. Microarrays. Crit Care Med 2005, 33:S449-452. 10.1097/01.CCM.0000186078.26361.96, 16340418.
5. Kulesh DA, Clive DR, Zarlenga DS, Greene JJ. Identification of interferon-modulated proliferation-related cDNA sequences. PNAS 1987, 84:8453-8457. 10.1073/pnas.84.23.8453, 299562, 2446323.
6. Dupuy A, Simon RM. Critical review of published microarray studies for cancer outcome and guidelines on statistical analysis and reporting. J Natl Cancer Inst 2007, 99:147-157. 10.1093/jnci/djk018, 17227998.
7. Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, Aach J. Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat Genet 2001, 29:365-371. 10.1038/ng1201-365, 11726920.
8. Talwar S, Munson PJ, Barb J, Fiuza C, Cintron AP, Logun C, Tropea M, Khan S, Reda D, Shelhamer JH, Danner RL, Suffredini AF. Gene expression profiles of peripheral blood leukocytes after endotoxin challenge in humans. Physiol Genomics 2006, 25:203-215. 10.1152/physiolgenomics.00192.2005, 16403844.
9. Prabhakar U, Conway T, Murdock P, Mooney J, Clark S, Hedge P, Williams W. Correlation of protein and gene expression profiles of inflammatory proteins after endotoxin challenge in human subjects. DNA Cell Biol 2005, 24:410-431. 10.1089/dna.2005.24.410, 16008510.
10. Calvano SE, Xiao W, Richards DR, Felciano R, Baker H, Cho R, Chen R, Brownstein BH, Cobb JP, Tschoeke S, Miller-Graziano C, Moldawer LL, Mindrinos MN, Davis RW, Tompkins RG, Lowry SF, . Inflammatory and Host Response to Injury Large Scale Collaborative Research Program A network-based analysis of systemic inflammation in humans. Nature 2005, 437:1032-1037. 10.1038/nature03985, 16136080, Inflammatory and Host Response to Injury Large Scale Collaborative Research Program.
11. Marshall J, Vincent JL, Fink MP, Cook D, Rubenfeld G, Foster D, Faist E, Reinhart K. Measures, markers, and mediators: towards a staging system for clinical sepsis. Crit Care Med 2003, 31:1560-1567. 10.1097/01.CCM.0000065186.67848.3A, 12771633.
12. Marshall J. Such stuff as dreams are made on: mediator-directed therapy in sepsis. Nat Rev Drug Discov 2003, 2:391-405. 10.1038/nrd1084, 12750742.
13. Carlet J, Cohen J, Calandra T, Opal S, Masur H. Sepsis: time to reconsider the concept. Crit Care Med 2008, 36:1-3. 10.1097/CCM.0B013E318165B886, 18007269.
14. Prucha M, Ruryk A, Boriss H, Moller E, Zazula R, Russwurm S. Expression profiling: toward an application in sepsis diagnostics. Shock 2004, 22:29-33. 10.1097/01.shk.0000129199.30965.02, 15201698.
15. Tang B, McLean A, Dawes I, Huang S, Lin R. The use of gene-expression profiling to identify candidate genes in human sepsis. Am J Respir Crit Care Med 2007, 176:676-684. 10.1164/rccm.200612-1819OC, 17575094.
16. Tang B, McLean A, Dawes I, Huang S, Cowley M, Lin R. The gene-expression profiling of gram-positive and gram-negative sepsis in critically ill patients. Crit Care Med 2008, 36:1125-1128. 10.1097/CCM.0b013e3181692c0b, 18379237.
17. Ramilo O, Allman W, Chung W, Mejias A, Ardura M, Glaser C, Wittkowski KM, Piqueras B, Banchereau J, Palucka AK, Chaussabel D. Gene expression patterns in blood leukocytes discriminate patients with acute infections. Blood 2007, 109:2066-2077. 10.1182/blood-2006-02-002477, 1801073, 17105821.
18. Tang B, McLean A, Dawes I, Huang S, Lin R. Gene-expression profiling of peripheral blood mononuclear cells in sepsis. Crit Care Med 2009, 37:882-888. 10.1097/CCM.0b013e31819b52fd, 19237892.
19. Payen D, Lukaszewicz A, Belikova I, Faivre V, Gelin C, Russwurm S, Launay J, Sevenet N. Gene profiling in human blood leucocytes during recovery from septic shock. Intensive Care Med 2008, 34:1371-1376. 10.1007/s00134-008-1048-1, 18392609.
20. Cobb J, Moore E, Hayden D, Minei J, Cuschieri J, Yang J, Li Q, Maier R. Validation of the riboleukogram to detect ventilator-associated pneumonia after severe injury. Ann Surg 2009, 250:531-539.
21. McDunn J, Husain K, Polpitiya A, Burykin A, Ruan J, Li Q, Schierding W, Lin N, Cobb JP. Plasticity of the systemic inflammatory response to actue infection during critical illness: development of the riboleukogram. PLoS One 2008, 3:e1564.
22. Pachot A, Lepape A, Vey S, Bienvenu J, Mougin B, Monneret G. Systemic transcriptional analysis in survivor and non-survivor septic shock patients: A preliminary study. Immunol Lett 2006, 106:63-71. 10.1016/j.imlet.2006.04.010, 16765452.
23. Shanley TP, Cvijanovich N, Lin R, Allen GL, Thomas NJ, Doctor A, Kalyanaraman M, Tofil NM, Penfil S, Monaco M, Odoms K, Barnes M, Sakthivel B, Aronow BJ, Wong HR. Genome-level longitudinal expression of signaling pathways and gene networks in pediatric septic shock. Mol Med 2007, 13:495-508. 10.2119/2007-00065.Shanley, 2014731, 17932561.
24. Wong HR, Shanley TP, Sakthivel B, Cvijanovich N, Lin R, Allen GL, Thomas NJ, Doctor A, Kalyanaraman M, Tofil NM, Tofil NM, Penfil S, Monaco M, Tagavilla MA, Odoms K, Dunsmore K, Barnes M, Aronow BJ, . Genomics of Pediatric SIRS/Septic Shock Investigators Genome-level expression profiles in pediatric septic shock indicate a role for altered zinc homeostasis in poor outcome. Physiol Genomics 2007, 30:146-155. 10.1152/physiolgenomics.00024.2007, 2770262, 17374846, Genomics of Pediatric SIRS/Septic Shock Investigators.
25. Cvijanovich N, Shanley TP, Lin R, Allen GL, Thomas NJ, Checchia P, Anas N, Freishtat RJ, Monaco M, Odoms K, Sakthivel B, Wong HR, . Genomics of Pediatric SIRS/Septic Shock Investigators Validating the genomic signature of pediatric septic shock. Physiol Genomics 2008, 34:127-134. 10.1152/physiolgenomics.00025.2008, 2440641, 18460642, Genomics of Pediatric SIRS/Septic Shock Investigators.
26. Wong H, Cvijanovich N, Allen GL, Lin R, Anas N, Meyer K, Freishtat RJ, Shanley TP. Genomic expression profiling across the pediatric systemic inflammatory response syndrome, sepsis and septic shock spectrum. Crit Care Med 2009, 37:1558-1566. 10.1097/CCM.0b013e31819fcc08, 2747356, 19325468.
27. Johnson S, Lissauer M, Bochicchio G, Moore R, Cross A, Scalea T. Gene expression profiles differentiate between sterile SIRS and early sepsis. Ann Surg 2007, 245:611-621. 10.1097/01.sla.0000251619.10648.32, 1877042, 17414611.
28. Lissauer M, Johnson S, Bochicchio G, Feild C, Cross A, Hasday J, Whiteford CC, Nussbaumer WA, Towns M, Scalea T. Differential expression of toll-like receptor genes: sepsis compared with sterile inflammation 1 day before sepsis diagnosis. Shock 2009, 31:238-244. 10.1097/SHK.0b013e3181834991, 18665047.
29. Tusher VG, Tibshirani R, Chu G. Significance analysis of microarrays applied to the ionizing radiation response. PNAS 2001, 98:5116-5121. 10.1073/pnas.091062498, 33173, 11309499.