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Volumn 10, Issue 4, 2010, Pages 477-492

The compact Brachypodium genome conserves centromeric regions of a common ancestor with wheat and rice

Author keywords

Brachypodium; Centromere; Rice; Synteny; Wheat

Indexed keywords

CONTIG;

EID: 78650518214     PISSN: 1438793X     EISSN: 14387948     Source Type: Journal    
DOI: 10.1007/s10142-010-0190-3     Document Type: Article
Times cited : (21)

References (73)
  • 3
    • 21644481551 scopus 로고    scopus 로고
    • Nuclear DNA amounts in angiosperms: Progress, problems and prospects
    • DOI 10.1093/aob/mci003
    • MD Bennett IJ Leitch 2005 Nuclear DNA amounts in angiosperms: progress, problems and prospects Ann Bot 95 45 90 1:CAS:528:DC%2BD2MXht1Kitbk%3D 10.1093/aob/mci003 15596457 (Pubitemid 41214450)
    • (2005) Annals of Botany , vol.95 , Issue.1 , pp. 45-90
    • Bennett, M.D.1    Leitch, I.J.2
  • 4
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: A program to analyze DNA sequences
    • DOI 10.1093/nar/27.2.573
    • G Benson 1999 Tandem repeats finder: a program to analyze DNA sequences Nucleic Acids Res 27 573 580 1:CAS:528:DyaK1MXhtVKmtrg%3D 10.1093/nar/27.2.573 9862982 (Pubitemid 29210025)
    • (1999) Nucleic Acids Research , vol.27 , Issue.2 , pp. 573-580
    • Benson, G.1
  • 5
    • 61349170174 scopus 로고    scopus 로고
    • A tale of two centromeres-diversity of structure but conservation of function in plants and animals
    • 1:CAS:528:DC%2BD1MXitVyhsb8%3D 10.1007/s10142-008-0104-9 19083033
    • J Birchler Z Gao F Han 2009 A tale of two centromeres-diversity of structure but conservation of function in plants and animals Funct Integr Genomics 9 7 13 1:CAS:528:DC%2BD1MXitVyhsb8%3D 10.1007/s10142-008-0104-9 19083033
    • (2009) Funct Integr Genomics , vol.9 , pp. 7-13
    • Birchler, J.1    Gao, Z.2    Han, F.3
  • 7
    • 33846936303 scopus 로고    scopus 로고
    • Comparison of orthologous loci from small grass genomes Brachypodium and rice: Implications for wheat genomics and grass genome annotation
    • DOI 10.1111/j.1365-313X.2006.02991.x
    • E Bossolini T Wicker PA Knobel B Keller 2007 Comparison of orthologous loci from small grass genomes Brachypodium and rice: implications for wheat genomics and grass genome annotation Plant J 49 704 717 1:CAS:528: DC%2BD2sXjtlGmtro%3D 10.1111/j.1365-313X.2006.02991.x 17270010 (Pubitemid 46233087)
    • (2007) Plant Journal , vol.49 , Issue.4 , pp. 704-717
    • Bossolini, E.1    Wicker, T.2    Knobel, P.A.3    Keller, B.4
  • 8
    • 0033978728 scopus 로고    scopus 로고
    • Phylogenetic reconstruction of the genus Brachypodium P-Beauv. (Poaceae) from combined sequences of chloroplast ndhF gene and nuclear ITS
    • 1:CAS:528:DC%2BD3cXhtFaru7w%3D 10.1007/BF00985367
    • P Catalan RG Olmstead 2000 Phylogenetic reconstruction of the genus Brachypodium P-Beauv. (Poaceae) from combined sequences of chloroplast ndhF gene and nuclear ITS Plant Syst Evol 220 1 19 1:CAS:528:DC%2BD3cXhtFaru7w%3D 10.1007/BF00985367
    • (2000) Plant Syst Evol , vol.220 , pp. 1-19
    • Catalan, P.1    Olmstead, R.G.2
  • 9
    • 0028843128 scopus 로고
    • Molecular phylogeny of the grass genus Brachypodium P-Beauv based on RFLP and RAPD analysis
    • 10.1006/bojl.1995.0018
    • P Catalan Y Shi L Armstrong J Draper CA Stace 1995 Molecular phylogeny of the grass genus Brachypodium P-Beauv based on RFLP and RAPD analysis Bot J Linnear Soc 117 263 280 10.1006/bojl.1995.0018
    • (1995) Bot J Linnear Soc , vol.117 , pp. 263-280
    • Catalan, P.1    Shi, Y.2    Armstrong, L.3    Draper, J.4    Stace, C.A.5
  • 10
    • 0031255022 scopus 로고    scopus 로고
    • Phylogeny of Poaceae Subfamily Pooideae Based on ChloroplastndhF Gene Sequences
    • DOI 10.1006/mpev.1997.0416, PII S1055790397904164
    • P Catalan EA Kellogg RG Olmstead 1997 Phylogeny of Poaceae subfamily Pooideae based on chloroplast ndhF gene sequences Mol Phylogenet Evol 8 150 166 1:STN:280:DyaK2svks1aksQ%3D%3D 10.1006/mpev.1997.0416 9299221 (Pubitemid 127350732)
    • (1997) Molecular Phylogenetics and Evolution , vol.8 , Issue.2 , pp. 150-166
    • Catalan, P.1    Kellogg, E.A.2    Olmstead, R.G.3
  • 11
    • 0036671661 scopus 로고    scopus 로고
    • Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon
    • DOI 10.1105/tpc.003079
    • Z Cheng F Dong T Langdon S Ouyang BCR Gu BFR MH J Jiang 2002 Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon Plant Cell 14 1691 1704 1:CAS:528:DC%2BD38XmslChurY%3D 10.1105/tpc.003079 12172016 (Pubitemid 35002929)
    • (2002) Plant Cell , vol.14 , Issue.8 , pp. 1691-1704
    • Cheng, Z.1    Dong, F.2    Langdon, T.3    Ouyang, S.4    Buell, C.R.5    Gu, M.6    Blattner, F.R.7    Jiang, J.8
  • 13
    • 85047683772 scopus 로고    scopus 로고
    • Brachypodium distachyon. A new model system for functional genomics in grasses
    • 1:CAS:528:DC%2BD38XjtVWnsA%3D%3D 10.1104/pp.010196 11743099
    • J Draper LAJ Mur G Jenkins GC Ghosh-Biswas P Bablak R Hasterok APM Routledge 2001 Brachypodium distachyon. A new model system for functional genomics in grasses Plant Physiol 127 1539 1555 1:CAS:528:DC%2BD38XjtVWnsA%3D%3D 10.1104/pp.010196 11743099
    • (2001) Plant Physiol , vol.127 , pp. 1539-1555
    • Draper, J.1    Mur, L.A.J.2    Jenkins, G.3    Ghosh-Biswas, G.C.4    Bablak, P.5    Hasterok, R.6    Routledge, A.P.M.7
  • 14
    • 41149135379 scopus 로고    scopus 로고
    • Micro-colinearity between rice, Brachypodium, and Triticum monococcum at the wheat domestication locus Q
    • 1:CAS:528:DC%2BD1cXjsFGisrY%3D 10.1007/s10142-008-0073-z 18210171
    • JD Faris Z Zhang JP Fellers BS Gill 2008 Micro-colinearity between rice, Brachypodium, and Triticum monococcum at the wheat domestication locus Q Funct Integr Genomics 8 149 164 1:CAS:528:DC%2BD1cXjsFGisrY%3D 10.1007/s10142-008- 0073-z 18210171
    • (2008) Funct Integr Genomics , vol.8 , pp. 149-164
    • Faris, J.D.1    Zhang, Z.2    Fellers, J.P.3    Gill, B.S.4
  • 15
    • 0035064227 scopus 로고    scopus 로고
    • Identification of Bilby, a diverged centromeric Ty1-copia retrotransposon family from cereal rye (Secale cereale L.)
    • DOI 10.1139/gen-44-2-266
    • MG Francki 2001 Identification of Bilby, a diverged centromeric Ty1-copia retrotransposon family from cereal rye (Secale cereale L.) Genome 44 266 274 1:CAS:528:DC%2BD3MXjs1Srurk%3D 10.1139/gen-44-2-266 11341737 (Pubitemid 32333541)
    • (2001) Genome , vol.44 , Issue.2 , pp. 266-274
    • Francki, M.G.1
  • 16
    • 0346666870 scopus 로고    scopus 로고
    • Physical location of a HSP70 gene homologue on the centromere of chromosome 1B of wheat (Triticum aestivum L.)
    • DOI 10.1007/s00122-001-0781-4
    • MG Francki WA Berzonsky HM Ohm JM Anderson 2002 Physical location of a HSP70 gene homologue on the centromere of chromosome 1B wheat (Triticum aestivum L.) Theor Appl Genet 104 184 191 1:CAS:528:DC%2BD38XislOgsL0%3D 10.1007/s00122-001-0781-4 12582685 (Pubitemid 36065043)
    • (2002) Theoretical and Applied Genetics , vol.104 , Issue.2-3 , pp. 184-191
    • Francki, M.G.1    Berzonsky, W.A.2    Ohm, H.W.3    Anderson, J.M.4
  • 17
    • 71949115338 scopus 로고    scopus 로고
    • A lineage-specific centromere retrotransposon in Oryza brachyantha
    • 1:CAS:528:DC%2BD1MXhs1Whtr3N 10.1111/j.1365-313X.2009.04005.x 19702667
    • D Gao N Gill HR Kim JG Walling W Zhang C Fan Y Yu J Ma P San Miguel N Jiang, et al. 2009 A lineage-specific centromere retrotransposon in Oryza brachyantha Plant J 60 820 831 1:CAS:528:DC%2BD1MXhs1Whtr3N 10.1111/j.1365-313X. 2009.04005.x 19702667
    • (2009) Plant J , vol.60 , pp. 820-831
    • Gao, D.1    Gill, N.2    Kim, H.R.3    Walling, J.G.4    Zhang, W.5    Fan, C.6    Yu, Y.7    Ma, J.8    San Miguel, P.9    Jiang, N.10
  • 18
    • 42449097595 scopus 로고    scopus 로고
    • Development of genetic and genomic research resources for Brachypodium distachyon, a new model system for grass crop research
    • DOI 10.2135/cropsci2007.06.0332tpg
    • DF Garvin YQ Gu R Hasterok SP Hazen G Jenkins TC Mockler LAJ Mur JP Vogel 2008 Development of genetic and genomic research resources for Brachypodium distachyon, a new model system for grass crop research Crop Sci 48 S69 S84 10.2135/cropsci2007.06.0332tpg (Pubitemid 351569253)
    • (2008) Crop Science , vol.48 , Issue.SUPPL. 1
    • Garvin, D.F.1    Gu, Y.-Q.2    Hasterok, R.3    Hazen, S.P.4    Jenkins, G.5    Mockler, T.C.6    Mur, L.A.J.7    Vogel, J.P.8
  • 19
    • 0018614061 scopus 로고
    • Cloning and characterization of ribosomal RNA genes from wheat and barley
    • 1:CAS:528:DyaL3cXlsFamsQ%3D%3D 10.1093/nar/7.7.1869 537913
    • WL Gerlach JR Bedbrook 1979 Cloning and characterization of ribosomal RNA genes from wheat and barley Nucleic Acids Res 7 1869 1885 1:CAS:528: DyaL3cXlsFamsQ%3D%3D 10.1093/nar/7.7.1869 537913
    • (1979) Nucleic Acids Res , vol.7 , pp. 1869-1885
    • Gerlach, W.L.1    Bedbrook, J.R.2
  • 21
    • 32544454998 scopus 로고    scopus 로고
    • Molecular characterization of Ph1 as a major chromosome pairing locus in polyploid wheat
    • DOI 10.1038/nature04434, PII NATURE04434
    • S Griffiths R Sharp TN Foote I Bertin M Wanous S Reader I Colas G Moore 2006 Molecular characterization of Ph1 as a major chromosome pairing locus in polyploid wheat Nature 439 749 752 1:CAS:528:DC%2BD28XhtFykt7c%3D 10.1038/nature04434 16467840 (Pubitemid 43237624)
    • (2006) Nature , vol.439 , Issue.7077 , pp. 749-752
    • Griffiths, S.1    Sharp, R.2    Foote, T.N.3    Bertin, I.4    Wanous, M.5    Reader, S.6    Colas, I.7    Moore, G.8
  • 22
    • 0037316006 scopus 로고    scopus 로고
    • Centromere satellites from Arabidopsis populations: Maintenance of conserved and variable domains
    • DOI 10.1101/gr.593403
    • SE Hall G Kettler D Preuss 2003 Centromere satellites from Arabidopsis populations: maintenance of conserved and variable domains Genome Res 13 195 205 1:CAS:528:DC%2BD3sXhtlCrs7c%3D 10.1101/gr.593403 12566397 (Pubitemid 36575768)
    • (2003) Genome Research , vol.13 , Issue.2 , pp. 195-205
    • Hall, S.E.1    Kettler, G.2    Preuss, D.3
  • 23
    • 70349292204 scopus 로고    scopus 로고
    • Centromere repositioning in cucurbit species: Implication of the genomic impact from centromere activation and inactivation
    • 1:CAS:528:DC%2BD1MXhtFGnur3K 10.1073/pnas.0904833106 19706458
    • Y Han Z Zhang C Liu J Liu S Huang J Jiang W Jin 2009 Centromere repositioning in cucurbit species: implication of the genomic impact from centromere activation and inactivation Proc Natl Acad Sci USA 106 14937 14941 1:CAS:528:DC%2BD1MXhtFGnur3K 10.1073/pnas.0904833106 19706458
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 14937-14941
    • Han, Y.1    Zhang, Z.2    Liu, C.3    Liu, J.4    Huang, S.5    Jiang, J.6    Jin, W.7
  • 24
    • 33744489394 scopus 로고    scopus 로고
    • Alignment of the genomes of Brachypodium distachyon and temperate cereals and grasses using bacterial artificial chromosome landing with fluorescence in situ hybridization
    • DOI 10.1534/genetics.105.049726
    • R Hasterok A Marasek IS Donnison I Armstead A Thomas IP King E Wolny D Idziak J Draper G Jenkins 2006 Alignment of the genomes of Brachypodium distachyon and temperate cereals and grasses using bacterial artificial chromosome landing with fluorescence in situ hybridization Genetics 173 349 362 1:CAS:528:DC%2BD28XlvF2itrg%3D 10.1534/genetics.105.049726 16489232 (Pubitemid 43800207)
    • (2006) Genetics , vol.173 , Issue.1 , pp. 349-362
    • Hasterok, R.1    Marasek, A.2    Donnison, I.S.3    Armstead, I.4    Thomas, A.5    King, I.P.6    Wolny, E.7    Idziak, D.8    Draper, J.9    Jenkins, G.10
  • 25
    • 15744399172 scopus 로고    scopus 로고
    • Centromeric chromatin: What makes it unique?
    • DOI 10.1016/j.gde.2005.01.004, Chromosomes and Expression Mechanisms
    • S Henikoff Y Dalal 2005 Centromere chromatin: what makes it unique? Curr Opin Genet Dev 15 177 184 1:CAS:528:DC%2BD2MXis1Kmu7k%3D 10.1016/j.gde.2005.01. 004 15797200 (Pubitemid 40410664)
    • (2005) Current Opinion in Genetics and Development , vol.15 , Issue.2 , pp. 177-184
    • Henikoff, S.1    Dalal, Y.2
  • 26
    • 0035839066 scopus 로고    scopus 로고
    • The centromere paradox: Stable inheritance with rapidly evolving DNA
    • DOI 10.1126/science.1062939
    • S Henikoff K Ahmad HS Malik 2001 The centromere paradox: stable inheritance with rapidly evolving DAN Science 203 1098 1102 10.1126/science. 1062939 (Pubitemid 32758083)
    • (2001) Science , vol.293 , Issue.5532 , pp. 1098-1102
    • Henikoff, S.1    Ahmad, K.2    Malik, H.S.3
  • 28
    • 33847043486 scopus 로고    scopus 로고
    • Construction and characterization of two BAC libraries from Brachypodium distachyon, a new model for grass genomics
    • 1:CAS:528:DC%2BD2sXlslGhsQ%3D%3D 10.1139/G06-087 17110990
    • N Huo YQ Gu GR Lazo JP Vogel D Coleman-Derr MC Luo R Thilmony DF Garvin OD Anderson 2006 Construction and characterization of two BAC libraries from Brachypodium distachyon, a new model for grass genomics Genome 49 1099 1108 1:CAS:528:DC%2BD2sXlslGhsQ%3D%3D 10.1139/G06-087 17110990
    • (2006) Genome , vol.49 , pp. 1099-1108
    • Huo, N.1    Gu, Y.Q.2    Lazo, G.R.3    Vogel, J.P.4    Coleman-Derr, D.5    Luo, M.C.6    Thilmony, R.7    Garvin, D.F.8    Anderson, O.D.9
  • 30
    • 64249106701 scopus 로고    scopus 로고
    • Structural characterization of Brachypodium genome and its syntenic relationship with rice and wheat
    • 1:CAS:528:DC%2BD1MXktFShs7s%3D 10.1007/s11103-009-9456-3 19184460
    • N Huo JP Vogel GR Lazo FM You Y Ma S McMahon J Dvorak OD Anderson M-C Luo YQ Gu 2009 Structural characterization of Brachypodium genome and its syntenic relationship with rice and wheat Plant Mol Biol 70 47 61 1:CAS:528: DC%2BD1MXktFShs7s%3D 10.1007/s11103-009-9456-3 19184460
    • (2009) Plant Mol Biol , vol.70 , pp. 47-61
    • Huo, N.1    Vogel, J.P.2    Lazo, G.R.3    You, F.M.4    Ma, Y.5    McMahon, S.6    Dvorak, J.7    Anderson, O.D.8    Luo, M.-C.9    Gu, Y.Q.10
  • 31
    • 84907150192 scopus 로고    scopus 로고
    • The map-based sequence of the rice genome
    • DOI 10.1038/nature03895
    • International Rice Genome Sequencing Project 2005 The map-based sequence of the rice genome Nature 436 793 800 10.1038/nature03895 (Pubitemid 41160631)
    • (2005) Nature , vol.436 , Issue.7052 , pp. 793-800
    • Sasaki, T.1
  • 33
    • 0346306089 scopus 로고    scopus 로고
    • A molecular view of plant centromeres
    • DOI 10.1016/j.tplants.2003.10.011
    • J Jiang JA Birchler WA Parrott RK Dawe 2003 A molecular view of plant centromeres Trends Plant Sci 8 570 575 1:CAS:528:DC%2BD3sXpsVSltbg%3D 10.1016/j.tplants.2003.10.011 14659705 (Pubitemid 38038930)
    • (2003) Trends in Plant Science , vol.8 , Issue.12 , pp. 570-575
    • Jiang, J.1    Birchler, J.A.2    Parrott, W.A.3    Dawe, R.K.4
  • 34
    • 23844553603 scopus 로고    scopus 로고
    • Molecular and functional dissection of the maize B chromosome centromere
    • DOI 10.1105/tpc.104.030643
    • WW Jin JC Lamb JM Vega RK Dawe JA Birchler J Jiang 2005 Molecular and functional dissection of the maize B chromosome centromere Plant Cell 17 1412 1423 1:CAS:528:DC%2BD2MXksVKks74%3D 10.1105/tpc.104.030643 15805482 (Pubitemid 43138194)
    • (2005) Plant Cell , vol.17 , Issue.5 , pp. 1412-1423
    • Jin, W.1    Lamb, J.C.2    Vega, J.M.3    Dawe, R.K.4    Birchler, J.A.5    Jiang, J.6
  • 35
    • 33746388441 scopus 로고    scopus 로고
    • Centromere locations and associated chromosome rearrangements in Arabidopsis lyrata and A. thaliana
    • DOI 10.1534/genetics.106.057182
    • A Kawabe B Hansson J Hagenblad A Forrest D Charlesworth 2006 Centromere locations and associated chromosome rearrangements in Arabidopsis lyrata and A. thaliana Genetics 173 1613 1619 1:CAS:528:DC%2BD28XptVeitbY%3D 10.1534/genetics.106.057182 16648590 (Pubitemid 44127662)
    • (2006) Genetics , vol.173 , Issue.3 , pp. 1613-1619
    • Kawabe, A.1    Hansson, B.2    Hagenblad, J.3    Forrest, A.4    Charlesworth, D.5
  • 36
    • 0033367409 scopus 로고    scopus 로고
    • Plant retrotransposons
    • DOI 10.1146/annurev.genet.33.1.479
    • A Kumar JL Bennetzen 1999 Plant retrotransposons Annu Rev Genet 33 479 532 1:CAS:528:DC%2BD3cXhtVSms7k%3D 10.1146/annurev.genet.33.1.479 10690416 (Pubitemid 30083131)
    • (1999) Annual Review of Genetics , vol.33 , pp. 479-532
    • Kumar, A.1    Bennetzen, J.L.2
  • 38
    • 51549086723 scopus 로고    scopus 로고
    • Structure and dynamics of retrotransposons at wheat centromeres and pericentromeres
    • 1:CAS:528:DC%2BD1cXhtV2jsbrL 10.1007/s00412-008-0161-9 18496705
    • Z Liu W Yue D Li RR-C Wang X Kong K Lu G Wang Y Dong W Jin X Zhang 2008 Structure and dynamics of retrotransposons at wheat centromeres and pericentromeres Chromosoma 117 445 456 1:CAS:528:DC%2BD1cXhtV2jsbrL 10.1007/s00412-008-0161-9 18496705
    • (2008) Chromosoma , vol.117 , pp. 445-456
    • Liu, Z.1    Yue, W.2    Li, D.3    Rr-C, W.4    Kong, X.5    Lu, K.6    Wang, G.7    Dong, Y.8    Jin, W.9    Zhang, X.10
  • 39
    • 70349471296 scopus 로고    scopus 로고
    • Genome comparisons reveal a dominant mechanism of chromosome number reduction in grasses and accelerated genome evolution in Triticeae
    • 1:CAS:528:DC%2BD1MXhtFyjsLbJ 10.1073/pnas.0908195106 19717446
    • MC Luo KR Deal ED Akhunov AR Akhunova OD Anderson JA Anderson N Blake MT Clegg D Coleman-Derr EJ Conley, et al. 2009 Genome comparisons reveal a dominant mechanism of chromosome number reduction in grasses and accelerated genome evolution in Triticeae Proc Natl Acad Sci USA 106 15780 15785 1:CAS:528:DC%2BD1MXhtFyjsLbJ 10.1073/pnas.0908195106 19717446
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 15780-15785
    • Luo, M.C.1    Deal, K.R.2    Akhunov, E.D.3    Akhunova, A.R.4    Anderson, O.D.5    Anderson, J.A.6    Blake, N.7    Clegg, M.T.8    Coleman-Derr, D.9    Conley, E.J.10
  • 40
    • 33645508488 scopus 로고    scopus 로고
    • Mechanisms of chromosome number reduction in Arabidopsis thaliana and related Brassicaceae species
    • 1:CAS:528:DC%2BD28XjsVGltL0%3D 10.1073/pnas.0510791103 16549785
    • MA Lysak A Berr A Pecinka R Schmidt K McBreen I Schubert 2006 Mechanisms of chromosome number reduction in Arabidopsis thaliana and related Brassicaceae species Proc Natl Acad Sci USA 103 5224 5229 1:CAS:528:DC%2BD28XjsVGltL0%3D 10.1073/pnas.0510791103 16549785
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 5224-5229
    • Lysak, M.A.1    Berr, A.2    Pecinka, A.3    Schmidt, R.4    McBreen, K.5    Schubert, I.6
  • 41
    • 0000444790 scopus 로고
    • Localization of tandemly repeated DNA sequences in Arabidopsis thaliana
    • 10.1111/j.1365-313X.1991.00159.x
    • J Maluszynska JS Heslop-Harrison 1991 Localization of tandemly repeated DNA sequences in Arabidopsis thaliana Plant J 1 159 166 10.1111/j.1365-313X. 1991.00159.x
    • (1991) Plant J , vol.1 , pp. 159-166
    • Maluszynska, J.1    Heslop-Harrison, J.S.2
  • 42
    • 0037433054 scopus 로고    scopus 로고
    • LTR STRUC: A novel search and identification program for LTR retrotransposons
    • DOI 10.1093/bioinformatics/btf878
    • EM McCarthy JF McDonald 2003 LTR STRUC: a novel search and identification program for LTR retrotransposons Bioinformatics 19 362 367 1:CAS:528: DC%2BD3sXit1ygt7k%3D 10.1093/bioinformatics/btf878 12584121 (Pubitemid 36284935)
    • (2003) Bioinformatics , vol.19 , Issue.3 , pp. 362-367
    • McCarthy, E.M.1    McDonald, J.F.2
  • 43
    • 0031732044 scopus 로고    scopus 로고
    • Retrotransposon-related DNA sequences in the centromeres of grass chromosomes
    • 1:CAS:528:DyaK1MXitVeksA%3D%3D 9832537
    • JT Miller F Dong SA Jackson J Song J Jiang 1998 Retrotransposon-related DNA sequences in the centromeres of grass chromosomes Genetics 150 1615 1623 1:CAS:528:DyaK1MXitVeksA%3D%3D 9832537
    • (1998) Genetics , vol.150 , pp. 1615-1623
    • Miller, J.T.1    Dong, F.2    Jackson, S.A.3    Song, J.4    Jiang, J.5
  • 45
    • 16344393155 scopus 로고    scopus 로고
    • Structure, divergence, and distribution of the CRR centromeric retrotransposon family in rice
    • DOI 10.1093/molbev/msi069
    • K Nagaki P Neumann D Zhang S Ouyang CR Buell Z Cheng J Jiang 2005 Structure, divergence, and distribution of the CRR centromeric retrotransposon family in rice Mol Biol Evol 22 845 855 1:CAS:528:DC%2BD2MXjtFais7o%3D 10.1093/molbev/msi069 15616142 (Pubitemid 40471399)
    • (2005) Molecular Biology and Evolution , vol.22 , Issue.4 , pp. 845-855
    • Nagaki, K.1    Neumann, P.2    Zhang, D.3    Ouyang, S.4    Buell, C.R.5    Cheng, Z.6    Jiang, J.7
  • 46
    • 41549124880 scopus 로고    scopus 로고
    • Brachypodium distachyon: Making hay with a wild grass
    • 1:CAS:528:DC%2BD1cXksleisrk%3D 10.1016/j.tplants.2008.01.007 18343709
    • M Opanowicz P Vain J Draper D Parker JH Doonan 2008 Brachypodium distachyon: making hay with a wild grass Trends Plant Sci 13 172 177 1:CAS:528:DC%2BD1cXksleisrk%3D 10.1016/j.tplants.2008.01.007 18343709
    • (2008) Trends Plant Sci , vol.13 , pp. 172-177
    • Opanowicz, M.1    Vain, P.2    Draper, J.3    Parker, D.4    Doonan, J.H.5
  • 49
    • 0032419941 scopus 로고    scopus 로고
    • A TY3/GYPSY retrotransposon-like sequence localizes to the centromeric regions of cereal chromosomes
    • DOI 10.1046/j.1365-313X.1998.00341.x
    • GG Presting L Malysheva J Fuchs I Schubert 1998 A Ty3-gypsy retrotransposon-like sequence localizes to the centromeric regions of cereal chromosomes Plant J 16 721 728 1:CAS:528:DyaK1MXotlKmtw%3D%3D 10.1046/j.1365-313x.1998.00341.x 10069078 (Pubitemid 29083516)
    • (1998) Plant Journal , vol.16 , Issue.6 , pp. 721-728
    • Presting, G.G.1    Malysheva, L.2    Fuchs, J.3    Schubert, I.4
  • 51
    • 34249707201 scopus 로고    scopus 로고
    • Complex genome rearrangements reveal evolutionary dynamics of pericentromeric regions in the Triticeae
    • DOI 10.1139/G06-123
    • LL Qi B Friebe BS Gill 2006 Complex genome rearrangements reveal evolutionary dynamics of pericentromeric regions in the Triticeae Genome 49 1628 1639 1:CAS:528:DC%2BD2sXkvFeit7s%3D 10.1139/G06-123 17426778 (Pubitemid 46826711)
    • (2006) Genome , vol.49 , Issue.12 , pp. 1628-1639
    • Qi, L.1    Friebe, B.2    Gill, B.S.3
  • 52
    • 71549132513 scopus 로고    scopus 로고
    • A molecular-cytogenetic method for locating genes to pericentromeric regions facilitates a genome-wide comparison of synteny between the centromeric regions of wheat and rice
    • 1:CAS:528:DC%2BC3cXisVGktw%3D%3D 10.1534/genetics.109.107409 19797045
    • LL Qi B Friebe P Zhang BS Gill 2009 A molecular-cytogenetic method for locating genes to pericentromeric regions facilitates a genome-wide comparison of synteny between the centromeric regions of wheat and rice Genetics 183 1235 1247 1:CAS:528:DC%2BC3cXisVGktw%3D%3D 10.1534/genetics.109.107409 19797045
    • (2009) Genetics , vol.183 , pp. 1235-1247
    • Qi, L.L.1    Friebe, B.2    Zhang, P.3    Gill, B.S.4
  • 53
    • 78650523580 scopus 로고    scopus 로고
    • Arabidopsis thaliana centromere regions: Genetic map positions and repetitive DNA structure
    • EK Round SK Flowers EJ Richards 1997 Arabidopsis thaliana centromere regions: genetic map positions and repetitive DNA structure Genome Res 91 1007 1019
    • (1997) Genome Res , vol.91 , pp. 1007-1019
    • Round, E.K.1    Flowers, S.K.2    Richards, E.J.3
  • 54
    • 43549097168 scopus 로고    scopus 로고
    • Identification and characterization of shared duplications between rice and wheat provide new insight into grass genome evolution
    • DOI 10.1105/tpc.107.056309
    • J Salse S Bolot M Throude V Jouffe B Piegu UM Quraishi T Calcagno R Cooke M Delseny C Feuillet 2008 Identification and characterization of shared duplications between rice and wheat provide new insight into grass genome evolution Plant Cell 20 11 24 1:CAS:528:DC%2BD1cXjtFCgt7o%3D 10.1105/tpc.107.056309 18178768 (Pubitemid 352844030)
    • (2008) Plant Cell , vol.20 , Issue.1 , pp. 11-24
    • Salse, J.1    Bolot, S.2    Throude, M.3    Jouffe, V.4    Piegu, B.5    Quraishi, U.M.6    Calcagno, T.7    Cooke, R.8    Delseny, M.9    Feuillet, C.10
  • 55
    • 0035049103 scopus 로고    scopus 로고
    • Identification and physical localization of useful genes and markers to a major gene-rich region on wheat 1 S chromosomes
    • 1:CAS:528:DC%2BD3MXjsFemtbw%3D 11290727
    • D Sandhu JA Champoux SN Bondareva KS Gill 2001 Identification and physical localization of useful genes and markers to a major gene-rich region on wheat 1 S chromosomes Genetics 157 1735 1747 1:CAS:528:DC%2BD3MXjsFemtbw%3D 11290727
    • (2001) Genetics , vol.157 , pp. 1735-1747
    • Sandhu, D.1    Champoux, J.A.2    Bondareva, S.N.3    Gill, K.S.4
  • 57
    • 38349001431 scopus 로고    scopus 로고
    • Centromeric retrotransposon lineages predate the maize/rice divergence and differ in abundance and activity
    • 1:CAS:528:DC%2BD1cXltVKgtw%3D%3D 10.1007/s00438-007-0302-5 18000683
    • A Sharma GG Presting 2008 Centromeric retrotransposon lineages predate the maize/rice divergence and differ in abundance and activity Mol Genet Genomics 279 133 147 1:CAS:528:DC%2BD1cXltVKgtw%3D%3D 10.1007/s00438-007-0302-5 18000683
    • (2008) Mol Genet Genomics , vol.279 , pp. 133-147
    • Sharma, A.1    Presting, G.G.2
  • 58
    • 0027142123 scopus 로고
    • Ribosomal DNA variation and its phylogenetic implications in the genus Brachypodium (Poaceae)
    • 1:CAS:528:DyaK2cXjtF2mu7w%3D 10.1007/BF00937726
    • Y Shi J Draper C Stace 1993 Ribosomal DNA variation and its phylogenetic implications in the genus Brachypodium (Poaceae) Plant Syst Evol 188 125 138 1:CAS:528:DyaK2cXjtF2mu7w%3D 10.1007/BF00937726
    • (1993) Plant Syst Evol , vol.188 , pp. 125-138
    • Shi, Y.1    Draper, J.2    Stace, C.3
  • 60
    • 76749150030 scopus 로고    scopus 로고
    • Genome sequencing and analysis of the model grass Brachypodium distachyon
    • The International Brachypodium Initiative. 10.1038/nature08747
    • The International Brachypodium Initiative 2010 Genome sequencing and analysis of the model grass Brachypodium distachyon Nature 463 763 768 10.1038/nature08747
    • (2010) Nature , vol.463 , pp. 763-768
  • 62
    • 0024379003 scopus 로고
    • Long-range organization of tandem arrays of α satellite DNA at the centromeres of human chromosomes: High-frequency array-length polymorphism and meiotic stability
    • DOI 10.1073/pnas.86.23.9394
    • R Wevrick HF Willard 1989 Long-range organization of tandem arrays of a satellite DNA at the centromeres of human chromosomes: high frequency array-length polymorphism and meiotic stability Proc Natl Acad Sci USA 86 9394 9398 1:CAS:528:DyaK3cXkvFyisQ%3D%3D 10.1073/pnas.86.23.9394 2594775 (Pubitemid 20010432)
    • (1989) Proceedings of the National Academy of Sciences of the United States of America , vol.86 , Issue.23 , pp. 9394-9398
    • Wevrick, R.1    Willard, H.F.2
  • 63
    • 73649146539 scopus 로고    scopus 로고
    • Maize centromere structure and evolution: Sequence analysis of centromeres 2 and 5 reveals dynamic loci shaped primarily by retrotransposons
    • 10.1371/journal.pgen.1000743
    • TK Wolfgruber A Sharma KL Schneider PS Albert DH Koo J Shi Z Gao F Han H Lee R Xu, et al. 2009 Maize centromere structure and evolution: sequence analysis of centromeres 2 and 5 reveals dynamic loci shaped primarily by retrotransposons PLoS Genet 5 e100743 10.1371/journal.pgen.1000743
    • (2009) PLoS Genet , vol.5 , pp. 100743
    • Wolfgruber, T.K.1    Sharma, A.2    Schneider, K.L.3    Albert, P.S.4    Koo, D.H.5    Shi, J.6    Gao, Z.7    Han, F.8    Lee, H.9    Xu, R.10
  • 64
    • 7444271429 scopus 로고    scopus 로고
    • Evolutionary dynamics of transposable elements at the centromere
    • DOI 10.1016/j.tig.2004.09.011, PII S0168952504002835
    • LH Wong KHA Choo 2004 Evolutionary dynamics of transposable elements at the centromere Trends Genet 20 611 616 1:CAS:528:DC%2BD2cXpt1Whtbs%3D 10.1016/j.tig.2004.09.011 15522456 (Pubitemid 39441279)
    • (2004) Trends in Genetics , vol.20 , Issue.12 , pp. 611-616
    • Wong, L.H.1    Choo, K.H.A.2
  • 66
    • 71949100770 scopus 로고    scopus 로고
    • Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure
    • 1:CAS:528:DC%2BD1MXhs1Whtr3M 10.1111/j.1365-313X.2009.04002.x 19702669
    • J Wu M Fujisawa Z Tian H Yamagata K Kamiya M Shibata S Hosokawa Y Ito M Hamada S Katagir, et al. 2009 Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure Plant J 60 805 819 1:CAS:528:DC%2BD1MXhs1Whtr3M 10.1111/j.1365-313X.2009.04002.x 19702669
    • (2009) Plant J , vol.60 , pp. 805-819
    • Wu, J.1    Fujisawa, M.2    Tian, Z.3    Yamagata, H.4    Kamiya, K.5    Shibata, M.6    Hosokawa, S.7    Ito, Y.8    Hamada, M.9    Katagir, S.10
  • 67
    • 33644823241 scopus 로고    scopus 로고
    • Transcription and histone modifications in the recombination-free region spanning a rice centromere
    • 1:CAS:528:DC%2BD2MXhtlersL%2FK 10.1105/tpc.105.037945 16272428
    • HH Yan W Jin K Nagaki S Tian S Ouyang CR Buell PB Talbert S Henikoff J Jiang 2005 Transcription and histone modifications in the recombination-free region spanning a rice centromere Plant Cell 17 3227 3238 1:CAS:528: DC%2BD2MXhtlersL%2FK 10.1105/tpc.105.037945 16272428
    • (2005) Plant Cell , vol.17 , pp. 3227-3238
    • Yan, H.H.1    Jin, W.2    Nagaki, K.3    Tian, S.4    Ouyang, S.5    Buell, C.R.6    Talbert, P.B.7    Henikoff, S.8    Jiang, J.9
  • 71
    • 20144366003 scopus 로고    scopus 로고
    • The genomes of Oryza sativa: A history of duplications
    • DOI 10.1371/journal.pbio.0030038, e38
    • J Yu J Wang W Lin S Li H Li J Zhou P Ni W Dong S Hu C Zeng, et al. 2005 The genomes of Oryza sativa: a history of duplications PLoS Biol 3 e38 10.1371/journal.pbio.0030038 15685292 (Pubitemid 40412646)
    • (2005) PLoS Biology , vol.3 , Issue.2 , pp. 0266-0281
    • Yu, J.1    Wang, J.2    Lin, W.3    Li, S.4    Li, H.5    Zhou, J.6    Ni, P.7    Dong, W.8    Hu, S.9    Zeng, C.10
  • 72
    • 1842741224 scopus 로고    scopus 로고
    • BAC-FISH in wheat identifies chromosome landmarks consisting of different types of transposable elements
    • DOI 10.1007/s00412-004-0273-9
    • P Zhang WL Li J Fellers B Friebe BS Gill 2004 BAC-FISH in wheat identifies chromosome landmarks consisting of different types of transposable elements Chromosoma 112 288 299 1:CAS:528:DC%2BD2cXisV2isb0%3D 10.1007/s00412-004-0273-9 14986017 (Pubitemid 38477258)
    • (2004) Chromosoma , vol.112 , Issue.6 , pp. 288-299
    • Zhang, P.1    Li, W.2    Fellers, J.3    Friebe, B.4    Gill, B.S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.