-
1
-
-
0028864148
-
Comparison of a mitochondrial gene and a corresponding nuclear pseudogene
-
Arctander P. 1995. Comparison of a mitochondrial gene and a corresponding nuclear pseudogene. Proc R Soc Lond B Biol Sci. 262:13-19.
-
(1995)
Proc R Soc Lond B Biol Sci
, vol.262
, pp. 13-19
-
-
Arctander, P.1
-
2
-
-
32944456059
-
Inheritance and recombination of mitochondrial genomes in plants, fungi and animals
-
Barr CM, Neiman M, Taylor DR. 2005. Inheritance and recombination of mitochondrial genomes in plants, fungi and animals. New Phytol. 168:39-50.
-
(2005)
New Phytol
, vol.168
, pp. 39-50
-
-
Barr, C.M.1
Neiman, M.2
Taylor, D.R.3
-
4
-
-
0033999959
-
Frequent assimilation of mitochondrial DNA by grasshopper nuclear genomes
-
Bensasson D, Zhang DX, Hewitt GM. 2000. Frequent assimilation of mitochondrial DNA by grasshopper nuclear genomes. Mol Biol Evol. 17:406-415.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 406-415
-
-
Bensasson, D.1
Zhang, D.X.2
Hewitt, G.M.3
-
5
-
-
78650430873
-
The broken land: Adventures in Great Basin geology
-
Salt Lake City (UT): Utah Press. Farris JS. 1989. The retention index and the rescaled consistency index
-
DeCourten FL. 2003. The broken land: adventures in Great Basin geology. Salt Lake City (UT): Utah Press. Farris JS. 1989. The retention index and the rescaled consistency index. Cladistics 5:417-419.
-
(2003)
Cladistics
, vol.5
, pp. 417-419
-
-
Decourten, F.L.1
-
6
-
-
0348202611
-
Insecta: Microcoryphia and Thysanura
-
Dindal DL, editor New York John Wiley & Sons
-
Ferguson LM. 1990. Insecta: Microcoryphia and Thysanura. In: Dindal DL, editor. Soil biology guide. New York: John Wiley & Sons. p. 935-949.
-
(1990)
Soil Biology Guide
, pp. 935-949
-
-
Ferguson, L.M.1
-
8
-
-
0022413838
-
Mitochondrial DNA-like sequences in the human nuclear genome: Characterization and implications in the evolution of mitochondrial DNA
-
Fukuda M, Wakasugi S, Tsuzuki T, Nomiyama H, Shimada K, Miyata T. 1985. Mitochondrial DNA-like sequences in the human nuclear genome: characterization and implications in the evolution of mitochondrial DNA. J Mol Biol. 186:257-266.
-
(1985)
J Mol Biol
, vol.186
, pp. 257-266
-
-
Fukuda, M.1
Wakasugi, S.2
Tsuzuki, T.3
Nomiyama, H.4
Shimada, K.5
Miyata, T.6
-
9
-
-
0002051540
-
BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser. 41:95-98.
-
(1999)
Nucleic Acids Symp ser
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
10
-
-
70349895392
-
Mitochondrial insertions into primate nuclear genomes suggest the use of numts as a tool for phylogeny
-
Hazkani-Covo E. 2009. Mitochondrial insertions into primate nuclear genomes suggest the use of numts as a tool for phylogeny. Mol Biol Evol. 26:2175-2179.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 2175-2179
-
-
Hazkani-Covo, E.1
-
11
-
-
77649210966
-
Molecular poltergeists: Mitochondrial DNA copies (numts) in sequenced nuclear genomes
-
Hazkani-Covo E, Zeller RM, Martin W. 2010. Molecular poltergeists: mitochondrial DNA copies (numts) in sequenced nuclear genomes. PloS Genet. 6:e1000834.
-
(2010)
PloS Genet
, vol.6
-
-
Hazkani-Covo, E.1
Zeller, R.M.2
Martin, W.3
-
12
-
-
0035399772
-
How do mitochondrial genes get into the nucleus?
-
Henze K, Martin W. 2001. How do mitochondrial genes get into the nucleus? Trends Genet. 17:383-387.
-
(2001)
Trends Genet
, vol.17
, pp. 383-387
-
-
Henze, K.1
Martin, W.2
-
13
-
-
64049098891
-
Mitochondrial pseudogenes in the nuclear genome of Aedes aegypti mosquitoes: Implications for past and future population genetic studies
-
Hlaing T, Tun-Lin W, Somboon P, Socheat D, Setha T, Min S, Chang MS, Walton C. 2009. Mitochondrial pseudogenes in the nuclear genome of Aedes aegypti mosquitoes: implications for past and future population genetic studies. BMC Genet. 10:11.
-
(2009)
BMC Genet
, vol.10
, pp. 11
-
-
Hlaing, T.1
Tun-Lin, W.2
Somboon, P.3
Socheat, D.4
Setha, T.5
Min, S.6
Chang, M.S.7
Walton, C.8
-
14
-
-
0037331484
-
Dramatically elevated rate of mitochondrial substitution in lice (Insecta: Phthiraptera)
-
Johnson KP, Cruickshank RH, Adams RJ, Smith VS, Page RDM, Clayton DH. 2003. Dramatically elevated rate of mitochondrial substitution in lice (Insecta: Phthiraptera). Mol Phylogenet Evol. 26:231-242.
-
(2003)
Mol Phylogenet Evol
, vol.26
, pp. 231-242
-
-
Kp, J.1
Cruickshank, R.H.2
Adams, R.J.3
Smith, V.S.4
Rdm, P.5
Clayton, D.H.6
-
15
-
-
33847289660
-
Transition-transversion bias is not universal: A counter example from grasshopper pseudogenes
-
Keller I, Bensasson D, Nichols RA. 2007. Transition-transversion bias is not universal: a counter example from grasshopper pseudogenes. PLoS Genet. 3:e22.
-
(2007)
PLoS Genet
, vol.3
-
-
Keller, I.1
Bensasson, D.2
Nichols, R.A.3
-
16
-
-
84963036271
-
Quantitative phyletics and the evolution of anurans
-
Kluge AG, Farris JS. 1969. Quantitative phyletics and the evolution of anurans. Syst Zool. 18:1-32.
-
(1969)
Syst Zool
, vol.18
, pp. 1-32
-
-
Kluge, A.G.1
Farris, J.S.2
-
17
-
-
44649184070
-
A mixed branch length model of heterotachy improves phylogenetic accuracy
-
Kolaczkowski B, Thornton JW. 2008. A mixed branch length model of heterotachy improves phylogenetic accuracy. Mol Biol Evol. 25:1054-1066.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1054-1066
-
-
Kolaczkowski, B.1
Thornton, J.W.2
-
18
-
-
0019726330
-
Pseudogenes as a paradigm of neutral evolution
-
Li WH, Gojobori T, Nei M. 1981. Pseudogenes as a paradigm of neutral evolution. Nature 292:237-239.
-
(1981)
Nature
, vol.292
, pp. 237-239
-
-
Li, W.H.1
Gojobori, T.2
Nei, M.3
-
19
-
-
65649117685
-
DnaSP v5: A software for comprehensive analysis of DNA polymorphism data
-
Librado P, Rozas J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451-1452.
-
(2009)
Bioinformatics
, vol.25
, pp. 1451-1452
-
-
Librado, P.1
Rozas, J.2
-
20
-
-
1442340284
-
How do insect nuclear and mitochondrial gene substitution patterns differ? Insights from Bayesian analyses of combined datasets
-
Lin CP, Danforth BN. 2004. How do insect nuclear and mitochondrial gene substitution patterns differ? Insights from Bayesian analyses of combined datasets. Mol Phylogenet Evol. 30:686-702.
-
(2004)
Mol Phylogenet Evol
, vol.30
, pp. 686-702
-
-
Lin, C.P.1
Danforth, B.N.2
-
21
-
-
0028363062
-
Numt, a recent transfer and tandem amplification of mitochondrial DNA to the nuclear genome of the domestic cat
-
Lopez JV, Yuhki N, Masuda R, Modi W, O'Brien SJ. 1994. Numt, a recent transfer and tandem amplification of mitochondrial DNA to the nuclear genome of the domestic cat. J Mol Evol. 39:174-190.
-
(1994)
J Mol Evol
, vol.39
, pp. 174-190
-
-
Lopez, J.V.1
Yuhki, N.2
Masuda, R.3
Modi, W.4
O'Brien, S.J.5
-
22
-
-
13444251528
-
RDP2: Recombination detection and analysis from sequence alignments
-
Martin DP, Williamson C, Posada D. 2005. RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 21:260-262.
-
(2005)
Bioinformatics
, vol.21
, pp. 260-262
-
-
Martin, D.P.1
Williamson, C.2
Posada, D.3
-
23
-
-
0005866532
-
An annotated list of generic and specific names of Machilidae (Microcoryphia: Insecta) with identification keys for the genera and geographical notes
-
Mendes LF. 1990. An annotated list of generic and specific names of Machilidae (Microcoryphia: Insecta) with identification keys for the genera and geographical notes. Est Ens e Doc. 155:1-126.
-
(1990)
Est Ens e Doc
, vol.155
, pp. 1-126
-
-
Mendes, L.F.1
-
24
-
-
70349668982
-
Molecular decay of the tooth gene enamelin (ENAM) mirrors the loss of enamel in the fossil record of placental mammals
-
Meredith RW, Gatesy J, Murphy WJ, Ryder OA, Springer MS. 2009. Molecular decay of the tooth gene enamelin (ENAM) mirrors the loss of enamel in the fossil record of placental mammals. PLoS Genet. 5:e1000634.
-
(2009)
PLoS Genet
, vol.5
-
-
Meredith, R.W.1
Gatesy, J.2
Murphy, W.J.3
Ryder, O.A.4
Springer, M.S.5
-
25
-
-
0030079599
-
Mitochondrial DNA: Molecular fossils in the nucleus
-
Perna NT, Kocher TD. 1996. Mitochondrial DNA: molecular fossils in the nucleus. Curr Biol. 6:128-129.
-
(1996)
Curr Biol
, vol.6
, pp. 128-129
-
-
Perna, N.T.1
Kocher, T.D.2
-
26
-
-
33847663742
-
Unusual origin of a nuclear pseudogene in the Italian wall lizard: Intergenomic and interspecific transfer of a large section of the mitochondrial genome in the genus Podarcis (Lacertidae)
-
Podnar M, Haring E, Pinsker W, Mayer W. 2007. Unusual origin of a nuclear pseudogene in the Italian wall lizard: intergenomic and interspecific transfer of a large section of the mitochondrial genome in the genus Podarcis (Lacertidae). J Mol Evol. 64:308-320.
-
(2007)
J Mol Evol
, vol.64
, pp. 308-320
-
-
Podnar, M.1
Haring, E.2
Pinsker, W.3
Mayer, W.4
-
27
-
-
0026906691
-
The genetic legacy of Mother Goose: Phylogeo-graphic patterns of lesser snow goose Chen caerulescens caerulescens maternal lineages
-
Quinn TW. 1992. The genetic legacy of Mother Goose: phylogeo-graphic patterns of lesser snow goose Chen caerulescens caerulescens maternal lineages. Mol Ecol. 1:105-117.
-
(1992)
Mol Ecol
, vol.1
, pp. 105-117
-
-
Quinn, T.W.1
-
28
-
-
2442637641
-
NUMTs in sequenced eukaryotic genomes
-
Richly E, Leister D. 2004. NUMTs in sequenced eukaryotic genomes. Mol Biol Evol. 21:1081-1084.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 1081-1084
-
-
Richly, E.1
Leister, D.2
-
29
-
-
34548361488
-
Cytochrome b pseudogene originated from a highly divergent mitochondrial lineage in genus Rupicapra
-
Rodŕguez F, Albornoz J, Doḿnguez A. 2007. Cytochrome b pseudogene originated from a highly divergent mitochondrial lineage in genus Rupicapra. J Hered. 98:243-249.
-
(2007)
J Hered
, vol.98
, pp. 243-249
-
-
Rodŕguez, F.1
Albornoz, J.2
Doḿnguez, A.3
-
30
-
-
50249101192
-
Potential gene flow in natural populations of the Drosophila ananassae species cluster inferred from a nuclear mitochondrial pseudogene
-
Sawamura K, Koganebuchi K, Sato H, Kamiya K, Matsuda M, Oguma Y. 2008. Potential gene flow in natural populations of the Drosophila ananassae species cluster inferred from a nuclear mitochondrial pseudogene. Mol Phylogenet Evol. 48:1087-1093.
-
(2008)
Mol Phylogenet Evol
, vol.48
, pp. 1087-1093
-
-
Sawamura, K.1
Koganebuchi, K.2
Sato, H.3
Kamiya, K.4
Matsuda, M.5
Oguma, Y.6
-
31
-
-
23944453340
-
Forty million years of independent evolution: A mitochondrial gene and its corresponding nuclear pseudogene in primates
-
Schmitz J, Piskurek O, Zischler H. 2005. Forty million years of independent evolution: a mitochondrial gene and its corresponding nuclear pseudogene in primates. J Mol Evol. 61:1-11.
-
(2005)
J Mol Evol
, vol.61
, pp. 1-11
-
-
Schmitz, J.1
Piskurek, O.2
Zischler, H.3
-
32
-
-
51649110939
-
Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified
-
Song H, Buhay JE, Whiting MF, Crandall KA. 2008. Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified. Proc Natl Acad Sci USA. 105:13486-13491.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 13486-13491
-
-
Song, H.1
Buhay, J.E.2
Whiting, M.F.3
Crandall, K.A.4
-
33
-
-
78650439245
-
Three genera of Machilidae from North America and Mexico: Leptomachilis, Meximachilis and Mesomachilis, with description of two new sense organs in Mesomachilis males (Insecta, Archaeognatha)
-
Sturm H. 1991. Three genera of Machilidae from North America and Mexico: Leptomachilis, Meximachilis and Mesomachilis, with description of two new sense organs in Mesomachilis males (Insecta, Archaeognatha). Steenstrupia 17:53-78.
-
(1991)
Steenstrupia
, vol.17
, pp. 53-78
-
-
Sturm, H.1
-
34
-
-
0030022330
-
Numerous transposed sequences of mitochondrial cytochrome oxidase I-II in aphids of the genus Sitobion (Hemiptera: Aphididae)
-
Sunnucks P, Hales D. 1996. Numerous transposed sequences of mitochondrial cytochrome oxidase I-II in aphids of the genus Sitobion (Hemiptera: Aphididae). Mol Biol Evol. 13:510-524.
-
(1996)
Mol Biol Evol
, vol.13
, pp. 510-524
-
-
Sunnucks, P.1
Hales, D.2
-
36
-
-
0031574072
-
The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
37
-
-
56549131066
-
Revealing the hidden complexities of mtDNA inheritance
-
White DJ, Wolff JN, Pierson M, Gemmell NJ. 2008. Revealing the hidden complexities of mtDNA inheritance. Mol Ecol. 17: 4925-4942.
-
(2008)
Mol Ecol
, vol.17
, pp. 4925-4942
-
-
White, D.J.1
Wolff, J.N.2
Pierson, M.3
Gemmell, N.J.4
-
38
-
-
0034907535
-
Mitochondrial pseudogenes are pervasive and often insidious in the snapping shrimp genus Alpheus
-
Williams ST, Knowlton N. 2001. Mitochondrial pseudogenes are pervasive and often insidious in the snapping shrimp genus Alpheus. Mol Biol Evol. 18:1484-1493.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 1484-1493
-
-
Williams, S.T.1
Knowlton, N.2
-
39
-
-
0036073133
-
Pattern of organization of human mitochondrial pseudogenes in the nuclear genome
-
Woischnik M, Moraes CT. 2002. Pattern of organization of human mitochondrial pseudogenes in the nuclear genome. Genome Res. 12:885-893.
-
(2002)
Genome Res
, vol.12
, pp. 885-893
-
-
Woischnik, M.1
Moraes, C.T.2
-
40
-
-
34547803197
-
PAML 4: A program package for phylogenetic analysis by maximum likelihood
-
Yang Z. 2007. PAML 4: a program package for phylogenetic analysis by maximum likelihood. Mol Biol Evol. 24:1586-1591.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
41
-
-
0000387373
-
Nuclear integrations: Challenges for mitochondrial DNA markers
-
Zhang DX, Hewitt GM. 1996. Nuclear integrations: challenges for mitochondrial DNA markers. Trends Ecol Evol. 11: 247-251.
-
(1996)
Trends Ecol Evol
, vol.11
, pp. 247-251
-
-
Zhang, D.X.1
Hewitt, G.M.2
|