Communal spawning leads to high potential for inbreeding in gadoid aquaculture

Aquaculture

Volumn 296, Issue 1-2, 2009, Pages 27-35

  Trippel, Edward A ^a   Rideout, Rick M ^b   O'Reilly, Patrick T ^c   Herbinger, Christophe M ^d   Neil, Steven R E ^a   Hamilton, Lorraine ^c  

^a ST ANDREWS BIOLOGICAL STATION   (Canada)

^b NORTHWEST ATLANTIC FISHERIES CENTRE   (Canada)

^c BEDFORD INSTITUTE OF OCEANOGRAPHY   (Canada)

^d DALHOUSIE UNIVERSITY   (Canada)

Author keywords

Broodstock management; Genetic heterozygosity; Haddock; Inbreeding; Mate choice; Melanogrammus aeglefinus; Siblings

Indexed keywords

ALLELE; COLONIAL BREEDING; FISH CULTURE; GADOID; GENETIC VARIATION; GENOTYPE; INBREEDING; MATE CHOICE; RELATEDNESS; REPRODUCTIVE SUCCESS; SPAWNING; STOCK ASSESSMENT;

GADIFORMES; MELANOGRAMMUS; MELANOGRAMMUS AEGLEFINUS;

EID: 70249131750     PISSN: 00448486     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquaculture.2009.08.002     Document Type: Article

References (76)

1. Arnold K.E. Kin recognition in rainbowfish, Melanotaenia eachamensis: sex, sibs and shoaling. Behav. Ecol. Sociobiol. 48 (2000) 385-391
2. Ballou J.D., and Lacy R.C. Identifying genetically important individuals for management of genetic diversity in captive populations. In: Ballou J.D., Gilpin M., and Foose T. (Eds). Population Management for Survival and Recovery (1995), Columbia University Press, New York 76-111
3. Basolo A.L. Female preference for male sword length in the green swordtail, Xiphophorus helleri (Pisces: Poeciliidae). Anim. Behav. 40 (1990) 332-338
4. Beamish R.J., McFarlane G.A., and Benson A. Longevity overfishing. Prog. Oceanog. 68 (2006) 289-302
5. Bekkevold D. Male size composition affects male reproductive variance in Atlantic cod Gadus morhua L. spawning aggregations. J. Fish Biol. 69 (2006) 945-950
6. Bekkevold D., Hansen M.M., and Loeschcke V. Male reproductive competition in spawning aggregations of cod (Gadus morhua L.). Mol. Ecol. 11 (2002) 91-102
7. Berg P., and Henryon M. A comparison of mating designs for inference on genetic parameters in fish. Proceedings of the 6th World Congress on Genetics Applied to Livestock Production. Armidale, NSW, Australia (1998) 115-118
8. Berglund A., Rosenqvist G., and Svensson I. Mate choice, fecundity and sexual dimorphism in two pipefish species (Syngnathidae). Behav. Ecol. Sociobiol. 19 (1986) 301-307
9. Bondari K., and Dunham R.A. Effects of inbreeding on economic traits of channel catfish. Theor. Appl. Genet. 74 (1987) 1-9
10. Bradbury I.A., and Laurel B.J. Defining 'natal homing' in marine fish populations: comment on Svedäng et al. (2007). Mar. Ecol. Prog. Ser. 349 (2007) 307-308
11. Bremner A.A., Trippel E.A., and Terhune J.M. Sound production by adult haddock, Melanogrammus aeglefinus, in isolation, pairs and trios. Environ. Biol. Fish. 65 (2002) 359-362
12. Brown G.E., and Brown J.A. Kin discrimination in salmonids. Rev. Fish Biol. Fish. 6 (1996) 201-219
13. Brown R.C., Woolliams J.A., and McAndrew B.J. Factors influencing effective population size in communal populations of gilthead seabream, Sparus aurata. Aquaculture 247 (2005) 219-225
14. Couldridge V.C.K., and Alexander G.J. Does the time spent near a male predict female mate choice in a Malawian cichlid?. J. Fish Biol. 59 (2001) 667-672
15. DeWoody J.A., and Avise J.C. Microsatellite variation in marine, freshwater and anadromous fishes compared with other animals. J. Fish Biol. 56 (2000) 461-473
16. Farr J.A. Social behaviour patters as determinants of reproductive success in the guppy, Poecilia reticulata Peters (Pisces: Poeciliidae). An experimental study of the effects of intermale competition, female choice, and sexual selection. Behaviour 74 (1980) 38-90
17. Fitzgerald G.J., and Morrissette J. Kin recognition and choice of shoal mates by threespine sticklebacks. Ethol. Ecol. Evol. 4 (1992) 273-283
18. Fu Y.B. Patterns of the purging of deleterious genes with synergistic interactions in different breeding schemes. Theor. Appl. Genet. 98 (1999) 337-346
19. Gjerde B., Gunnes K., and Gjedrem T. Effects of inbreeding on survival and growth in rainbow trout. Aquaculture 34 (1983) 372-432
20. Gjerde B., Terjesen B.F., Barr Y., Lein I., and Thorland I. Genetic variation for juvenile growth and survival in Atlantic cod (Gadus morhua). Aquaculture 236 (2004) 167-177
21. Goudet J. FSTAT (version 1.2). A computer program to calculate F-statistics. J. Heredity 86 (1995) 485-486
22. FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3). Available from http://www.unil.ch/izea/softwares/fstat.html. Updated from Goudet (1995).
23. Haskins C.P., Haskins E.F., Mclaughlin J.J.A., and Hewitt R.E. Polymorphism and population structure in Lebistes reticulatus, an ecological study. In: Blair W.F. (Ed). Vertebrate Speciation (1961), University of Texas Press, Austin 320-395
24. Hawkins A.D., and Amorim M.C.P. Spawning sounds of the male haddock, Melanogrammus aeglefinus. Environ. Biol. Fishes 59 (2000) 29-41
25. Hedrick P.W. Purging inbreeding depression and the probability of extinction: full-sib mating. Heredity 73 (1994) 363-372
26. Herbinger C.M. Pedigree Help Manual (2005). http://herbinger.biology.dal.ca:5080/Pedigree Available at http://herbinger.biology.dal.ca:5080/Pedigree
27. Herbinger C.M., O'Reilly P.T., and Verspoor E. Unravelling first-generation pedigrees in wild endangered salmon populations using molecular genetics markers. Mol. Ecol. 15 (2006) 2261-2275
28. Herlin M., Delghandi M., Wesmajervi M., Taggart J.B., McAndrew B.J., and Penman D.J. Analysis of the parental contribution to a group of fry from a single day of spawning from a commercial Atlantic cod (Gadus morhua) breeding tank. Aquaculture 274 (2008) 218-224
29. Hoaran G., Boon E., Jongma D.N., Palsson J., Van der Veer H.W., Rijnsdorp A.D., Stam W.T., and Olsen J.L. Low effective population size and evidence for inbreeding in an overexploited flatfish, plaice (Pleuronectes platessa L.). Proc. Biol. Sci. 272 (2005) 497-503
30. Hughes K.A., Du L., Rodd F.H., and Reznick D.N. Familiarity leads to female mate preference for novel males in the guppy, Poecilia reticulata. Anim. Behav. 58 (1999) 907-916
31. Hurlbert S.H. The nonconcept of species diversity: a critique and alternative parameters. Ecology 52 (1971) 577-586
32. Hutchings J.A., Bishop T.D., and McGregor-Shaw C.R. Spawning behaviour of Atlantic cod, Gadus morhua: evidence of mate competition and mate choice in a broadcast spawner. Can. J. Fish. Aquat. Sci. 56 (1999) 97-104
33. Keller L.F., and Waller D.M. Inbreeding effects in wild populations. Trends Ecol. Evol. 17 (2002) 230-241
34. Kincaid H.L. Effects of inbreeding on rainbow trout populations. Trans. Am. Fish. Soc. 105 (1976) 273-280
35. Kincaid H.L. Inbreeding in rainbow trout (Salmo gairdneri). J. Fish. Res. Board Can. 33 (1976) 2420-2426
36. Kincaid H.L. Inbreeding in fish populations used for aquaculture. Aquaculture 33 (1983) 215-227
37. Koljonen M.L., Tähtinen J., Säisä M., and Koskiniemi J. Maintenance of genetic diversity of Atlantic salmon (Salmo salar) by captive breeding programmes and the geographic distribution of microsatellite variation. Aquaculture 212 (2002) 69-92
38. Landry C., Garant D., Duchesne P., and Bernatchez L. 'Good genes as heterozygosity': the major histocompatibility complex and mate choice in Atlantic salmon (Salmo salar). Proc. R. Soc. Lond. B 268 (2001) 1279-1285
39. Litvak M.K. The development of haddock culture in Atlantic Canada. Bull. Aquacult. Assoc. Can. 98 1 (1998) 30-33
40. Lush L., Drover D., Walsh A., Puvanendran V., and Symonds J. Gamete collection and egg quality comparison in Atlantic cod (Gadus morhua) and its importance to a family-based selective breeding program. Bull. Aquacult. Assoc. Can. 105 (2007) 31-38
41. Miller K.M., Le K.D., and Beacham T.D. Development of tri- and tetranucleotide repeat microsatellite loci in Atlantic cod (Gadus morhua). Mol. Ecol. 9 (2000) 238-239
42. Mrakovcic M., and Haley L.E. Inbreeding depression in the zebra fish, Branchydanio rerio (Hamilton Buchanan). J. Fish Biol. 15 (1979) 323-327
43. Murawski S.A., Rago P.J., and Trippel E.A. Impacts of demographic variation in spawning characteristics on reference points for fishery management. ICES J. Mar. Sci. Symp. 58 (2001) 1002-1014
44. Murua H., and Saborido-Rey F. Female reproductive strategies of marine fish species of the North Atlantic. J. Northw. Atl. Fish. Sci. 33 (2003) 23-31
45. Myers R.A., Barrowman N.J., Hutchings J.A., and Rosenburg A.A. Population dynamics and the potential for recovery of exploited fish stocks at low population levels. Science 269 (1995) 1106-1109
46. Myrberg Jr. A.A., Mohler M., and Catala J.D. Sound production by males of a coral reef fish (Pomacentrus partitus): its significance to females. Anim. Behav. 34 (1986) 913-923
47. Nei M., and Tajima F. DNA polymorphism detectable by restriction endonucleases. Genetics 97 (1981) 145-163
48. Nei M., Maruyama T., and Chakraborty R. The bottleneck effect and genetic variability in populations. Evolution 29 (1975) 1-10
49. Nomura T., and Yonezawak K. A comparison of four systems of group mating for avoiding inbreeding. Genet. Sel. Evol. 28 (1996) 141-159
50. O'Reilly P.T., Herbinger C., and Wright J.M. Analysis of parentage determination in Atlantic salmon (Salmo salar) using microsatellites. Anim. Genet. 29 (1998) 363-370
51. O'Reilly P.T., McPherson A.A., Kenchington E., Taggart C.T., Jones M.W., and Bentzen P. Isolation and characterization of tetranucleotide microsatellites from Atlantic haddock (Melanogrammus aeglefinus). Mar. Biotech. 4 (2002) 418-422
52. Rakitin A., Ferguson M.M., and Trippel E.A. Male reproductive success and body size in Atlantic cod Gadus morhua L. Mar. Biol. 138 (2001) 1077-1085
53. Raymond M., and Rousset F. GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J. Hered. 88 (1995) 248-249
54. Reynolds J.D., and Gross M.R. Female mate preference enhances offspring growth and reproduction in a fish, Poecilia reticulata. Proc. R. Soc. Lond. B 250 (1992) 57-62
55. Rideout R.M., Trippel E.A., and Litvak M.K. Effects of egg size, food supply and spawning time on early life history success of haddock Melanogrammus aeglefinus. Mar. Ecol. Prog. Ser. 285 (2005) 169-180
56. Robichaud D., and Rose G.A. Multiyear homing of Atlantic cod to a spawning ground. Can. J. Fish. Aquat. Sci. 58 (2001) 2325-2329
57. Romana-Eguia M.R.R., Ikeda M., Basiao Z.U., and Taniguchi N. Genetic changes during mass selection for growth in Nile tilapia, Oreochromis niloticus (L.), assessed by microsatellites. Aquacult. Res. 36 (2005) 69-78
58. Rowe S., and Hutchings J.A. Sound production by Atlantic cod during spawning. Trans. Am. Fish. Soc. 135 (2006) 529-538
59. Rowe S., and Hutchings J.A. A link between sound producing musculature and mating success in Atlantic cod. J. Fish Biol. 72 (2008) 500-511
60. Seppä T., Laurila A., Peuhkuri N., Piironen J., and Lower N. Early familiarity has fitness consequences for Arctic charr (Salvelinus alpinus) juveniles. Can. J. Fish. Aquat. Sci. 58 (2001) 1380-1385
61. Smith B.R., Herbinger C.M., and Merry H.R. Accurate partition of individuals into full-sib families without parental information. Genetics 158 (2001) 1329-1338
62. Suk H.Y., and Choe J.C. Females prefer males with larger first dorsal fins in the common freshwater goby. J. Fish Biol. 61 (2002) 899-914
63. Svedäng H., Righton D., and Jonsson P. Defining 'natal homing' in marine fish populations; need for inference in fishery science: reply to Bradbury and Laurel (2007). Mar. Ecol. Prog. Ser. 349 (2007) 309-310
64. Svedäng H., Righton D., and Jonsson P. Migratory behaviour of Atlantic cod Gadus morhua: natal homing is the prime stock-separating mechanism. Mar. Ecol. Prog. Ser. 345 (2007) 1-12
65. Thorsen A., Trippel E.A., and Lambert Y. Experimental methods to monitor the production and quality of eggs of captive marine fish. J. Northw. Atl. Fish. Sci. 33 (2003) 55-70
66. Trippel E.A., and Neil S.R.E. Maternal and seasonal differences in egg sizes and spawning activity of northwest Atlantic haddock (Melanogrammus aeglefinus) in relation to body size and condition. Can. J. Fish. Aquat. Sci. 61 (2004) 2097-2110
67. Trippel E.A., Kjesbu O.S., and Solemdal P. Effects of adult age and size structure on reproductive output in marine fishes. In: Chambers R.C., and Trippel E.A. (Eds). Early Life History and Recruitment in Fish Populations (1997), Chapman and Hall, London 31-62
68. Trippel E.A., Doherty C.M., Wade J., and Harmon P.R. Controlled breeding technology for haddock (Melanogrammus aeglefinus) in mated pairs. Bull. Aquacult. Assoc. Can. 98-3 (1998) 30-35
69. Turner T.F., Wares J.P., and Gold J.R. Genetic effective size is three orders of magnitude smaller than adult census size in an abundant, estuarine-dependent marine fish (Sciaenops ocellatus). Genetics 162 (2002) 1329-1339
70. Van Oosterhout C., Hutchinson W.F., Wills D.P.M., and Shipley P. Microchecker: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 4 (2004) 535-538
71. Viken Å., Fleming I.A., and Rosenqvist G. Premating avoidance of inbreeding absent in female guppies (Poecilia reticulata). Ethology 112 (2006) 716-723
72. Wang S., Hard J.J., and Utter F. Salmonid inbreeding: a review. Rev. Fish Biol. Fish. 11 (2002) 301-319
73. Ward A.J.W., and Hart P.J.B. The effects of kin and familiarity on interactions between fish. Fish Fish. 4 (2003) 348-358
74. Ward R.D., Woodwark M., and Skibinski D.O.F. A comparison of genetic diversity levels in marine, freshwater, and anadromous fishes. J. Fish Biol. 44 (1994) 213-232
75. Winemiller K.O., and Taylor D.H. Inbreeding depression in the convict cichlid, Cichlasoma nigrofasciatum. J. Fish Biol. 21 (1982) 399-402
76. Winge Ø., and Ditlevsen E. Colour inheritance and sex determination in Lebistes. Heredity 1 (1947) 65-83