Analysis of SSRs Uncovers Hierarchical Structure and Genetic Diversity in Chinese Soybean Landraces

Agricultural Sciences in China

Volumn 9, Issue 12, 2010, Pages 1739-1748

  Li, Ying hui ^a   Smulders, Marinus JM ^b   ChangG, Ru zhen ^a   Qiu, Li juan ^a  

^a INSTITUTE OF PLANT PROTECTION   (China)

^b WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

Diversity; Hierarchical structure; Landrace; Soybean

Indexed keywords

GLYCINE MAX;

EID: 78650322238     PISSN: 16712927     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1671-2927(09)60272-8     Document Type: Article

References (24)

1. Bergl RA, Vigilant L Genetic analysis reveals population structure and recent migration within the highly fragmented range of the cross river gorilla (Gorilla gorilla diehli). Molecular Ecology 2007, 16:501-516.
2. Bu MH, Pan TF A discussion on the cultivation regions of soybeans in China. Soybean Science 1982, 1:105-122. (in Chinese).
3. Chang RZ, Sun JY Catalogues of Chinese Soybean Germplasm and Resources 1991, 1-557. China Agricultural Press, Beijing, (sequel 1), (in Chinese).
4. Chang RZ, Sun JY, Qiu LJ, Chen YW Catalogues of Chinese Soybean Germplasm and Resources 1996, 1-359. China Agricultural Press, Beijing, China, (sequel 2), (in Chinese).
5. Chen YQ, Qiu LJ, Zhang RZ, Song SH, Xie H, Li XH, Lin RM RAPD analysis on genetic diversity of the preconcentrated core germplasms of autumn soybean in China. Chinese Journal of Oil Crop Science 2002, 24:21-24. (in Chinese).
6. Clauss MJ, Mitchell-Olds T Population genetic structure of Arabidopsis lyrata in Europe. Molecular Ecology 2006, 15:2753-2766.
7. Corander J, Waldmann P, Sillanpaa MJ Bayesian analysis of genetic differentiation between populations. Genetics 2003, 163:367-374.
8. Corander J, Waldmann P, Marttinen P, Sillanpaa MJ BAPS 2: enhanced possibilities for the analysis of genetic population structure. Bioinformatics 2004, 20:2363-2369.
9. Dawson KJ, Belkhir K A Bayesian approach to the identification of panmictic populations and the assignment of individuals. Genetic Research 2001, 78:59-77.
10. Dong YS, Zhuang BC, Zhao LM, Sun H, He MY The genetic diversity of annual wild soybeans grown in China. Theoretical and Applied Genetics 2001, 103:98-103.
11. Evanno G, Regnaut S, Goudet J Detecting the number of clusters of individuals using the software structure: a simulation study. Molecular Ecology 2005, 14:2611-2620.
12. Gai JY, Wang YS A study on the varietal eco-regions of soybeans in China. Scientia Agricultura Sinica 2001, 34:139-145. (in Chinese).
13. Latch EK, Dharmarajan G, Glaubitz JC, Rhodes OE Relative performance of Bayesian clustering software for inferring population substructure and individual assignment at low levels of population differentiation. Conservation Genetics 2006, 7:295-302.
14. Li YH, Guan RX, Liu ZH, Ma YS, Wang LX, Li LH, Lin FY, Luan WJ, Chen PY, Yan Z, et al. Genetic structure and diversity of cultivated soybean (Glycine max L. Merr.) landraces in China. Theoretical and Applied Genetics 2008, 117:857-871.
15. Lu SL, Chen SH, Chen CJ A study on the classification of soybean cultivation regions in China. Journal of Shanxi Agricultural University 1981, 1:9-17. (in Chinese).
16. Pessoa-Filho M, Beló A, Alcochete AAN, Rangel PHN, Ferreira ME A set of multiplex panels of microsatellite markers for rapid molecular characterization of rice accessions. BMC Plant Biology 2007, 7:23.
17. Pritchard JK, Stephens M, Donnelly P Inference of population structure using multilocus genotype data. Genetics 2000, 155:945-959.
18. Pritchard JK, Wen XQ, Falush D Documentation for structure software. ver. 2.2. [2010-3-20] http://pritch.bsd.uchicago.edu/software.
19. Risch N, Merikangas K The future of genetic studies of complex human diseases. Science 1996, 273:1516-1517.
20. Wang GX Catalogues of Chinese Soybean Germplasm and Resources 1982, 1-567. China Agricultural Press, Beijing, China.
21. Wang LX, Guan RX, Li YH, Lin FY, Luan WJ, Li W, Ma YS, Liu ZX, Chang RZ, Qiu LJ Genetic diversity of Chinese spring soybean germplasm revealed by SSR markers. Plant Breeding 2008, 127:56-61.
22. Wang Y, Gai J Study on the ecological regions of soybean in China. II. Ecological environment and representative varieties. Chinese Journal of Applied Ecology 2002, 13:71-75. (in Chinese).
23. Waples RS, Gaggiotti O What is a population? An empirical evaluation of some genetic methods for identifying the number of gene pools and their degree of connectivity. Molecular Ecology 2006, 15:1419-1439.
24. Xie H, Guan RX, Chang RZ, Qiu LJ Genetic diversity of Chinese summer soybean germplasm revealed by SSR markers. Chinese Science Bulletin 2005, 50:526-535. (in Chinese).