Identification of new galactose oxidase genes in Fusarium spp

Journal of Basic Microbiology

Volumn 50, Issue 6, 2010, Pages 527-537

  Aparecido Cordeiro, Fabio ^a   Bertechini Faria, Carla ^a   Parra Barbosa Tessmann, Ione ^a  

^a STATE UNIVERSITY OF MARINGÁ   (Brazil)

Author keywords

Fusarium subglutinans; Fusarium verticillioides; Galactose oxidase; Gene cloning; Gene lineages; Gibberella fujikuroi

Indexed keywords

FUNGAL DNA; GALACTOSE OXIDASE;

AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; CLUSTER ANALYSIS; DNA SEQUENCE; ENZYMOLOGY; FUNGAL GENE; FUSARIUM; GENE EXPRESSION PROFILING; GENETICS; MOLECULAR CLONING; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; CLONING, MOLECULAR; CLUSTER ANALYSIS; DNA, FUNGAL; FUSARIUM; GALACTOSE OXIDASE; GENE EXPRESSION PROFILING; GENES, FUNGAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID;

FUSARIUM; FUSARIUM AUSTROAMERICANUM; FUSARIUM SUBGLUTINANS; GIBBERELLA ACUMINATA; GIBBERELLA FUJIKUROI; GIBBERELLA FUJIKUROI COMPLEX; GIBBERELLA MONILIFORMIS; GIBBERELLA ZEAE;

EID: 78650385234     PISSN: 0233111X     EISSN: 15214028     Source Type: Journal    
DOI: 10.1002/jobm.201000078     Document Type: Article

References (53)

1. Cooper, J.A.D., Smith, W., Bacila, M., Medina, H., 1958. Galactose oxidase from Polyporus circinatus Fr. J. Biol. Chem., 234, 445-448.
2. Nobles, M.K., Madhosingh, C., 1963. Dactylium dendroides (Bull.) Fr. misnamed as Polyporus circinatus Fr. Biochem. Biophys. Res. Commun., 12, 146-147.
3. Ögel, Z.B., Brayford, D., McPherson, M.J., 1994. Cellulose-triggered sporulation in the galactose oxidase-producing fungus Cladobotryum (Dactylium) dendroides NRRL 2903 and its re-identification as a species of Fusarium. Mycol. Res., 98, 474-480.
4. Niessen, M.L., Vogel, R.F., 1997. Specific identification of Fusarium graminearum by PCR with gaoA targeted primers. System. Appl. Microbiol., 20, 111-113.
5. O'Donnell, K., Kistler, H.C., Tacke, B.K., Casper, H.H., 2000. Gene genealogies reveal global phylogeographic structure and reproductive isolation among lineages of Fusarium graminearum, the fungus causing wheat scab. Proc. Natl. Acad. Sci. USA, 97, 7905-7910.
6. O'Donnell, K., Ward, T.J., Geiser, D.M., Kistler, H.C., Aoki, T., 2004. Genealogical concordance between the mating type locus and seven other nuclear genes supports formal recognition of nine phylogenetically distinct species within the Fusarium graminearum clade. Fungal Genet. Biol., 41, 600-623.
7. Aisaka, K., Uwajima, T., Terada, O., 1984. Kinetic properties of galactose oxidase from Gibberella fujikuroi. Agric. Biol. Chem., 48, 1425-1431.
8. Barbosa-Tessmann, I.P., da Silva, D.A., Peralta, R.M., Kemmelmeier, C., 2001. A new species of Fusarium producer of galactose oxidase. J. Basic Microbiol., 41, 143-148.
9. Whittaker, J.W., 2005. The radical chemistry of galactose oxidase. Arch. Biochem. Biophys., 433, 227-239.
10. Shleev, S., Tkac, J., Christenson, A., Ruzgas, T. et al., 2005. Direct electron transfer between copper-containing proteins and electrodes. Biosens. Bioelectron., 20, 2517-2554.
11. Siebum, A., van Wijk, A.V., Schoevaart, R., Kieboom, T., 2006. Galactose oxidase and alcohol oxidase: scope and limitations for the enzymatic synthesis of aldehydes. J. Mol. Catal. B-Enzym., 41, 141-145.
12. Schulte, B.A., Spicer, S.S., 1983. Light microscopic histochemical detection of sugar residues in secretory glycoproteins of rodent and human tracheal glands with lectin-horseradish peroxidase conjugates and the galactose oxidase-Schif sequence. J. Histochem. Cytochem., 31, 391-403.
13. Fortelius, M., Mattjus, P., 2006. Galactose oxidase action on galactose containing glycolipids - a fluorescent method. Chem. Phys. Lipids, 142, 103-110.
14. Shamsuddin, A.M., 1996. A simple test for cancer screening. Anticancer Res., 16, 2193-2200.
15. Vucenik, I., Gotovac, J., Druzijanic, N., Shamsuddin, A.M., 2001. Usefullness of galactose oxidase-Schiff test in rectal mucus for screening of colorectal malignancy. Anticancer Res., 21, 1247-1256.
16. Chagpar, A., Evelegh, M., Fritsche Jr., H.A., Krishnamurthy, S. et al., 2004. Prospective evaluation of a novel approach for the use of a quantitative galactose oxidase-Schiff reaction in ductal fluid samples from women with breast carcinoma. Cancer, 100, 2549-2554.
17. McPherson, M.J., Ögel, Z.B., Stevens, C., Yadav, K.D.S. et al., 1992. Galactose oxidase of Dactylium dendroides. Gene cloning and sequence analysis. J. Biol. Chem., 267, 8146-8152.
18. Whittaker, M.M., Whittaker, J.W., 2000. Expression of recombinant galactose oxidase by Pichia pastoris. Protein Expr. Purif., 20, 105-111.
19. Xu, F., Golightly, E.J., Schneider, P., Berka, R.M. et al., 2000. Expression and characterization of a recombinant Fusarium spp. galactose oxidase. Appl. Biochem. Biotechnol., 88, 23-32.
20. Sun, L., Petrounia, I.P., Yagasaki, M., Bandara, G., Arnold, F.H., 2001. Expression and stabilization of galactose oxidase in Escherichia coli by directed evolution. Protein Eng., 14, 699-704.
21. Escalettes, F., Turner, N.J., 2008. Directed evolution of galactose oxidase: generation of enantioselective secondary alcohol oxidases. ChemBioChem., 9, 857-860.
22. Golightly, E., Berka, R.M., Rey, M.W., 2001. Polypeptides having galactose oxidase activity and nucleic acids encoding same. US Pat 6, 277, 612.
23. Silakowski, B., Ehret, H., Schairer, H.U., 1998. fbfB, a gene encoding a putative galactose oxidase, is involved in Stigmatella aurantiaca fruiting body formation. J. Bacteriol., 180, 1241-1247.
24. Mazur, A.W., 1991. Galactose oxidase. Selected properties and synthetic applications. ACS Symp. Ser., 466, 99-110.
25. Tressel, P.S., Kosman, D.J., 1982. Galactose oxidase from Dactylium dendroides. Meth. Enzymol., 89, 163-171.
26. Leslie, J.F., Summerell, B.A., 2006. The Fusarium Laboratory Manual. Blackwell Publishing, Oxford, U.K.
27. Tamura, K., Dudley, J., Nei, M., Kumar, S., 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol., 24, 1596-1599.
28. Hall, T.A., 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser., 41, 95-98.
29. Markus, Z., Miller, G., Avigad, G., 1965. Effect of culture conditions on the production of galactose-oxidase by Dactylium dendroides. Appl. Microbiol., 13, 686-693.
30. Alberton, D., de Oliveira, L.S., Peralta, R.M., Barbosa-Tessmann, I.P., 2007. Production, purification, and characterization of a novel galactose oxidase from Fusarium acuminatum. J. Basic Microbiol., 47, 203-212.
31. Koenig, R.L., Ploetz, R.C., Kistler, H.C., 1997. Fusarium oxysporum f.sp. cubense consists of a small number of divergent and globally distributed clonal lineages. Phytopathol., 87, 915-923.
32. Mulé, G., Susca, A., Stea, G., Moretti, A., 2004. A species-specific assay based on the calmodulin partial gene for identification of Fusarium verticillioides, F. proliferatum and F. subglutinans. Europ. J. Plant. Pathol., 110, 495-502.
33. Saitou, N., Nei, M., 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425.
34. Felsenstein, J., 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution, 39, 783-791.
35. Tamura, K., Nei, M., Kumar, S. 2004. Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc. Nat. Acad. Sci. USA, 101, 11030-11035.
36. Arnold, K., Bordoli, L., Kopp, J., Schwede T., 2006. The SWISS-MODEL Workspace: A web-based environment for protein structure homology modelling. Bioinformatics, 22, 195-201.
37. Kiefer, F., Arnold, K., Künzli, M., Bordoli, L., Schwede, T., 2009. The SWISS-MODEL Repository and associated resources. Nucleic Acids Res., 37, D387-D392.
38. Ma, L.J., van der Does, H. C., Borkovich, K. A., Coleman, J. J. et al., 2010. Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature, 464, 367-73.
39. Koonin, E.V., 2005. Orthologs, paralogs, and evolutionary genomics. Annu. Rev. Genet., 39, 309-338.
40. Kuzniar, A., van Ham, R.C.H.J., Pongor, S., Leunissen, J.A.M., 2008. The quest for orthologs: finding the corresponding gene across genomes. Trends Genet., 24, 539-551.
41. Guindon, S., Gascuel, O., 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol., 52, 696-704.
42. Grossetête, S., Labedan, B., Lespinet, O., 2010. FUNGIpath: a tool to assess fungal metabolic pathways predicted by orthology. BMC Genomics, 11, 81-95.
43. Garred, P., Honoré, C., Ma, Y.J., Rørvig, S. et al., 2010. The genetics of ficolins. J. Innate Immun., 2, 3-16.
44. Chang, T.-C., Liu, W.-S., 2010. The molecular evolution of PL10 homologs. BMC Evol. Biol., 10, 127-138.
45. Andersson, J.O., 2009. Gene transfer and diversification of microbial eukaryotes. Annu. Rev. Microbiol., 63, 177-193.
46. Rosewich U.L., Kistler H.C., 2000. Role of horizontal gene transfer in the evolution of fungi. Annu. Rev. Phytopathol., 38, 325-363.
47. Whitaker, J.W., McConkey, G.A., Westhead, D.R., 2009. Prediction of horizontal gene transfers in eukaryotes: approaches and challenges. Biochem. Soc. Trans., 37, 792-795.
48. Katz L.A., 2002. Lateral gene transfers and the evolution of eukaryotes: theories and data. Int. J. Syst. Evol. Micr., 52, 1893-1900.
49. Ito, N., Phillips, S.E.V., Stevens, C., Ogel, Z.B. et al., 1991. Novel thioether bond revealed by 1.7 Å crystal structure of galactose oxidase. Nature, 350, 87-90.
50. Lee, Y.-K., Whittaker, M.M., Whittaker, J.W., 2008. The electronic structure of the Cys-Tyr• free radical in galactose oxidase determined by EPR spectroscopy. Biochemistry, 47, 6637-6649.
51. Rogers, M.S., Tyler, E.M., Akyumani, N., Kurtis, C.R. et al. 2007. The stacking tryptophan of galactose oxidase; a second-coordination sphere residue that has profound effects on tyrosyl radical behavior and enzyme catalysis. Biochemistry, 46, 4606-4618.
52. Firbank, S.J., Rogers, M., Hurtado-Guerrero, R., Dooley, D.M. et al., 2003. Cofactor processing in galactose oxidase. Biochem. Soc. Trans., 31, 506-509.
53. Brown, D.W., Cheung, F., Proctor, R.H., Butchko, R.A.E. et al., 2005. Comparative analysis of 87, 000 expressed sequence tags from the fumonisin-producing fungus Fusarium verticillioides. Fungal Genet. Biol., 42, 848-861.