Analysis of microsatellite DNA markers reveals no genetic differentiation between wild and hatchery populations of pacific threadfin in Hawaii

International Journal of Biological Sciences

Volumn 6, Issue 7, 2010, Pages 827-833

  Pan, Gang ^a,b   Yang, Jinzeng ^a,b  

^a UNIVERSITY OF HAWAII   (United States)

^b HUAZHONG AGRICULTURAL UNIVERSITY   (China)

Author keywords

Genetic differentiation; Microsatellite; Oahu islands; Pacific threadfin; Polydactylus sexfilis

Indexed keywords

POLYDACTYLUS SEXFILIS; POLYNEMIDAE;

EID: 78650572261     PISSN: 14492288     EISSN: None     Source Type: Journal    
DOI: 10.7150/ijbs.6.827     Document Type: Article

References (25)

1. Leber KM, Brennan NP, Arce SM. Recruitment patterns of cultured juvenile Pacific threadfin, Polydactylus sexfilis (Polynemidae), released along sandy marine shores in Hawaii. Bull Mar Sci 1998; 62: 389-408.
2. Ogawa TK, Ziemann DA, Bloom SWS. Feeding habits of wild and hatchery-reared Pacific threadfin, Polydactylus sexfilis (family polynemidae), in Hawaii. Rev Fish Sci 2008; 16: 317-328.
3. Ostrowski AC, Iwai T, Monahan S, Unger S, Dagdagan D, Murakawa P, Schivell A, Pigao C. Nursery production technology for Pacific threadfin (Polydactylus sexfilis). Aquaculture 1996; 139:19-29.
4. Marchant S, Haye PA, Marin SA, Winkler FM. Genetic variability revealed with microsatellite markers in an introduced population of the abalone Haliotis discus hannai Ino. Aquac Res 2009; 40: 298-304.
5. Norris AT, Bradley DG, Cunningham EP. Microsatellite genetic variation between and within farmed and wild Atlantic salmon (Salmo salar) populations. Aquaculture 1999; 180: 247-264.
6. Wang H, Iwai TJ, Zhao B, Lee CS, Yang J. Identification of microsatellite DNA markers for Pacific threadfin parentage assignment. J World Aquac Soc 2010; 41:640-647.
7. Feral JP. How useful are the genetic markers in attempts to understand and manage marine biodiversity? J Exp Mar Biol Ecol 2002; 268: 121-145.
8. Liu ZJ, Cordes FJ. DNA marker technology and their applications in aquaculture genetics. Aquaculture 2004; 238: 1-37.
9. Weber JL, May PE. Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am J Hum Genet 1989; 44:388-396.
10. Chistiakov DA, Hellemans B, Volckaert FAM. Microsatellites and their genomic distribution, evolution, function and applications: A review with special reference to fish genetics. Aquaculture 2006; 255: 1-29.
11. Yang J, Ratovitski T, Brady JP, Solomon MB, Wells KD, and Wall RJ. Expression of myostatin pro domain results in muscular transgenic mice. Mol Reprod Dev 2001; 60:351-361.
12. Brown J, Hardwick LJ, Wright AF. A simple method for rapid isolation of microsatellites from yeast artificial chromosomes. Mol Cell Probes 1995; 9: 53-57.
13. Carleton KL, Streelman JT, Lee BY, Garnhart N, Kidd M, Kocher TD. Rapid isolation of CA microsatellites from the tilapia genome. Anim Genet 2002; 33: 140-144.
14. Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucl Acids Res 1999; 27: 573-580.
15. Liu YG, Bao BL, Liu LX, Wang L, Lin H. Isolation and characterization of polymorphic microsatellite loci from RAPD product in half-smooth tongue sole (Cynoglossus semilaevis) and a test of cross-species amplification. Mol Ecol Resour 2008; 8: 202-204.
16. Van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P. MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 2004; 4: 535-538.
17. Raymond M, Rousset F. GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J Hered 1995; 86: 248-249.
18. Goudet J. FSTAT (Version 1.2): A computer program to calculate F-statistics. J Hered 1995; 86: 485-486.
19. Weir BS, Cockerham CC. Estimating F-statistics for the analysis of population structure. Evolution 1984; 38:1358-1370.
20. Excoffier L, Lischer HEL. Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 2010; 10: 564-567.
21. Cornuet JM, Luikart G. Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 1996; 144: 2001-2014.
22. DeWoody JA, Avise JC. Microsatellite variation in marine, freshwater and anadromous fishes compared with other animals. J Fish Biol 2000; 56: 461-473.
23. Liu F, Xia JH, Bai ZY, Fu JJ, Li JL, Yue GH. High genetic diversity and substantial population differentiation in grass carp (Ctenopharyngodon idella) revealed by microsatellite analysis. Aquaculture 2009; 297: 51-56.
24. Balloux F, Lugon-Moulin N. The estimation of population differentiation with microsatellite markers. Mol Ecol 2002; 11: 155-165.
25. Trippel, EA, Rideout RM, O'Reilly PT, Herbinger CM, Neil SRE, Hamilton L. Communal spawning leads to high potential for inbreeding in gadoid aquaculture. Aquaculture 2009; 296: 27-35.