-
1
-
-
0023607047
-
Testis-specific transcripts detected by a human Y-DNA-derived probe
-
3503717
-
Testis-specific transcripts detected by a human Y-DNA-derived probe. P Leroy E Seboun MG Mattei M Fellous CE Bishop, Development 1987 101 Suppl 177 183 3503717
-
(1987)
Development
, vol.101
, Issue.SUPPL
, pp. 177-183
-
-
Leroy, P.1
Seboun, E.2
Mattei, M.G.3
Fellous, M.4
Bishop, C.E.5
-
2
-
-
35449007714
-
The DDX3 subfamily of the DEAD box helicases: Divergent roles as unveiled by studying different organisms and in vitro assays
-
10.2174/092986707782023677. 17979704
-
The DDX3 subfamily of the DEAD box helicases: divergent roles as unveiled by studying different organisms and in vitro assays. A Rosner B Rinkevich, Curr Med Chem 2007 14 2517 25 10.2174/092986707782023677 17979704
-
(2007)
Curr Med Chem
, vol.14
, pp. 2517-25
-
-
Rosner, A.1
Rinkevich, B.2
-
3
-
-
33749466728
-
Structural characterization and expression studies of Dby and its homologs in the mouse
-
10.2164/jandrol.106.000471. 16728723
-
Structural characterization and expression studies of Dby and its homologs in the mouse. QP Vong Y Li YC Lau, et al. J Androl 2006 27 653 61 10.2164/jandrol.106.000471 16728723
-
(2006)
J Androl
, vol.27
, pp. 653-61
-
-
Vong, Q.P.1
Li, Y.2
Lau, Y.C.3
-
4
-
-
77953124623
-
-
UniProt. http://www.uniprot.org/
-
UniProt
-
-
-
5
-
-
33749139723
-
Dead-box proteins: A family affair - Active and passive players in RNP-remodeling
-
10.1093/nar/gkl468. 16936318
-
Dead-box proteins: a family affair - active and passive players in RNP-remodeling. P Linder, Nucleic Acids Res 2006 34 4168 80 10.1093/nar/gkl468 16936318
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 4168-80
-
-
Linder, P.1
-
6
-
-
49149114140
-
The DEAD-box helicase DDX3X is a critical component of the TANK-binding kinase 1-dependent innate immune response
-
10.1038/emboj.2008.126. 18583960
-
The DEAD-box helicase DDX3X is a critical component of the TANK-binding kinase 1-dependent innate immune response. D Soulat T Bürckstümmer S Westermayer, et al. EMBO J 2008 27 2135 2146 10.1038/emboj.2008.126 18583960
-
(2008)
EMBO J
, vol.27
, pp. 2135-2146
-
-
Soulat, D.1
Bürckstümmer, T.2
Westermayer, S.3
-
7
-
-
46249116653
-
Oncogenic role of DDX3 in breast cancer biogenesis
-
10.1038/onc.2008.33. 18264132
-
Oncogenic role of DDX3 in breast cancer biogenesis. M Botlagunta F Vesuna Y Mironchik, et al. Oncogene 2008 27 3912 3922 10.1038/onc.2008.33 18264132
-
(2008)
Oncogene
, vol.27
, pp. 3912-3922
-
-
Botlagunta, M.1
Vesuna, F.2
Mironchik, Y.3
-
8
-
-
33646894507
-
Divergent roles of the DEAD-box protein BS-PL10, the urochordate homologue of human DDX3 and DDX3Y proteins, in colony astogeny and ontogeny
-
10.1002/dvdy.20728. 16518819
-
Divergent roles of the DEAD-box protein BS-PL10, the urochordate homologue of human DDX3 and DDX3Y proteins, in colony astogeny and ontogeny. A Rosner G Paz B Rinkevich, Dev Dyn 2006 235 1508 1521 10.1002/dvdy.20728 16518819
-
(2006)
Dev Dyn
, vol.235
, pp. 1508-1521
-
-
Rosner, A.1
Paz, G.2
Rinkevich, B.3
-
9
-
-
27644446534
-
Viral and cellular RNA helicases as antiviral targets
-
10.1038/nrd1853. 16184083
-
Viral and cellular RNA helicases as antiviral targets. AD Kwong BG Rao K Jeang, Nat Rev Drug Discov 2005 4 845 853 10.1038/nrd1853 16184083
-
(2005)
Nat Rev Drug Discov
, vol.4
, pp. 845-853
-
-
Kwong, A.D.1
Rao, B.G.2
Jeang, K.3
-
10
-
-
0742306935
-
Transcriptional levels of four y chromosome-linked AZF genes in azoospermic men and their association with successful sperm retrieval
-
discussion 136. 10.1016/j.urology.2003.08.048. 14751364
-
Transcriptional levels of four Y chromosome-linked AZF genes in azoospermic men and their association with successful sperm retrieval. P Kuo Y Lin Y Teng, et al. Urology 2004 63 131 6 discussion 136. 10.1016/j.urology.2003. 08.048 14751364
-
(2004)
Urology
, vol.63
, pp. 131-6
-
-
Kuo, P.1
Lin, Y.2
Teng, Y.3
-
11
-
-
0034889045
-
Prognostic value of y deletion analysis. the role of current methods
-
10.1093/humrep/16.8.1543. 11473940
-
Prognostic value of Y deletion analysis. The role of current methods. C Foresta E Moro A Ferlin, Hum Reprod 2001 16 1543 7 10.1093/humrep/16.8.1543 11473940
-
(2001)
Hum Reprod
, vol.16
, pp. 1543-7
-
-
Foresta, C.1
Moro, E.2
Ferlin, A.3
-
12
-
-
35148849627
-
Quantification of DDX3Y, RBMY1, DAZ and TSPY mRNAs in testes of patients with severe impairment of spermatogenesis
-
10.1093/molehr/gam057. 17881721
-
Quantification of DDX3Y, RBMY1, DAZ and TSPY mRNAs in testes of patients with severe impairment of spermatogenesis. MC Lardone DA Parodi R Valdevenito, et al. Mol Hum Reprod 2007 13 705 712 10.1093/molehr/gam057 17881721
-
(2007)
Mol Hum Reprod
, vol.13
, pp. 705-712
-
-
Lardone, M.C.1
Parodi, D.A.2
Valdevenito, R.3
-
13
-
-
7344222765
-
The mouse y chromosome interval necessary for spermatogonial proliferation is gene dense with syntenic homology to the human AZFa region
-
10.1093/hmg/7.11.1713. 9736773
-
The mouse Y chromosome interval necessary for spermatogonial proliferation is gene dense with syntenic homology to the human AZFa region. S Mazeyrat N Saut CA Sargent, et al. Hum Mol Genet 1998 7 1713 24 10.1093/hmg/7.11.1713 9736773
-
(1998)
Hum Mol Genet
, vol.7
, pp. 1713-24
-
-
Mazeyrat, S.1
Saut, N.2
Sargent, C.A.3
-
14
-
-
75749143897
-
Molecular characterization of the DDX3Y gene and its homologs in cattle
-
Molecular characterization of the DDX3Y gene and its homologs in cattle. W Liu A Wang Y Yang, et al. Cytogenet and Genome Res 2009
-
(2009)
Cytogenet and Genome Res
-
-
Liu, W.1
Wang, A.2
Yang, Y.3
-
15
-
-
68249102048
-
Evolution and survival on eutherian sex chromosomes
-
10.1371/journal.pgen.1000568. 19609352
-
Evolution and survival on eutherian sex chromosomes. MA Wilson KD Makova, PLoS Genet 2009 5 1000568 10.1371/journal.pgen.1000568 19609352
-
(2009)
PLoS Genet
, vol.5
, pp. 51000568
-
-
Wilson, M.A.1
Makova, K.D.2
-
16
-
-
77953125929
-
-
NCBI. http://www.ncbi.nlm.nih.gov/
-
NCBI
-
-
-
18
-
-
0031586003
-
Prediction of complete gene structures in human genomic DNA
-
10.1006/jmbi.1997.0951. 9149143
-
Prediction of complete gene structures in human genomic DNA. C Burge S Karlin, J Mol Biol 1997 268 78 94 10.1006/jmbi.1997.0951 9149143
-
(1997)
J Mol Biol
, vol.268
, pp. 78-94
-
-
Burge, C.1
Karlin, S.2
-
20
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
10.1093/molbev/msm088. 17483113
-
PAML 4: phylogenetic analysis by maximum likelihood. Z Yang, Mol Biol Evol 2007 24 1586 1591 10.1093/molbev/msm088 17483113
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
21
-
-
23144448512
-
ConSurf 2005: The projection of evolutionary conservation scores of residues on protein structures
-
10.1093/nar/gki370. 15980475
-
ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures. M Landau I Mayrose Y Rosenberg, et al. Nucleic Acids Res 2005 33 299 302 10.1093/nar/gki370 15980475
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 23299-302
-
-
Landau, M.1
Mayrose, I.2
Rosenberg, Y.3
-
23
-
-
33750936725
-
A dynamic view of sex chromosome evolution
-
10.1016/j.gde.2006.10.007. 17055249
-
A dynamic view of sex chromosome evolution. D Bachtrog, Curr Opin Genet Dev 2006 16 578 85 10.1016/j.gde.2006.10.007 17055249
-
(2006)
Curr Opin Genet Dev
, vol.16
, pp. 578-85
-
-
Bachtrog, D.1
-
24
-
-
33644761962
-
Sex chromosome specialization and degeneration in mammals
-
10.1016/j.cell.2006.02.024. 16530039
-
Sex chromosome specialization and degeneration in mammals. JAM Graves, Cell 2006 124 901 14 10.1016/j.cell.2006.02.024 16530039
-
(2006)
Cell
, vol.124
, pp. 901-14
-
-
Graves, J.A.M.1
-
25
-
-
53849094422
-
Sex determination in mammals - Before and after the evolution of SRY
-
10.1007/s00018-008-8109-z. 18581056
-
Sex determination in mammals - before and after the evolution of SRY. MC Wallis PD Waters JAM Graves, Cell Mol Life Sci 2008 65 3182 3195 10.1007/s00018-008-8109-z 18581056
-
(2008)
Cell Mol Life Sci
, vol.65
, pp. 3182-3195
-
-
Wallis, M.C.1
Waters, P.D.2
Graves, J.A.M.3
-
26
-
-
0033846248
-
Human y chromosome, sex determination, and spermatogenesis- a feminist view
-
10.1095/biolreprod63.3.667. 10952906
-
Human Y chromosome, sex determination, and spermatogenesis- a feminist view. JA Marshall Graves, Biol Reprod 2000 63 667 676 10.1095/biolreprod63.3.667 10952906
-
(2000)
Biol Reprod
, vol.63
, pp. 667-676
-
-
Marshall Graves, J.A.1
-
27
-
-
1642475221
-
Extensive gene traffic on the mammalian X chromosome
-
10.1126/science.1090042. 14739461
-
Extensive gene traffic on the mammalian X chromosome. JJ Emerson H Kaessmann E Betrn M Long, Science 2004 303 537 540 10.1126/science.1090042 14739461
-
(2004)
Science
, vol.303
, pp. 537-540
-
-
Emerson, J.J.1
Kaessmann, H.2
Betrn, E.3
Long, M.4
-
28
-
-
0036906987
-
Retroposed New Genes out of the X in Drosophila
-
10.1101/gr.6049. 12466289
-
Retroposed New Genes Out of the X in Drosophila. E Betrn K Thornton M Long, Genome Research 2002 12 1854 1859 10.1101/gr.6049 12466289
-
(2002)
Genome Research
, vol.12
, pp. 1854-1859
-
-
Betrn, E.1
Thornton, K.2
Long, M.3
-
29
-
-
0036097187
-
Evolution of the Phosphoglycerate mutase Processed Gene in Human and Chimpanzee Revealing the Origin of a New Primate Gene
-
11961099
-
Evolution of the Phosphoglycerate mutase Processed Gene in Human and Chimpanzee Revealing the Origin of a New Primate Gene. E Betran W Wang L Jin M Long, Mol Biol Evol 2002 19 654 663 11961099
-
(2002)
Mol Biol Evol
, vol.19
, pp. 654-663
-
-
Betran, E.1
Wang, W.2
Jin, L.3
Long, M.4
-
30
-
-
0032865868
-
RNAs from all categories generate retrosequences that may be exapted as novel genes or regulatory elements
-
10.1016/S0378-1119(99)00227-9. 10570990
-
RNAs from all categories generate retrosequences that may be exapted as novel genes or regulatory elements. J Brosius, Gene 1999 238 115 134 10.1016/S0378-1119(99)00227-9 10570990
-
(1999)
Gene
, vol.238
, pp. 115-134
-
-
Brosius, J.1
-
31
-
-
33751381461
-
TimeTree: A public knowledge-base of divergence times among organisms
-
10.1093/bioinformatics/btl505. 17021158
-
TimeTree: a public knowledge-base of divergence times among organisms. SB Hedges J Dudley S Kumar, Bioinformatics 2006 22 2971 2972 10.1093/ bioinformatics/btl505 17021158
-
(2006)
Bioinformatics
, vol.22
, pp. 2971-2972
-
-
Hedges, S.B.1
Dudley, J.2
Kumar, S.3
-
32
-
-
0033568856
-
Neuronal expression of neural nitric oxide synthase (nNOS) protein is suppressed by an antisense RNA transcribed from an NOS pseudogene
-
10479675
-
Neuronal expression of neural nitric oxide synthase (nNOS) protein is suppressed by an antisense RNA transcribed from an NOS pseudogene. SA Korneev JH Park M O'Shea, J Neurosci 1999 19 7711 7720 10479675
-
(1999)
J Neurosci
, vol.19
, pp. 7711-7720
-
-
Korneev, S.A.1
Park, J.H.2
O'Shea, M.3
-
33
-
-
0346155809
-
Pseudogenes: Are they "junk" or functional DNA?
-
10.1146/annurev.genet.37.040103.103949. 14616058
-
Pseudogenes: are they "junk" or functional DNA? ES Balakirev FJ Ayala, Annu Rev Genet 2003 37 123 51 10.1146/annurev.genet.37.040103.103949 14616058
-
(2003)
Annu Rev Genet
, vol.37
, pp. 123-51
-
-
Balakirev, E.S.1
Ayala, F.J.2
-
34
-
-
19544381175
-
Positive and negative selection on mammalian y chromosomes
-
10.1093/molbev/msi128. 15758204
-
Positive and negative selection on mammalian Y chromosomes. DT Gerrard DA Filatov, Mol Biol Evol 2005 22 1423 1432 10.1093/molbev/msi128 15758204
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1423-1432
-
-
Gerrard, D.T.1
Filatov, D.A.2
-
35
-
-
34547751991
-
Crystal structure of conserved domains 1 and 2 of the human DEAD-box helicase DDX3X in complex with the mononucleotide AMP
-
10.1016/j.jmb.2007.06.050. 17631897
-
Crystal structure of conserved domains 1 and 2 of the human DEAD-box helicase DDX3X in complex with the mononucleotide AMP. M Högbom R Collins S van den Berg, et al. J Mol Biol 2007 372 150 159 10.1016/j.jmb.2007.06.050 17631897
-
(2007)
J Mol Biol
, vol.372
, pp. 150-159
-
-
Högbom, M.1
Collins, R.2
Den Van, B.S.3
-
36
-
-
11144222543
-
Crystal structure of the human ATP-dependent splicing and export factor UAP56
-
10.1073/pnas.0408172101. 15585580
-
Crystal structure of the human ATP-dependent splicing and export factor UAP56. H Shi O Cordin CM Minder P Linder R Xu, Proc Natl Acad Sci USA 2004 101 17628 17633 10.1073/pnas.0408172101 15585580
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 17628-17633
-
-
Shi, H.1
Cordin, O.2
Minder, C.M.3
Linder, P.4
Xu, R.5
-
37
-
-
0037215580
-
A novel domain within the DEAD-box protein DP103 is essential for transcriptional repression and helicase activity
-
10.1128/MCB.23.1.414-423.2003. 12482992
-
A novel domain within the DEAD-box protein DP103 is essential for transcriptional repression and helicase activity. X Yan J Mouillet Q Ou Y Sadovsky, Mol Cell Biol 2003 23 414 423 10.1128/MCB.23.1.414-423.2003 12482992
-
(2003)
Mol Cell Biol
, vol.23
, pp. 414-423
-
-
Yan, X.1
Mouillet, J.2
Ou, Q.3
Sadovsky, Y.4
-
38
-
-
0034686435
-
An N-acetylated natural ligand of human histocompatibility leukocyte antigen (HLA)-B39. Classical major histocompatibility complex class i proteins bind peptides with a blocked NH(2) terminus in vivo
-
10.1084/jem.191.12.2083. 10859333
-
An N-acetylated natural ligand of human histocompatibility leukocyte antigen (HLA)-B39. Classical major histocompatibility complex class I proteins bind peptides with a blocked NH(2) terminus in vivo. J Yagüe I Alvarez D Rognan, et al. J Exp Med 2000 191 2083 2092 10.1084/jem.191.12.2083 10859333
-
(2000)
J Exp Med
, vol.191
, pp. 2083-2092
-
-
Yagüe, J.1
Alvarez, I.2
Rognan, D.3
-
39
-
-
21144458164
-
Immunoaffinity profiling of tyrosine phosphorylation in cancer cells
-
10.1038/nbt1046. 15592455
-
Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. J Rush A Moritz KA Lee, et al. Nat Biotechnol 2005 23 94 101 10.1038/nbt1046 15592455
-
(2005)
Nat Biotechnol
, vol.23
, pp. 94-101
-
-
Rush, J.1
Moritz, A.2
Lee, K.A.3
-
40
-
-
23144441172
-
Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometry
-
10.1038/nmeth776. 16094384
-
Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometry. WA Tao B Wollscheid R O'Brien, et al. Nat Methods 2005 2 591 598 10.1038/nmeth776 16094384
-
(2005)
Nat Methods
, vol.2
, pp. 591-598
-
-
Tao, W.A.1
Wollscheid, B.2
O'Brien, R.3
-
41
-
-
33847782587
-
Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry
-
10.1073/pnas.0611217104. 17287340
-
Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry. H Molina DM Horn N Tang S Mathivanan A Pandey, Proc Natl Acad Sci USA 2007 104 2199 2204 10.1073/pnas.0611217104 17287340
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 2199-2204
-
-
Molina, H.1
Horn, D.M.2
Tang, N.3
Mathivanan, S.4
Pandey, A.5
-
42
-
-
36348937958
-
Improved titanium dioxide enrichment of phosphopeptides from HeLa cells and high confident phosphopeptide identification by cross-validation of MS/MS and MS/MS/MS spectra
-
10.1021/pr070152u. 17924679
-
Improved titanium dioxide enrichment of phosphopeptides from HeLa cells and high confident phosphopeptide identification by cross-validation of MS/MS and MS/MS/MS spectra. L Yu Z Zhu KC Chan, et al. J Proteome Res 2007 6 4150 4162 10.1021/pr070152u 17924679
-
(2007)
J Proteome Res
, vol.6
, pp. 4150-4162
-
-
Yu, L.1
Zhu, Z.2
Chan, K.C.3
-
43
-
-
49449085504
-
A quantitative atlas of mitotic phosphorylation
-
10.1073/pnas.0805139105. 18669648
-
A quantitative atlas of mitotic phosphorylation. N Dephoure C Zhou J Villén, et al. Proc Natl Acad Sci USA 2008 105 10762 10767 10.1073/pnas.0805139105 18669648
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 10762-10767
-
-
Dephoure, N.1
Zhou, C.2
Villén, J.3
-
44
-
-
2442658049
-
Robust phosphoproteomic profiling of tyrosine phosphorylation sites from human T cells using immobilized metal affinity chromatography and tandem mass spectrometry
-
10.1021/ac035352d. 15144186
-
Robust phosphoproteomic profiling of tyrosine phosphorylation sites from human T cells using immobilized metal affinity chromatography and tandem mass spectrometry. LM Brill AR Salomon SB Ficarro, et al. Anal Chem 2004 76 2763 2772 10.1021/ac035352d 15144186
-
(2004)
Anal Chem
, vol.76
, pp. 2763-2772
-
-
Brill, L.M.1
Salomon, A.R.2
Ficarro, S.B.3
-
45
-
-
48349138726
-
Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle
-
10.1016/j.molcel.2008.07.007. 18691976
-
Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle. H Daub JV Olsen M Bairlein, et al. Mol Cell 2008 31 438 448 10.1016/j.molcel.2008.07.007 18691976
-
(2008)
Mol Cell
, vol.31
, pp. 438-448
-
-
Daub, H.1
Olsen, J.V.2
Bairlein, M.3
-
46
-
-
38449110993
-
Quantitative time-resolved phosphoproteomic analysis of mast cell signaling
-
17947660
-
Quantitative time-resolved phosphoproteomic analysis of mast cell signaling. L Cao K Yu C Banh, et al. J Immunol 2007 179 5864 5876 17947660
-
(2007)
J Immunol
, vol.179
, pp. 5864-5876
-
-
Cao, L.1
Yu, K.2
Banh, C.3
-
47
-
-
38649139336
-
Large-scale identification and evolution indexing of tyrosine phosphorylation sites from murine brain
-
10.1021/pr0701254. 18034455
-
Large-scale identification and evolution indexing of tyrosine phosphorylation sites from murine brain. BA Ballif GR Carey SR Sunyaev SP Gygi, J Proteome Res 2008 7 311 318 10.1021/pr0701254 18034455
-
(2008)
J Proteome Res
, vol.7
, pp. 311-318
-
-
Ballif, B.A.1
Carey, G.R.2
Sunyaev, S.R.3
Gygi, S.P.4
-
48
-
-
0036440480
-
Evidence for the presence of HABP1 pseudogene in multiple locations of mammalian genome
-
DOI 10.1089/104454902760599708
-
Evidence for the Presence of HABP1 Pseudogene in Multiple Locations of Mammalian Genome. M Majumdar A Bharadwaj I Ghosh S Ramachandran K Datta, DNA Cell Bio 2002 21 727 735 10.1089/104454902760599708 (Pubitemid 35373774)
-
(2002)
DNA and Cell Biology
, vol.21
, Issue.10
, pp. 727-735
-
-
Majumdar, M.1
Bharadwaj, A.2
Ghosh, I.3
Ramachandran, S.4
Datta, K.5
-
49
-
-
0036226603
-
BLAT - The BLAST-like alignment tool
-
11932250
-
BLAT - the BLAST-like alignment tool. WJ Kent, Genome Res 2002 12 656 664 11932250
-
(2002)
Genome Res
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
51
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
10.1093/bioinformatics/btm404. 17846036
-
Clustal W and Clustal X version 2.0. MA Larkin G Blackshields NP Brown, et al. Bioinformatics 2007 23 2947 2948 10.1093/bioinformatics/btm404 17846036
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
-
52
-
-
38549146894
-
The Pfam protein families database
-
10.1093/nar/gkm960. 18039703
-
The Pfam protein families database. RD Finn J Tate J Mistry, et al. Nucleic Acids Res 2008 36 281 288 10.1093/nar/gkm960 18039703
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 4281-288
-
-
Finn, R.D.1
Tate, J.2
Mistry, J.3
-
53
-
-
65449188232
-
Jalview Version 2 - A multiple sequence alignment editor and analysis workbench
-
10.1093/bioinformatics/btp033. 19151095
-
Jalview Version 2 - a multiple sequence alignment editor and analysis workbench. AM Waterhouse JB Procter DMA Martin M Clamp GJ Barton, Bioinformatics 2009 25 1189 1191 10.1093/bioinformatics/btp033 19151095
-
(2009)
Bioinformatics
, vol.25
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.A.3
Clamp, M.4
Barton, G.J.5
-
55
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
10.1093/molbev/msm092. 17488738
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. K Tamura J Dudley M Nei S Kumar, Mol Biol Evol 2007 24 1596 1599 10.1093/molbev/msm092 17488738
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
56
-
-
58049218990
-
TOPALi v2: A rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops
-
10.1093/bioinformatics/btn575. 18984599
-
TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. I Milne D Lindner M Bayer, et al. Bioinformatics 2009 25 126 127 10.1093/bioinformatics/btn575 18984599
-
(2009)
Bioinformatics
, vol.25
, pp. 126-127
-
-
Milne, I.1
Lindner, D.2
Bayer, M.3
-
58
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
10.1080/10635150390235520. 14530136
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. S Guindon O Gascuel, Syst Biol 2003 52 696 704 10.1080/10635150390235520 14530136
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
59
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
10.1093/bioinformatics/btg180. 12912839
-
MrBayes 3: Bayesian phylogenetic inference under mixed models. F Ronquist JP Huelsenbeck, Bioinformatics 2003 19 1572 1574 10.1093/bioinformatics/btg180 12912839
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
60
-
-
0033639150
-
Statistical methods for detecting molecular adaptation
-
10.1016/S0169-5347(00)01994-7. 11114436
-
Statistical methods for detecting molecular adaptation. Bielawski Yang, Trends Ecol Evol (Amst) 2000 15 496 503 10.1016/S0169-5347(00)01994-7 11114436
-
(2000)
Trends Ecol Evol (Amst)
, vol.15
, pp. 496-503
-
-
Yang, B.1
-
61
-
-
0033800170
-
Maximum-likelihood analysis of molecular adaptation in abalone sperm lysin reveals variable selective pressures among lineages and sites
-
11018152
-
Maximum-likelihood analysis of molecular adaptation in abalone sperm lysin reveals variable selective pressures among lineages and sites. Z Yang WJ Swanson VD Vacquier, Mol Biol Evol 2000 17 1446 1455 11018152
-
(2000)
Mol Biol Evol
, vol.17
, pp. 1446-1455
-
-
Yang, Z.1
Swanson, W.J.2
Vacquier, V.D.3
-
62
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
10.2307/2408678
-
Confidence Limits on Phylogenies: An Approach Using the Bootstrap. J Felsenstein, Evolution 1985 39 791 783 10.2307/2408678
-
(1985)
Evolution
, vol.39
, pp. 791-783
-
-
Felsenstein, J.1
-
63
-
-
3342920601
-
Prospects for inferring very large phylogenies by using the neighbor-joining method
-
10.1073/pnas.0404206101. 15258291
-
Prospects for inferring very large phylogenies by using the neighbor-joining method. K Tamura M Nei S Kumar, Proc Natl Acad Sci USA 2004 101 11030 11035 10.1073/pnas.0404206101 15258291
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 11030-11035
-
-
Tamura, K.1
Nei, M.2
Kumar, S.3
-
64
-
-
58149187898
-
PDBsum new things
-
10.1093/nar/gkn860. 18996896
-
PDBsum new things. RA Laskowski, Nucleic Acids Res 2009 37 355 359 10.1093/nar/gkn860 18996896
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 4355-359
-
-
Laskowski, R.A.1
|