Differential evolution of voltage-gated sodium channels in tetrapods and teleost fishes

Molecular Biology and Evolution

Volumn 28, Issue 1, 2011, Pages 859-871

  Widmark, Jenny ^a   Sundström, Görel ^a   Ocampo Daza, Daniel ^a   Larhammar, Dan ^a  

^a UPPSALA UNIVERSITY   (Sweden)

Author keywords

activin receptor; AT AC intron; CSRNP (cysteine serine rich nuclear protein); HOX; TGF receptor; voltage gated sodium channel

Indexed keywords

ACTIVIN RECEPTOR; CYSTEINE; NUCLEAR PROTEIN; SERINE; TRANSFORMING GROWTH FACTOR BETA RECEPTOR 3; UNCLASSIFIED DRUG; VOLTAGE GATED SODIUM CHANNEL; VOLTAGE GATED SODIUM CHANNEL 10A; VOLTAGE GATED SODIUM CHANNEL 11A; VOLTAGE GATED SODIUM CHANNEL 1A; VOLTAGE GATED SODIUM CHANNEL 2A; VOLTAGE GATED SODIUM CHANNEL 3A; VOLTAGE GATED SODIUM CHANNEL 4A; VOLTAGE GATED SODIUM CHANNEL 5A; VOLTAGE GATED SODIUM CHANNEL 6A; VOLTAGE GATED SODIUM CHANNEL 7A; VOLTAGE GATED SODIUM CHANNEL 8A; VOLTAGE GATED SODIUM CHANNEL 9A;

ARTICLE; CHROMOSOME POSITIONING; ERROR; EVOLUTIONARY ADAPTATION; EVOLUTIONARY DEVELOPMENTAL BIOLOGY; GENE CLUSTER; GENE DUPLICATION; GENE LOCATION; GENE SEQUENCE; GENE TRANSLOCATION; GENETIC DATABASE; GENOME; HOX GENE; INTRON; MOLECULAR PHYLOGENY; MULTIGENE FAMILY; NONHUMAN; PHYLOGENETIC TREE; PHYLOGENY; PROTEIN FAMILY; SPECIES DISTRIBUTION; TELEOST; TETRAPOD; VERTEBRATE;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; BIOLOGICAL EVOLUTION; EVOLUTION, MOLECULAR; FISHES; HUMANS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; PHYLOGENY; PROTEIN CONFORMATION; PROTEIN ISOFORMS; PROTEIN SUBUNITS; SEQUENCE ALIGNMENT; SODIUM CHANNELS;

AMNIOTA; EUTHERIA; MAMMALIA; TELEOSTEI; TETRAPODA; VERTEBRATA;

EID: 78650498923     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msq257     Document Type: Article

References (51)

1. Abascal F, Zardoya R, Posada D. 2005. ProtTest: selection of best-fit models of protein evolution. Bioinformatics. 21:2104-2105.
2. Akopian AN, Sivilotti L, Wood JN. 1996. A tetrodotoxin-resistant voltage-gated sodium channel expressed by sensory neurons. Nature. 379:257-262.
3. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol. 215:403-410.
4. Burge C, Karlin S. 1997. Prediction of complete gene structures in human genomic DNA. J Mol Biol. 268:78-94.
5. Burke RD, Angerer LM, Elphick MR, et al. (22 co-authors). 2006. A genomic view of the sea urchin nervous system. Dev Biol. 300:434-460.
6. Catterall WA, Goldin AL, Waxman SG. 2005. International Union of Pharmacology. XLVII. Nomenclature and structure-function relationships of voltage-gated sodium channels. Pharmacol Rev. 57:397-409.
7. Dyer JR, Johnston WL, Castellucci VF, Dunn RJ. 1997. Cloning and tissue distribution of the Aplysia Na\+ channel alpha-subunit cDNA. DNA Cell Biol. 16:347-356.
8. Fang X, Djouhri L, Black JA, Dib-Hajj SD, Waxman SG, Lawson SN. 2002. The presence and role of the tetrodotoxin-resistant sodium channel Na(v)1.9 (NaN) in nociceptive primary afferent neurons. J Neurosci. 22:7425-7433.
9. Feng G, Deak P, Chopra M, Hall LM. 1995. Cloning and functional analysis of TipE, a novel membrane protein that enhances Drosophila para sodium channel function. Cell. 82:1001-1011.
10. Finn RD, Mistry J, Tate J, et al. (14 co-authors). 2010. The Pfam protein families database. Nucleic Acids Res. 38:D211-D222.
11. George AL Jr, Knittle TJ, Tamkun MM. 1992. Molecular cloning of an atypical voltage-gated sodium channel expressed in human heart and uterus: evidence for a distinct gene family. Proc Natl Acad Sci USA. 89:4893-4897.
12. Goldin AL. 2002. Evolution of voltage-gated Na(\+) channels. J Exp Biol. 205:575-584.
13. Goldin AL, Barchi RL, Caldwell JH, et al. (15 co-authors). 2000. Nomenclature of voltage-gated sodium channels. Neuron. 28:365-368.
14. Heinemann SH, Terlau H, Stuhmer W, Imoto K, Numa S. 1992. Calcium channel characteristics conferred on the sodium channel by single mutations. Nature. 356:441-443.
15. Hill AS, Nishino A, Nakajo K, Zhang GX, Fineman JR, Selzer ME, Okamura Y, Cooper EC. 2008. Ion channel clustering at the axon initial segment and node of Ranvier evolved sequentially in early chordates. PLoS Genetics. 4:e1000317
16. Huminiecki L, Goldovsky L, Freilich S, Moustakas A, Ouzounis C, Heldin CH. 2009. Emergence, development and diversification of the TGF-beta signalling pathway within the animal kingdom. BMC Evol Biol. 9:28.
17. Jaillon O, Aury JM, Brunet F, et al. (61 co-authors). 2004. Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature 431:946-957.
18. Kasahara M, Naruse K, Sasaki S, et al. (38 co-authors). 2007. The medaka draft genome and insights into vertebrate genome evolution. Nature 447:714-719.
19. Kohrman DC, Harris JB, Meisler MH. 1996. Mutation detection in the med and medJ alleles of the sodium channel Scn8a. Unusual splicing due to a minor class AT-AC intron. J Biol Chem. 271:17576-17581.
20. Larhammar D, Salaneck E. 2004. Molecular evolution of NPY receptor subtypes. Neuropeptides 38:141-151.
21. Larkin MA, Blackshields G, Brown NP, et al. (13 co-authors). 2007. Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948.
22. Lopreato GF, Lu Y, Southwell A, Atkinson NS, Hillis DM, Wilcox TP, Zakon HH. 2001. Evolution and divergence of sodium channel genes in vertebrates. Proc Natl Acad Sci USA. 98:7588-7592.
23. Loughney K, Kreber R, Ganetzky B. 1989. Molecular analysis of the para locus, a sodium channel gene in Drosophila. Cell 58:1143-1154.
24. Lundin LG. 1993. Evolution of the vertebrate genome as reflected in paralogous chromosomal regions in man and the house mouse. Genomics 16:1-19.
25. Lundin LG, Larhammar D. 1998. Paralogous genes and nervous systems. Genet Psychiatr Disord. 69:27-56.
26. Meisler MH, Plummer NW, Burgess DL, Buchner DA, Sprunger LK. 2004. Allelic mutations of the sodium channel SCN8A reveal multiple cellular and physiological functions. Genetica 122:37-45.
27. Noda M. 2006. The subfornical organ, a specialized sodium channel, and the sensing of sodium levels in the brain. Neuroscientist 12:80-91.
28. Novak AE, Jost MC, Lu Y, Taylor AD, Zakon HH, Ribera AB. 2006. Gene duplications and evolution of vertebrate voltage-gated sodium channels. J Mol Evol. 63:208-221.
29. Piontkivska H, Hughes AL. 2003. Evolution of vertebrate voltage-gated ion channel alpha chains by sequential gene duplication. J Mol Evol. 56:277-285.
30. Plummer NW, Meisler MH. 1999. Evolution and diversity of mammalian sodium channel genes. Genomics 57:323-331.
31. Putnam NH, Butts T, Ferrier DE, et al. (37 co-authors). 2008. The amphioxus genome and the evolution of the chordate karyotype. Nature 453:1064-1071.
32. Ravi V, Lam K, Tay BH, Tay A, Brenner S, Venkatesh B. 2009. Elephant shark (Callorhinchus milii) provides insights into the evolution of Hox gene clusters in gnathostomes. Proc Natl Acad Sci USA. 106:16327-16332.
33. Rens W, O'Brien PC, Fairclough H, Harman L, Graves JA, Ferguson-Smith MA. 2003. Reversal and convergence in marsupial chromosome evolution. Cytogenet Genome Res. 102:282-290.
34. Ruan Y, Liu N, Priori SG. 2009. Sodium channel mutations and arrhythmias. Nat Rev Cardiol. 6:337-348.
35. Salkoff L, Butler A, Wei A, Scavarda N, Giffen K, Ifune C, Goodman R, Mandel G. 1987. Genomic organization and deduced amino acid sequence of a putative sodium channel gene in Drosophila. Science 237:744-749.
36. Sato C, Matsumoto G. 1992. Primary structure of squid sodium channel deduced from the complementary DNA sequence. Biochem Biophys Res Commun. 186:61-68.
37. Schmidt HA, Strimmer K, Vingron M, von Haeseler A. 2002. TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18:502-504.
38. Shimizu H, Watanabe E, Hiyama TY, Nagakura A, Fujikawa A, Okado H, Yanagawa Y, Obata K, Noda M. 2007. Glial Nax channels control lactate signaling to neurons for brain [Na\+] sensing. Neuron 54:59-72.
39. Spafford JD, Spencer AN, Gallin WJ. 1998. A putative voltage-gated sodium channel alpha subunit (PpSCN1) from the hydrozoan jellyfish, Polyorchis penicillatus: structural comparisons and evolutionary considerations. Biochem Biophys Res Commun. 244:772-780.
40. Spafford JD, Spencer AN, Gallin WJ. 1999. Genomic organization of a voltage-gated Na\+ channel in a hydrozoan jellyfish: insights into the evolution of voltage-gated Na\+ channel genes. Recep Channels. 6:493-506.
41. Sundström G, Larsson TA, Larhammar D. 2008. Phylogenetic and chromosomal analyses of multiple gene families syntenic with vertebrate Hox clusters. BMC Evol Biol. 8:254.
42. Svartman M, Vianna-Morgante AM. 1998. Karyotype evolution of marsupials: from higher to lower diploid numbers. Cytogenet Cell Genet. 82:263-266.
43. Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
44. Warmke JW, Reenan RA, Wang P, et al. (12 co-authors). 1997. Functional expression of Drosophila para sodium channels. Modulation by the membrane protein TipE and toxin pharmacology. J Gen Physiol. 110:119-133.
45. Waterhouse AM, Procter JB, Martin DM, Clamp M, Barton GJ. 2009. Jalview Version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics 25:1189-1191.
46. West JW, Patton DE, Scheuer T, Wang Y, Goldin AL, Catterall WA. 1992. A cluster of hydrophobic amino acid residues required for fast Na(\+)-channel inactivation. Proc Natl Acad Sci USA. 89:10910-10914.
47. Wu Q, Krainer AR. 1999. AT-AC pre-mRNA splicing mechanisms and conservation of minor introns in voltage-gated ion channel genes. Mol Cell Biol. 19:3225-3236.
48. Yu FH, Catterall WA. 2003. Overview of the voltage-gated sodium channel family. Genome Biol. 4:207.
49. Yu FH, Catterall WA. 2004. The VGL-chanome: a protein super-family specialized for electrical signaling and ionic homeostasis. Sci STKE. 2004:re15.
50. Yu FH, Yarov-Yarovoy V, Gutman GA, Catterall WA. 2005. Overview of molecular relationships in the voltage-gated ion channel superfamily. Pharmacol Rev. 57:387-395.
51. Zhou W, Chung I, Liu Z, Goldin AL, Dong K. 2004. A voltage-gated calcium-selective channel encoded by a sodium channel-like gene. Neuron 42:101-112.