High genetic diversity and substantial population differentiation in grass carp (Ctenopharyngodon idella) revealed by microsatellite analysis

Aquaculture

Volumn 297, Issue 1-4, 2009, Pages 51-56

  Liu, Feng ^a   Xia, Jun Hong ^b   Bai, Zhi Yi ^a   Fu, Jian Jun ^a   Li, Jia Le ^a,c   Yue, Gen Hua ^a,b,c  

^a SHANGHAI OCEAN UNIVERSITY   (China)

^b NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

^c Shanghai Institute of Immunology   (China)

Author keywords

Breeding; Ctenopharyngodon idella; Diversity; Grass carp

Indexed keywords

BIODIVERSITY; FISH; FRESHWATER ECOSYSTEM; GENETIC VARIATION; GENOTYPE; POLYMORPHISM; POPULATION STRUCTURE; REPRODUCTIVE BEHAVIOR; SELECTIVE BREEDING; SPECIES DIVERSITY; WILD POPULATION;

ASIA; EURASIA; MALAYSIA; SOUTHEAST ASIA;

CTENOPHARYNGODON; CTENOPHARYNGODON IDELLA; CYPRINIDAE;

EID: 70350780078     PISSN: 00448486     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquaculture.2009.09.008     Document Type: Article

References (29)

1. Balloux F., and Lugon-Moulin N. The estimation of population differentiation with microsatellite markers. Mol. Ecol. 11 (2002) 155-165
2. Cai R.K. Development History of Freshwater Culture in China (1991), China Press of Science & Technology, Beijing, China 309
3. Carlsson J., Morrison C.L., and Reece K.S. Wild and aquaculture populations of the eastern oyster compared using microsatellites. J. Hered. 97 (2006) 595-598
4. Chistiakov D.A., Hellemans B., and Volckaert F.A.M. Microsatellites and their genomic distribution, evolution, function and applications: a review with special reference to fish genetics. Aquaculture 255 (2006) 1-29
5. Cornuet J.M., and Luikart G. Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144 (1996) 2001-2014
6. DeWoody J.A., and Avise J.C. Microsatellite variation in marine, freshwater and anadromous fishes compared with other animals. J. Fish Biol. 56 (2000) 461-473
7. Excoffier L., Laval G., and Schneider S. Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evol. Bioinformatics 1 (2005) 47-50
8. FAO, 2008. Food and Agriculture Organization of the United Nations statistics 2008
9. Goldstein D.B., and Schlotterer C. Microsatellites: Evolution and Applications (1999), Oxford University Press, Oxford
10. Goudet J. FSATA (vers.1.2): a computer program to calculate F-statistics. J. Hered. 85 (1995) 485-486
11. Lewis, P.O., Zaykin, D., 2000. Genetic Data Analysis: available at http://hydrodictyon.eeb.uconn.edu/people/plewis/software.php.
12. Li S.F., Lu G.Q., and Bernatchez L. Diversity of mitochondrial DNA in the populations of silver carp, bighead carp, grass carp and black carp in the middle and lower reaches of the Yangtze River. Acta. Zool. Sin. 44 (1998) 82-93
13. Li J.L., Zhu Z.Y., Wang G.L., Bai Z.Y., and Yue G.H. Isolation and characterization of 17 polymorphic microsatellites in grass carp. Mol. Ecol. Notes 7 (2007) 1114-1116
14. Liao X.L., Yu M.U., Tian T.D., and Dong J.G. Microsatellite DNA analysis of genetic diversity of grass carp in Yangtze River system. Acta Hydrobiol. Sin. 29 (2005) 113-119
15. Liu Z.J., and Cordes J.F. DNA marker technologies and their applications in aquaculture genetics. Aquaculture 238 (2004) 1-37
16. Luikart G., Allendorf F.W., Cornuet J.M., and Sherwin W.B. Distortion of allele frequency distributions provides a test for recent population bottlenecks. J. Hered. 89 (1998) 238-247
17. Norris A.T., Bradley D.G., and Cunningham E.P. Microsatellite genetic variation between and within farmed and wild Atlantic salmon (Salmo salar) populations. Aquaculture 180 (1999) 247-264
18. Page R.D.M. TreeView, the Drawing Software for Apple Macintosh and Microsoft Windows Distributed by the Author (1998), University of Glasgow, Institute of Biomedical and Life Science
19. Rutten M.J.M., Komen H., Deerenberg R.M., Siwek M., and Bovenhuis H. Genetic characterization of four strains of Nile tilapia (Oreochromis niloticus L.) using microsatellite markers. Anim. Genet. 35 (2004) 93-97
20. Sun X.W., Liu C.Y., and Liang L.Q. Isolation of microsatellite with enrichment by magnetic beads in grass carp Ctenopharyngodon idella. J. Fish. China 4 (2005) 482-486
21. Thrower F., Guthrie C., Nielsen J., and Joyce J. A comparison of genetic variation between an anadromous steelhead, Oncorhynchus mykiss, population and seven derived populations sequestered in freshwater for 70 years. Environ. Biol. Fish. 69 (2004) 111-125
22. Weber J.L., and May P.E. Abundant class of human DNA polymorphisms which can be typed using the polymerase chain-reaction. Am. J. Hum. Genet. 44 (1989) 388-396
23. Xue G.X., Liu J., and Liu J. RAPD analysis of grass carp population in three river waters. J. Fish. Sci. China 5 (1998) 1-5
24. Yue G.H., Chen F., and Orban L. Rapid isolation and characterization of microsatellites from the genome of Asian arowana (Scleropages formosus, Osteoglossidae, Pisces). Mol. Ecol. 9 (2000) 1007-1009
25. Zhang C.L., Yu L.N., and Fang Y.L. A study on genetic diversity of wild and cultured grass cap populations using RAPD. Freshw. Fish. 40 (2004) 5-7
26. Zhang S.M., Wang D.Q., Deng H., and Yu L.N. Mitochondrial DNA variation of silver carp and grass carp in populations of the middle reaches of the Yangtze River revealed using PCR-RFLP. Acta Hydrobiol. Sin. 26 (2002) 142-147
27. Zhang Z.W., Cao Z.M., Yang H., Wang J.L., Cao J.L., Han Y.P., and Wu T.T. Microsatellites analysis on genetic variation between wild and cultured populations of Ctenopharyngodon idella. Zool. Res. 27 (2005) 189-196
28. Zhang Z.W., Han Y.P., Zhong X.M., Zhang Z.Y., Cao Z.M., and We D.D. Genetic structure analyses of grass carp populations between wild and cultured ones. J. Fish. China 14 (2007) 720-725
29. Zhu Z.Y., Lin G., Lo L.C., Xu Y.X., Renee C., and Yue G.H. Genetic analyses of Asian seabass stocks using novel polymorphic microsatellites. Aquaculture 256 (2006) 167-173