Cloning and sequencing of full-length cDNAs of RNA1 and RNA2 of a Tomato black ring virus isolate from Poland

Archives of Virology

Volumn 149, Issue 4, 2004, Pages 799-807

  Jonczyk M ^a   Le Gall, O ^b   Patucha, A ^c   Borodynko, N ^a   Pospieszny, H ^a  

^a INSTITUTE OF PLANT PROTECTION NATIONAL RESEARCH INSTITUTE   (Poland)

^b CEMAGREF   (France)

^c INSTITUTE OF BIOCHEMISTRY AND BIOPHYSICS   (Poland)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; POLYPROTEIN; VIRUS PROTEIN; VIRUS RNA;

AMINO ACID SEQUENCE; ARTICLE; BIOSYNTHESIS; CHEMISTRY; COMPARATIVE STUDY; GENETICS; MOLECULAR CLONING; MOLECULAR GENETICS; NEPOVIRUS; OPEN READING FRAME; POLAND; SEQUENCE ALIGNMENT; TOMATO; VIROLOGY;

AMINO ACID SEQUENCE; CLONING, MOLECULAR; DNA, COMPLEMENTARY; LYCOPERSICON ESCULENTUM; MOLECULAR SEQUENCE DATA; NEPOVIRUS; OPEN READING FRAMES; POLAND; POLYPROTEINS; RNA, VIRAL; SEQUENCE ALIGNMENT; VIRAL PROTEINS;

LYCOPERSICON ESCULENTUM; NEPOVIRUS; TOMATO BLACK RING VIRUS;

EID: 1842764672     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-003-0261-z     Document Type: Article

References (41)

1. Argos P (1988) A sequence motif in many polymerases. Nucleic Acids Res 16: 9909-9916
2. Bazan JF, Fletterick RJ (1988) Viral cysteine proteases are homologous to the trypsin-like family of serine proteases: structural and functional implications. Proc Natl Acad Sci USA 85: 7872-7876
3. Birnboim HC (1983) A rapid alkaline extraction method for the isolation of plasmid DNA. Methods Enzymol 100: 243-255
4. Brault V, Hibrand L, Candresse T, Le Gall O, Dunez J (1989) Nucleotide sequence and genetic organization of Hungarian grapevine chrome mosaic nepovirus RNA2. Nucleic Acids Res 17: 7809-7819
5. Brown DJF, Murant AF, Trudgill DL (1989) Differences between isolates of the English serotype of tomato black ring virus in their transmissibility by an English population of Longidorus attenuates (Nematoda: Dorylaimoidea). Rev Nematol 12: 51-56
6. Brunt AA, Crabtree K, Dallwitz MJ, Gibbs AJ, Watson L (1996) Viruses of plants. CAB International, Wallingford, UK
7. Demangeat G, Hemmer O, Fritsch C, Le Gall O, Candresse T (1991) In vitro processing of the RNA2 encoded polyprotein of two nepoviruses: tomato black ring virus and grapevine chrome mosaic virus. J Gen Virol 72: 247-252
8. Dodd SM, Robinson DJ (1987) Conservation of the 3′-terminal sequences of the genome RNA species of tomato black ring virus. J Gen Virol 68: 973-978
9. Doz B, Delbos R, Dunez J (1982) Prémunition: une compétition entre souches faibles et souches sévères pour une voie commune d'expression des symptomes La sélection des plantes. INRA Editions Les colloques de l'INRA, vol 11, pp 29-44
10. Fritsch C, Mayo M, Hemmer O (1993) Properties of the satellite RNA of nepoviruses. Biochimie 75: 561-567
11. Giersch T (1986) Studies on the concentration and distribution of virus in TRSV-infected tobacco plants (N. tabacum cv. Xanthi-nc). Mededelingen van de Faculteit Landbouwwetenschappen Rijksuniversiteit Gent 51: 855-863
12. Gietz RD, Schiestl RH (1995) Transforming Yeast with DNA. Methods Mol Cell Biol 5: 255-269
13. Gorbalenya AE, Blinov VM, Donchenko AP, Koonin EV (1989) An NTP-binding motif is the most conserved sequence in a highly diverged monophyletic group of proteins involved in positive strand RNA viral replication. J Mol Evol 28: 256-268
14. Greif C, Hemmer O, Fritsch C (1988) Nucleotide sequence of tomato black ring virus RNA-1. J Gen Virol 69: 1517-1529
15. Han SS, Karasev AV, Ieki H, Iwanami T (2002) Nucleotide sequence and taxonomy of Cycas necrotic stunt virus. Arch Virol 147: 2207-2214
16. Harrison BD (1958) Relationships between beet ringspot, potato bouquet and tomato black ring viruses. J Gen Microbiol 18: 450-460
17. Harrison BD, Murant AF (1977) Nematode transmissibility of pseudo-recombinant isolates of Tomato black ring virus. Ann Appl Biol 86: 209-212
18. Hemmer O, Greif C, Dufourcq P, Reinbolt J, Fritsch C (1995) Functional characterization of the proteolytic activity of the tomato black ring nepovirus RNA-1-encoded polyprotein. Virology 206: 362-371
19. Iwanami T, Kondo Y, Kobayashi M, Han SS, Karasev AV (2001) Sequence diversity and interrelationships among isolates of satsuma dwarf-related viruses. Arch Virol 146: 807-813
20. Le Gall O, Candresse T, Dunez J (1995) A multiple alignment of the capsid protein sequences of nepoviruses and comoviruses suggests a common structure. Arch Virol 140: 2041-2053
21. Le Gall O, Candresse T, Dunez J (1995) Transfer of the 3′ non-translated region of grapevine chrome mosaic virus RNA-1 by recombination to tomato black ring virus RNA-2 in pseudo-recombinant isolates. J Gen Virol 76: 1285-1289
22. Le Gall O, Lanneau M, Candresse T, Dunez J (1995) The nucleotide sequence of the RNA-2 of an isolate from the English serotype of tomato black ring nepovirus: RNA recombination in the history of nepoviruses. J Gen Virol 76: 1279-1283
23. Margis R, Ritzenthaler C, Reinbolt J, Pinck M, Pinck L (1993) Genome organization of grapevine fanleaf nepovirus RNA2 deduced from the 122K polyprotein P2 in vitro cleavage products. J Gen Virol 74 (Pt 9): 1919-1926
24. Martelli GP, Quacquarelli A (1972) Grapevine chrome mosaic virus. In: Murant AF, Harrison BD (eds) Description of plant viruses, vol 103 CMI/AAB, Old Woking, UK
25. Mayo MA, Barker H, Harrison BD (1979) Polyadenylate in the RNA of five nepoviruses. J Gen Virol 43: 603-610
26. Mayo MA, Barker H, Harrison BD (1982) Specificity and properties of the genome-linked proteins of nepoviruses. J Gen Virol 59: 149-162
27. Mayo MA, Fritsch C (1994) A possible consensus sequence for VPg of viruses in the family Comoviridae. FEBS Lett 354: 129-130
28. Meyer M, Hemmer O, Mayo MA, Fritsch C (1986) The nucleotide sequence of tomato black ring virus RNA2. J Gen Virol 67: 1257-1271
29. Mushegian AR (1994) The putative movement domain encoded by nepovirus RNA-2 is conserved in all sequenced nepoviruses. Arch Virol 135: 437-441
30. Page RDM (1996) TREEVIEW: An application to display phylogenetic trees on personal computers. Comput Appl Biosci 12: 357-358
31. Pospieszny H, Borodynko N (1999) Methods of detection and identification of Tomato black ring nepovirus. Prog Plant Protect Res 39: 327-331
32. Ritzenthaler C, Viry M, Pinck M, Margis R, Fuchs M, Pinck L (1991) Complete nucleotide sequence and genetic organization of grapevine fanleaf nepovirus RNA1. J Gen Virol 72 (Pt 10): 2357-2365
33. Robinson DJ, Barker H, Harrison BD, Mayo MA (1980) Replication of RNA-1 of tomato black ring virus independently of RNA-2. J Gen Virol 51: 317-326
34. Robzyk K, Kassir Y (1992) A simple and highly efficient procedure for rescuing autonomous plasmids from yeast. Nucleic Acids Res 20: 3790
35. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular Cloning, a laboratory manual, 2nd edn. CSH Laboratory Press, Cold Spring Harbor, NY
36. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882
37. Thompson JR, Leone G, Lindner JL, Jelkmann W, Schoen CD (2002) Characterization and complete nucleotide sequence of Strawberry mottle virus: a tentative member of a new family of bipartite plant picorna-like viruses. J Gen Virol 83: 229-239
38. Viry M, Serghini MA, Hans F, Ritzenthaler C, Pinck M, Pinck L (1993) Biologically active transcripts from cloned cDNA of genomic grapevine fanleaf nepovirus RNAs. J Gen Virol 74 (Pt 2): 169-174
39. Wellink J, Le Gall O, Sanfacon H, Ikegami M, Jones AT (2000) Family Comoviridae. In: Fauquet CM (ed) The Seventh Report of the International Committee on Taxonomy of Viruses. Academic Press, San Diego, CA, pp 691-700
40. Wetzel T, Fuchs M, Bobko M, Krczal G (2002) Size and sequence variability of the Arabis mosaic virus protein 2A. Arch Virol 147: 1643-1653
41. Wingard A (1928) Hosts and symptoms of ring spot, a virus disease of plants. J Agricult Res 37: 127-153