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Volumn 74, Issue 2, 2011, Pages 151-166

Proteomic analysis of human cataract aqueous humour: Comparison of one-dimensional gel LCMS with two-dimensional LCMS of unlabelled and iTRAQ®-labelled specimens

Author keywords

Orbitrap; 1D gel; 2D shotgun; Aqueous humour; Eye proteomics; ITRAQ

Indexed keywords

ALBUMIN; IMMUNOGLOBULIN G;

EID: 78650308103     PISSN: 18743919     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jprot.2010.10.002     Document Type: Article
Times cited : (83)

References (46)
  • 2
    • 33749523582 scopus 로고    scopus 로고
    • Organellar proteomics: turning inventories into insights
    • Andersen J.S., Mann M. Organellar proteomics: turning inventories into insights. EMBO Rep 2006, 7:874-879.
    • (2006) EMBO Rep , vol.7 , pp. 874-879
    • Andersen, J.S.1    Mann, M.2
  • 3
    • 33847698151 scopus 로고    scopus 로고
    • High-accuracy proteome maps of human body fluids
    • Schmidt A., Aebersold R. High-accuracy proteome maps of human body fluids. Genome Biol 2006, 7:242.
    • (2006) Genome Biol , vol.7 , pp. 242
    • Schmidt, A.1    Aebersold, R.2
  • 4
    • 35848955168 scopus 로고    scopus 로고
    • Mass spectrometry-based functional proteomics: from molecular machines to protein networks
    • Kocher T., Superti-Furga G. Mass spectrometry-based functional proteomics: from molecular machines to protein networks. Nat Methods 2007, 4:807-815.
    • (2007) Nat Methods , vol.4 , pp. 807-815
    • Kocher, T.1    Superti-Furga, G.2
  • 6
    • 4444335470 scopus 로고    scopus 로고
    • The ABC's (and XYZ's) of peptide sequencing
    • Steen H., Mann M. The ABC's (and XYZ's) of peptide sequencing. Nat Rev Mol Cell Biol 2004, 5:699-711.
    • (2004) Nat Rev Mol Cell Biol , vol.5 , pp. 699-711
    • Steen, H.1    Mann, M.2
  • 7
    • 37249014081 scopus 로고    scopus 로고
    • The biological impact of mass-spectrometry-based proteomics
    • Cravatt B.F., Simon G.M., Yates J.R. The biological impact of mass-spectrometry-based proteomics. Nature 2007, 450:991-1000.
    • (2007) Nature , vol.450 , pp. 991-1000
    • Cravatt, B.F.1    Simon, G.M.2    Yates, J.R.3
  • 8
    • 49849090387 scopus 로고    scopus 로고
    • Characterization of the vitreous proteome in diabetes without diabetic retinopathy and diabetes with proliferative diabetic retinopathy
    • Gao B.B., Chen X., Timothy N., Aiello L.P., Feener E.P. Characterization of the vitreous proteome in diabetes without diabetic retinopathy and diabetes with proliferative diabetic retinopathy. J Proteome Res 2008, 7:2516-2525.
    • (2008) J Proteome Res , vol.7 , pp. 2516-2525
    • Gao, B.B.1    Chen, X.2    Timothy, N.3    Aiello, L.P.4    Feener, E.P.5
  • 9
    • 36549073658 scopus 로고    scopus 로고
    • Profiling of vitreous proteomes from proliferative diabetic retinopathy and nondiabetic patients
    • Kim T., Kim S.J., Kim K., Kang U.B., Lee C., Park K.S., et al. Profiling of vitreous proteomes from proliferative diabetic retinopathy and nondiabetic patients. Proteomics 2007, 7:4203-4215.
    • (2007) Proteomics , vol.7 , pp. 4203-4215
    • Kim, T.1    Kim, S.J.2    Kim, K.3    Kang, U.B.4    Lee, C.5    Park, K.S.6
  • 10
    • 52649171414 scopus 로고    scopus 로고
    • Vitreous proteomic analysis of proliferative vitreoretinopathy
    • Yu J., Liu F., Cui S.J., Liu Y., Song Z.Y., Cao H., et al. Vitreous proteomic analysis of proliferative vitreoretinopathy. Proteomics 2008, 8:3667-3678.
    • (2008) Proteomics , vol.8 , pp. 3667-3678
    • Yu, J.1    Liu, F.2    Cui, S.J.3    Liu, Y.4    Song, Z.Y.5    Cao, H.6
  • 11
    • 33748754288 scopus 로고    scopus 로고
    • Identification of 491 proteins in the tear fluid proteome reveals a large number of proteases and protease inhibitors
    • de Souza G.A., Godoy L.M., Mann M. Identification of 491 proteins in the tear fluid proteome reveals a large number of proteases and protease inhibitors. Genome Biol 2006, 7:R72.
    • (2006) Genome Biol , vol.7
    • de Souza, G.A.1    Godoy, L.M.2    Mann, M.3
  • 12
    • 33750364830 scopus 로고    scopus 로고
    • The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins
    • Adachi J., Kumar C., Zhang Y., Olsen J.V., Mann M. The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins. Genome Biol 2006, 7:R80.
    • (2006) Genome Biol , vol.7
    • Adachi, J.1    Kumar, C.2    Zhang, Y.3    Olsen, J.V.4    Mann, M.5
  • 13
    • 34548324770 scopus 로고    scopus 로고
    • Serum and plasma proteomics
    • Issaq H.J., Xiao Z., Veenstra T.D. Serum and plasma proteomics. Chem Rev 2007, 107:3601-3620.
    • (2007) Chem Rev , vol.107 , pp. 3601-3620
    • Issaq, H.J.1    Xiao, Z.2    Veenstra, T.D.3
  • 14
    • 0030584801 scopus 로고    scopus 로고
    • Isolation and characterization of a unique natural killer cell inhibitory factor present in the anterior chamber of the eye
    • Apte R.S., Niederkorn J.Y. Isolation and characterization of a unique natural killer cell inhibitory factor present in the anterior chamber of the eye. J Immunol 1996, 156:2667-2673.
    • (1996) J Immunol , vol.156 , pp. 2667-2673
    • Apte, R.S.1    Niederkorn, J.Y.2
  • 16
    • 33645107513 scopus 로고    scopus 로고
    • See no evil, hear no evil, do no evil: the lessons of immune privilege
    • Niederkorn J.Y. See no evil, hear no evil, do no evil: the lessons of immune privilege. Nat Immunol 2006, 7:354-359.
    • (2006) Nat Immunol , vol.7 , pp. 354-359
    • Niederkorn, J.Y.1
  • 18
    • 49349112388 scopus 로고    scopus 로고
    • Transthyretin and complex protein pattern in aqueous humor of patients with primary open-angle glaucoma
    • Grus F.H., Joachim S.C., Sandmann S., Thiel U., Bruns K., Lackner K.J., et al. Transthyretin and complex protein pattern in aqueous humor of patients with primary open-angle glaucoma. Mol Vis 2008, 14:1437-1445.
    • (2008) Mol Vis , vol.14 , pp. 1437-1445
    • Grus, F.H.1    Joachim, S.C.2    Sandmann, S.3    Thiel, U.4    Bruns, K.5    Lackner, K.J.6
  • 19
    • 40749104608 scopus 로고    scopus 로고
    • Proteomic analysis of aqueous humor from patients with myopia
    • Duan X., Lu Q., Xue P., Zhang H., Dong Z., Yang F., et al. Proteomic analysis of aqueous humor from patients with myopia. Mol Vis 2008, 14:370-377.
    • (2008) Mol Vis , vol.14 , pp. 370-377
    • Duan, X.1    Lu, Q.2    Xue, P.3    Zhang, H.4    Dong, Z.5    Yang, F.6
  • 20
    • 14744273322 scopus 로고    scopus 로고
    • Proteomic analysis of aqueous humour from patients with acute corneal rejection
    • Funding M., Vorum H., Honore B., Nexo E., Ehlers N. Proteomic analysis of aqueous humour from patients with acute corneal rejection. Acta Ophthalmol Scand 2005, 83:31-39.
    • (2005) Acta Ophthalmol Scand , vol.83 , pp. 31-39
    • Funding, M.1    Vorum, H.2    Honore, B.3    Nexo, E.4    Ehlers, N.5
  • 21
    • 0031782995 scopus 로고    scopus 로고
    • Comparison of protein mixtures in aqueous humor by membrane preconcentration-capillary electrophoresis-mass spectrometry
    • Rohde E., Tomlinson A.J., Johnson D.H., Naylor S. Comparison of protein mixtures in aqueous humor by membrane preconcentration-capillary electrophoresis-mass spectrometry. Electrophoresis 1998, 19:2361-2370.
    • (1998) Electrophoresis , vol.19 , pp. 2361-2370
    • Rohde, E.1    Tomlinson, A.J.2    Johnson, D.H.3    Naylor, S.4
  • 23
    • 77649242514 scopus 로고    scopus 로고
    • Proteomic analysis of human aqueous humor using multidimensional protein identification technology
    • Richardson M.R., Price M.O., Price F.W., Pardo J.C., Grandin J.C., You J., et al. Proteomic analysis of human aqueous humor using multidimensional protein identification technology. Mol Vis 2009, 15:2740-2750.
    • (2009) Mol Vis , vol.15 , pp. 2740-2750
    • Richardson, M.R.1    Price, M.O.2    Price, F.W.3    Pardo, J.C.4    Grandin, J.C.5    You, J.6
  • 26
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
    • Ashburner M., Ball C.A., Blake J.A., Botstein D., Butler H., Cherry J.M., et al. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 2000, 25:25-29.
    • (2000) Nat Genet , vol.25 , pp. 25-29
    • Ashburner, M.1    Ball, C.A.2    Blake, J.A.3    Botstein, D.4    Butler, H.5    Cherry, J.M.6
  • 27
    • 0029927505 scopus 로고    scopus 로고
    • Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels
    • Shevchenko A., Wilm M., Vorm O., Mann M. Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. Anal Chem 1996, 68:850-858.
    • (1996) Anal Chem , vol.68 , pp. 850-858
    • Shevchenko, A.1    Wilm, M.2    Vorm, O.3    Mann, M.4
  • 28
    • 0037317228 scopus 로고    scopus 로고
    • Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics
    • Rappsilber J., Ishihama Y., Mann M. Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics. Anal Chem 2003, 75:663-670.
    • (2003) Anal Chem , vol.75 , pp. 663-670
    • Rappsilber, J.1    Ishihama, Y.2    Mann, M.3
  • 29
    • 19944432197 scopus 로고    scopus 로고
    • Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
    • Ross P.L., Huang Y.N., Marchese J.N., Williamson B., Parker K., Hattan S., et al. Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol Cell Proteomics 2004, 3:1154-1169.
    • (2004) Mol Cell Proteomics , vol.3 , pp. 1154-1169
    • Ross, P.L.1    Huang, Y.N.2    Marchese, J.N.3    Williamson, B.4    Parker, K.5    Hattan, S.6
  • 30
    • 30344451098 scopus 로고    scopus 로고
    • Two-dimensional separation of peptides using RP-RP-HPLC system with different pH in first and second separation dimensions
    • Gilar M., Olivova P., Daly A.E., Gebler J.C. Two-dimensional separation of peptides using RP-RP-HPLC system with different pH in first and second separation dimensions. J Sep Sci 2005, 28:1694-1703.
    • (2005) J Sep Sci , vol.28 , pp. 1694-1703
    • Gilar, M.1    Olivova, P.2    Daly, A.E.3    Gebler, J.C.4
  • 31
    • 0041358793 scopus 로고    scopus 로고
    • OLAV: towards high-throughput tandem mass spectrometry data identification
    • Colinge J., Masselot A., Giron M., Dessingy T., Magnin J. OLAV: towards high-throughput tandem mass spectrometry data identification. Proteomics 2003, 3:1454-1463.
    • (2003) Proteomics , vol.3 , pp. 1454-1463
    • Colinge, J.1    Masselot, A.2    Giron, M.3    Dessingy, T.4    Magnin, J.5
  • 32
  • 33
    • 26444539668 scopus 로고    scopus 로고
    • Orthogonality of separation in two-dimensional liquid chromatography
    • Gilar M., Olivova P., Daly A.E., Gebler J.C. Orthogonality of separation in two-dimensional liquid chromatography. Anal Chem 2005, 77:6426-6434.
    • (2005) Anal Chem , vol.77 , pp. 6426-6434
    • Gilar, M.1    Olivova, P.2    Daly, A.E.3    Gebler, J.C.4
  • 34
    • 33747791792 scopus 로고    scopus 로고
    • Optimized proteomic analysis of a mouse model of cerebellar dysfunction using amine-specific isobaric tags
    • Hu J., Qian J., Borisov O., Pan S., Li Y., Liu T., et al. Optimized proteomic analysis of a mouse model of cerebellar dysfunction using amine-specific isobaric tags. Proteomics 2006, 6:4321-4334.
    • (2006) Proteomics , vol.6 , pp. 4321-4334
    • Hu, J.1    Qian, J.2    Borisov, O.3    Pan, S.4    Li, Y.5    Liu, T.6
  • 35
    • 64549159728 scopus 로고    scopus 로고
    • MS-specific noise model reveals the potential of iTRAQ in quantitative proteomics
    • Hundertmark C., Fischer R., Reinl T., May S., Klawonn F., Jansch L. MS-specific noise model reveals the potential of iTRAQ in quantitative proteomics. Bioinformatics 2009, 25:1004-1011.
    • (2009) Bioinformatics , vol.25 , pp. 1004-1011
    • Hundertmark, C.1    Fischer, R.2    Reinl, T.3    May, S.4    Klawonn, F.5    Jansch, L.6
  • 37
    • 78650307193 scopus 로고
    • Carbonic anhydrase and cataracta lentis
    • Bakker A. Carbonic anhydrase and cataracta lentis. Br J Ophthalmol 1948, 32:910-912.
    • (1948) Br J Ophthalmol , vol.32 , pp. 910-912
    • Bakker, A.1
  • 38
    • 0028278794 scopus 로고
    • Induction of cataract-like changes in rat lens epithelial explants by transforming growth factor beta
    • Liu J., Hales A.M., Chamberlain C.G., McAvoy J.W. Induction of cataract-like changes in rat lens epithelial explants by transforming growth factor beta. Invest Ophthalmol Vis Sci 1994, 35:388-401.
    • (1994) Invest Ophthalmol Vis Sci , vol.35 , pp. 388-401
    • Liu, J.1    Hales, A.M.2    Chamberlain, C.G.3    McAvoy, J.W.4
  • 41
    • 0034687422 scopus 로고    scopus 로고
    • Structure of a serpin-protease complex shows inhibition by deformation
    • Huntington J.A., Read R.J., Carrell R.W. Structure of a serpin-protease complex shows inhibition by deformation. Nature 2000, 407:923-926.
    • (2000) Nature , vol.407 , pp. 923-926
    • Huntington, J.A.1    Read, R.J.2    Carrell, R.W.3
  • 42
    • 35748946026 scopus 로고    scopus 로고
    • Corticosteroid-binding globulin, a structural basis for steroid transport and proteinase-triggered release
    • Klieber M.A., Underhill C., Hammond G.L., Muller Y.A. Corticosteroid-binding globulin, a structural basis for steroid transport and proteinase-triggered release. J Biol Chem 2007, 282:29594-29603.
    • (2007) J Biol Chem , vol.282 , pp. 29594-29603
    • Klieber, M.A.1    Underhill, C.2    Hammond, G.L.3    Muller, Y.A.4
  • 43
    • 33748629941 scopus 로고    scopus 로고
    • Structural mechanism for the carriage and release of thyroxine in the blood
    • Zhou A., Wei Z., Read R.J., Carrell R.W. Structural mechanism for the carriage and release of thyroxine in the blood. Proc Natl Acad Sci USA 2006, 103:13321-13326.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 13321-13326
    • Zhou, A.1    Wei, Z.2    Read, R.J.3    Carrell, R.W.4
  • 44
  • 45
    • 0024263003 scopus 로고
    • The acute phase response: an overview
    • Kushner I. The acute phase response: an overview. Methods Enzymol 1988, 163:373-383.
    • (1988) Methods Enzymol , vol.163 , pp. 373-383
    • Kushner, I.1


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