Stable coexistence of two Caldicellulosiruptor species in a de novo constructed hydrogen-producing co-culture

Microbial Cell Factories

Volumn 9, Issue , 2010, Pages

  Zeidan, Ahmad A ^a   Rådström, Peter ^a   van Niel, Ed W J ^a  

^a LUND UNIVERSITY   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

CARBON; GLUCOSAMINE; HYDROGEN; XYLOSE; GLUCOSE;

ARTICLE; BACTERIAL COUNT; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM CULTURE; CALDICELLULOSIRUPTOR KRISTJANSSONII; CALDICELLULOSIRUPTOR SACCHAROLYLTICUS; CELL FREE SYSTEM; COCULTURE; CONTINUOUS STIRRED TANK REACTOR; CONTROLLED STUDY; DILUTION; GEOGRAPHY; HABITAT; MICROBIAL POPULATION DYNAMICS; NONHUMAN; POLYMERASE CHAIN REACTION; QUANTITATIVE ANALYSIS; STEADY STATE; SUPERNATANT; THERMOPHILE; ALGORITHM; ANAEROBIC BACTERIUM; BIOLOGICAL MODEL; BIOMASS; BIOREACTOR; ECOSYSTEM; FERMENTATION; GAS CHROMATOGRAPHY; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; PH; SPECIES DIFFERENCE; TEMPERATURE;

CALDICELLULOSIRUPTOR; CALDICELLULOSIRUPTOR KRISTJANSSONII; CALDICELLULOSIRUPTOR SACCHAROLYTICUS; CALDICELLULOSIRUPTOR SACCHAROLYTICUS DSM 8903;

ALGORITHMS; BACTERIA, ANAEROBIC; BIOMASS; BIOREACTORS; CHROMATOGRAPHY, GAS; ECOSYSTEM; FERMENTATION; GLUCOSE; HYDROGEN; HYDROGEN-ION CONCENTRATION; MODELS, BIOLOGICAL; POLYMERASE CHAIN REACTION; SPECIES SPECIFICITY; TEMPERATURE; XYLOSE;

EID: 78650607487     PISSN: None     EISSN: 14752859     Source Type: Journal    
DOI: 10.1186/1475-2859-9-102     Document Type: Article

References (55)

1. Brenner K, You LC, Arnold FH. Engineering microbial consortia: a new frontier in synthetic biology. Trends Biotechnol 2008, 26:483-489. 10.1016/j.tibtech.2008.05.004, 18675483.
2. Stanbury PF, Whitaker A, Hall SJ. Principles of Fermentation Technology 2000, Butterworth Heinemann, Oxford, 2.
3. Kleerebezem R, van Loosdrecht MCM. Mixed culture biotechnology for bioenergy production. Curr Opin Biotechnol 2007, 18:207-212. 10.1016/j.copbio.2007.05.001, 17509864.
4. Weibel DB. Building communities one bacterium at a time. Proc Natl Acad Sci USA 2008, 105:18075-18076. 10.1073/pnas.0810201106, 2587591, 19020083.
5. Sieuwerts S, de Bok FA, Hugenholtz J, van Hylckama Vlieg JE. Unraveling microbial interactions in food fermentations: from classical to genomics approaches. Appl Environ Microbiol 2008, 74:4997-5007. 10.1128/AEM.00113-08, 2519258, 18567682.
6. Pfeiler EA, Klaenhammer TR. The genomics of lactic acid bacteria. Trends Microbiol 2007, 15:546-553. 10.1016/j.tim.2007.09.010, 18024129.
7. Fu N, Peiris P, Markham J, Bavor J. A novel co-culture process with Zymomonas mobilis and Pichia stipitis for efficient ethanol production on glucose/xylose mixtures. Enz Microb Technol 2009, 45:210-217.
8. Qian MY, Tian S, Li XF, Zhang J, Pan YP, Yang XS. Ethanol production from dilute-acid softwood hydrolysate by co-culture. Appl Biochem Biotechnol 2006, 134:273-283. 10.1385/ABAB:134:3:273, 16960285.
9. Mamma D, Koullas D, Fountoukidis G, Kekos D, Macris BJ, Koukios E. Bioethanol from sweet sorghum: Simultaneous saccharification and fermentation of carbohydrates by a mixed microbial culture. Process Biochem 1996, 31:377-381.
10. Collet C, Schwitzguebel JP, Peringer P. Improvement of acetate production from lactose by growing Clostridium thermolacticum in mixed batch culture. J Appl Microbiol 2003, 95:824-831. 10.1046/j.1365-2672.2003.02060.x, 12969297.
11. Taniguchi M, Tokunaga T, Horiuchi K, Hoshino K, Sakai K, Tanaka T. Production of L-lactic acid from a mixture of xylose and glucose by co-cultivation of lactic acid bacteria. Appl Microbiol Biotechnol 2004, 66:160-165. 10.1007/s00253-004-1671-x, 15558273.
12. Johnson MR, Conners SB, Montero CI, Chou CJ, Shockley KR, Kelly RM. The Thermotoga maritima phenotype is impacted by syntrophic interaction with Methanococcus jannaschii in hyperthermophilic coculture. Appl Environ Microbiol 2006, 72:811-818. 10.1128/AEM.72.1.811-818.2006, 1352257, 16391122.
13. Johnson MR, Montero CI, Conners SB, Shockley KR, Bridger SL, Kelly RM. Population density-dependent regulation of exopolysaccharide formation in the hyperthermophilic bacterium Thermotoga maritima. Mol Microbiol 2005, 55:664-674. 10.1111/j.1365-2958.2004.04419.x, 15660994.
14. Maligoy M, Mercade M, Cocaign-Bousquet M, Loubiere P. Transcriptome analysis of Lactococcus lactis in coculture with Saccharomyces cerevisiae. Appl Environ Microbiol 2008, 74:485-494. 10.1128/AEM.01531-07, 2223240, 17993564.
15. Muddiman D, Andrews G, Lewis D, Notey J, Kelly R. Part II: defining and quantifying individual and co-cultured intracellular proteomes of two thermophilic microorganisms by GeLC-MS2 and spectral counting. Anal Bioanal Chem 2010, 398:391-404. 10.1007/s00216-010-3929-8, 20582400.
16. Stolyar S, Van Dien S, Hillesland KL, Pinel N, Lie TJ, Leigh JA, Stahl DA. Metabolic modeling of a mutualistic microbial community. Mol Syst Biol 2007, 3:92. 10.1038/msb4100131, 1847946, 17353934.
17. Kato S, Haruta S, Cui ZJ, Ishii M, Igarashi Y. Stable coexistence of five bacterial strains as a cellulose-degrading community. Appl Environ Microbiol 2005, 71:7099-7106. 10.1128/AEM.71.11.7099-7106.2005, 1287685, 16269746.
18. Collet C, Gaudard O, Peringer P, Schwitzguebel JP. Acetate production from lactose by Clostridium thermolacticum and hydrogen-scavenging microorganisms in continuous culture - Effect of hydrogen partial pressure. J Biotechnol 2005, 118:328-338. 10.1016/j.jbiotec.2005.05.011, 15992956.
19. Drzyzga O, Gerritse J, Dijk JA, Elissen H, Gottschal JC. Coexistence of a sulphate-reducing Desulfovibrio species and the dehalorespiring Desulfitobacterium frappieri TCE1 in defined chemostat cultures grown with various combinations of sulphate and tetrachloroethene. Environ Microbiol 2001, 3:92-99. 10.1046/j.1462-2920.2001.00157.x, 11321548.
20. Kato S, Haruta S, Cui ZJ, Ishii M, Igarashi Y. Network relationships of bacteria in a stable mixed culture. Microb Ecol 2008, 56:403-411. 10.1007/s00248-007-9357-4, 18196313.
21. Thomas S, Sarfaraz S, Mishra LC, Iyengar L. Degradation of phenol and phenolic compounds by a defined denitrifying bacterial culture. World J Microbiol Biotechnol 2002, 18:57-63.
22. Hallenbeck PC, Ghosh D. Advances in fermentative biohydrogen production: the way forward?. Trends Biotechnol 2009, 27:287-297. 10.1016/j.tibtech.2009.02.004, 19329204.
23. Hawkes FR, Hussy I, Kyazze G, Dinsdale R, Hawkes DL. Continuous dark fermentative hydrogen production by mesophilic microflora: Principles and progress. Int J Hydrogen Energy 2007, 32:172-184.
24. Li CL, Fang HHP. Fermentative hydrogen production from wastewater and solid wastes by mixed cultures. Crit Rev Env Sci Tec 2007, 37:1-39.
25. Valdez-Vazquez I, Poggi-Varaldo HM. Hydrogen production by fermentative consortia. Ren Sust Energy Rev 2009, 13:1000-1013.
26. Hallenbeck PC. Fundamentals of the fermentative production of hydrogen. Water Sci Technol 2005, 52:21-29.
27. Thauer RK, Jungermann K, Decker K. Energy conservation in chemotropic anaerobic bacteria. Bacteriol Rev 1977, 41:100-180. 413997, 860983.
28. Zeidan AA, van Niel EWJ. Developing a thermophilic hydrogen-producing co-culture for efficient utilization of mixed sugars. Int J Hydrogen Energy 2009, 34:4524-4528.
29. Liu Y, Yu P, Song X, Qu YB. Hydrogen production from cellulose by co-culture of Clostridium thermocellum JN4 and Thermoanaerobacterium thermosaccharolyticum GD17. Int J Hydrogen Energy 2008, 33:2927-2933.
30. Mori Y. Characterization of a symbiotic coculture of Clostridium thermohydrosulfuricum YM3 and Clostridium thermocellum YM4. Appl Environ Microbiol 1990, 56:37-42. 183247, 16348106.
31. Rainey FA, Donnison AM, Janssen PH, Saul D, Rodrigo A, Bergquist PL, Daniel RM, Stackebrandt E, Morgan HW. Description of Caldicellulosiruptor saccharolyticus gen. nov., sp. nov.: An obligately anaerobic, extremely thermophilic, cellulolytic bacterium. FEMS Microbiol Lett 1994, 120:263-266. 10.1111/j.1574-6968.1994.tb07043.x, 8076802.
32. Sissons CH, Sharrock KR, Daniel RM, Morgan HW. Isolation of cellulolytic anaerobic extreme thermophiles from New Zealand thermal sites. Appl Environ Microbiol 1987, 53:832-838. 203765, 16347327.
33. Bredholt S, Sonne-Hansen J, Nielsen P, Mathrani IM, Ahring BK. Caldicellulosiruptor kristjanssonii sp nov., a cellulolytic extremely thermophilic, anaerobic bacterium. Int J Syst Bacteriol 1999, 49:991-996. 10.1099/00207713-49-3-991, 10425755.
34. van de Werken HJ, Verhaart MR, VanFossen AL, Willquist K, Lewis DL, Nichols JD, Goorissen HP, Mongodin EF, Nelson KE, van Niel EWJ, Stams AJM, Ward DE, de Vos WM, van der Oost J, Kelly RM, Kengen SWM. Hydrogenomics of the extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus. Appl Environ Microbiol 2008, 74:6720-6729. 10.1128/AEM.00968-08, 2576683, 18776029.
35. Roels JA. Energetics and Kinetics in Biotechnology 1983, Amsterdam: Elsevier.
36. de Vrije T, Mars AE, Budde MAW, Lai MH, Dijkema C, de Waard P, Claassen PAM. Glycolytic pathway and hydrogen yield studies of the extreme thermophile Caldicellulosiruptor saccharolyticus. Appl Microbiol Biotechnol 2007, 74:1358-1367. 10.1007/s00253-006-0783-x, 17216445.
37. Hild HM, Stuckey DC, Leak DJ. Effect of nutrient limitation on product formation during continuous fermentation of xylose with Thermoanaerobacter ethanolicus JW200 Fe(7). Appl Microbiol Biotechnol 2003, 60:679-686.
38. Lu WY, Wen JP, Chen Y, Sun B, Jia XQ, Liu MH, Caiyin Q. Synergistic effect of Candida maltosa HY-35 and Enterobacter aerogenes W-23 on hydrogen production. Int J Hydrogen Energy 2007, 32:1059-1066.
39. Wang AJ, Ren NQ, Shi YG, Lee DJ. Bioaugmented hydrogen production from microcrystalline cellulose using co-culture - Clostridium acetobutylicum X9 and Ethanoigenens harbinense B49. Int J Hydrogen Energy 2008, 33:912-917.
40. Yokoi H, Tokushige T, Hirose J, Hayashi S, Takasaki Y. H2 production from starch by a mixed culture of Clostridium butyricum and Enterobacter aerogenes. Biotechnol Lett 1998, 20:143-147.
41. Kim SH, Han SK, Shin HS. Effect of substrate concentration on hydrogen production and 16S rDNA-based analysis of the microbial community in a continuous fermenter. Process Biochem 2006, 41:199-207.
42. Bisaillon A, Turcot J, Hallenbeck PC. The effect of nutrient limitation on hydrogen production by batch cultures of Escherichia coli. Int J Hydrogen Energy 2006, 31:1504-1508.
43. Turcot J, Bisaillon A, Hallenbeck PC. Hydrogen production by continuous cultures of Escherchia coli under different nutrient regimes. Int J Hydrogen Energy 2008, 33:1465-1470.
44. Gavala HN, Skiadas LV, Ahring BK. Biological hydrogen production in suspended and attached growth anaerobic reactor systems. Int J Hydrogen Energy 2006, 31:1164-1175.
45. Kongjan P, Min B, Angelidaki I. Biohydrogen production from xylose at extreme thermophilic temperatures (70°C) by mixed culture fermentation. Water Res 2009, 43:1414-1424. 10.1016/j.watres.2008.12.016, 19147170.
46. Koskinen PEP, Lay CH, Puhakka JA, Lin PJ, Wu SY, Örlygsson J, Lin CY. High-efficiency hydrogen production by an anaerobic, thermophilic enrichment culture from an Icelandic hot spring. Biotechnol Bioeng 2008, 101:665-678. 10.1002/bit.21948, 18814296.
47. Hardin G. The competitive exclusion principle. Science 1960, 131:1292-1297. 10.1126/science.131.3409.1292, 14399717.
48. van Niel EWJ, Claassen PAM, Stams AJM. Substrate and product inhibition of hydrogen production by the extreme thermophile, Caldicellulosiruptor saccharolyticus. Biotechnol Bioeng 2003, 81:255-262. 10.1002/bit.10463, 12474247.
49. Willquist K, Claassen PAM, van Niel EWJ. Evaluation of the influence of CO2 on hydrogen production by Caldicellulosiruptor saccharolyticus. Int J Hydrogen Energy 2009, 34:4718-4726.
50. West SA, Griffin AS, Gardner A, Diggle SP. Social evolution theory for microorganisms. Nat Rev Microbiol 2006, 4:597-607. 10.1038/nrmicro1461, 16845430.
51. Keller L, Surette MG. Communication in bacteria: an ecological and evolutionary perspective. Nat Rev Microbiol 2006, 4:249-258. 10.1038/nrmicro1383, 16501584.
52. Shank EA, Kolter R. New developments in microbial interspecies signaling. Curr Opin Microbiol 2009, 12:205-214. 10.1016/j.mib.2009.01.003, 2709175, 19251475.
53. Miller MB, Bassler BL. Quorum sensing in bacteria. Annu Rev Microbiol 2001, 55:165-199. 10.1146/annurev.micro.55.1.165, 11544353.
54. Nichols D, Lewis K, Orjala J, Mo S, Ortenberg R, O'Connor P, Zhao C, Vouros P, Kaeberlein T, Epstein SS. Short peptide induces an "uncultivable" microorganism to grow in vitro. Appl Environ Microbiol 2008, 74:4889-4897. 10.1128/AEM.00393-08, 2519364, 18515474.
55. Burmølle M, Webb JS, Rao D, Hansen LH, Sørensen SJ, Kjelleberg S. Enhanced biofilm formation and increased resistance to antimicrobial agents and bacterial invasion are caused by synergistic interactions in multispecies biofilms. Appl Environ Microbiol 2006, 72:3916-3923. 1489630, 16751497.