-
1
-
-
0002768030
-
Evolutionary relationships of human malaria parasites
-
ASM Press, Washington, DC, I.W. Sherman (Ed.)
-
Ayala F.J., Escalante A.A., Lal A.A., Rich S.M. Evolutionary relationships of human malaria parasites. Malaria: Parasite Biology, Pathogenesis and Protection 1998, 285-300. ASM Press, Washington, DC. I.W. Sherman (Ed.).
-
(1998)
Malaria: Parasite Biology, Pathogenesis and Protection
, pp. 285-300
-
-
Ayala, F.J.1
Escalante, A.A.2
Lal, A.A.3
Rich, S.M.4
-
2
-
-
0033182111
-
Evolution of Plasmodium and the recent origin of the world populations of Plasmodium falciparum
-
Ayala F.J., Escalante A.A., Rich S.M. Evolution of Plasmodium and the recent origin of the world populations of Plasmodium falciparum. Parassitologia 1999, 41:55-68.
-
(1999)
Parassitologia
, vol.41
, pp. 55-68
-
-
Ayala, F.J.1
Escalante, A.A.2
Rich, S.M.3
-
3
-
-
4344577124
-
Conquering the intolerable burden of malaria: what's new, what's needed: a summary
-
Breman J.G., Alilio M.S., Mills A. Conquering the intolerable burden of malaria: what's new, what's needed: a summary. Am. J. Trop. Med. Hyg. 2004, 71:1-15.
-
(2004)
Am. J. Trop. Med. Hyg.
, vol.71
, pp. 1-15
-
-
Breman, J.G.1
Alilio, M.S.2
Mills, A.3
-
4
-
-
0037728535
-
Speculations on the origins of Plasmodium vivax malaria
-
Carter R. Speculations on the origins of Plasmodium vivax malaria. Trends Parasitol. 2003, 19:214-219.
-
(2003)
Trends Parasitol.
, vol.19
, pp. 214-219
-
-
Carter, R.1
-
5
-
-
0036780907
-
Evolutionary and historical aspects of the burden of malaria
-
Carter R., Mendis K.N. Evolutionary and historical aspects of the burden of malaria. Clin. Microbiol. Rev. 2002, 15:564-594.
-
(2002)
Clin. Microbiol. Rev.
, vol.15
, pp. 564-594
-
-
Carter, R.1
Mendis, K.N.2
-
6
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol. 2000, 17:540-552.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
7
-
-
0037015010
-
Inactivation of CMP-N-acetylneuraminic acid hydroxylase occurred prior to brain expansion during human evolution
-
Chou H.H., Hayakawa T., Diaz S., Krings M., Indriati E., Leakey M., Paabo S., Satta Y., Takahata N., Varki A. Inactivation of CMP-N-acetylneuraminic acid hydroxylase occurred prior to brain expansion during human evolution. Proc. Natl. Acad. Sci. U.S.A. 2002, 99:11736-11741.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 11736-11741
-
-
Chou, H.H.1
Hayakawa, T.2
Diaz, S.3
Krings, M.4
Indriati, E.5
Leakey, M.6
Paabo, S.7
Satta, Y.8
Takahata, N.9
Varki, A.10
-
8
-
-
0033771358
-
TCS: a computer program to estimate gene genealogies
-
Clement M., Posada D., Crandall K.A. TCS: a computer program to estimate gene genealogies. Mol. Ecol. 2000, 9:1657-1659.
-
(2000)
Mol. Ecol.
, vol.9
, pp. 1657-1659
-
-
Clement, M.1
Posada, D.2
Crandall, K.A.3
-
9
-
-
33750835869
-
The origin and age of Plasmodium vivax
-
Cornejo O.E., Escalante A.A. The origin and age of Plasmodium vivax. Trends Parasitol. 2006, 22:558-563.
-
(2006)
Trends Parasitol.
, vol.22
, pp. 558-563
-
-
Cornejo, O.E.1
Escalante, A.A.2
-
10
-
-
0037728538
-
The genetic diversity of Plasmodium vivax populations
-
Cui L., Escalante A.A., Imwong M., Snounou G. The genetic diversity of Plasmodium vivax populations. Trends Parasitol. 2003, 19:220-226.
-
(2003)
Trends Parasitol.
, vol.19
, pp. 220-226
-
-
Cui, L.1
Escalante, A.A.2
Imwong, M.3
Snounou, G.4
-
11
-
-
44949202470
-
Phylogeny and geography predict pathogen community similarity in wold primates and humans
-
Davies T.J., Pedersen A.B. Phylogeny and geography predict pathogen community similarity in wold primates and humans. Proc. R. Soc. B 2008, 275:1695-1701.
-
(2008)
Proc. R. Soc. B
, vol.275
, pp. 1695-1701
-
-
Davies, T.J.1
Pedersen, A.B.2
-
12
-
-
77953801740
-
African apes as reservoirs of Plasmodium falciparum and the origin and diversification of the Laverania subgenus
-
Duval L., Fourment M., Nerrienet E., Rousset D., Sadeuh Mba S.A., Goodman S.M., Andriaholinirina N.V., Randrianarivelojosia M., Paul R.E., Robert V., Ayala F.J., Ariey F. African apes as reservoirs of Plasmodium falciparum and the origin and diversification of the Laverania subgenus. Proc. Natl. Acad. Sci. U.S.A. 2010, 107:10561-10566.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 10561-10566
-
-
Duval, L.1
Fourment, M.2
Nerrienet, E.3
Rousset, D.4
Sadeuh Mba, S.A.5
Goodman, S.M.6
Andriaholinirina, N.V.7
Randrianarivelojosia, M.8
Paul, R.E.9
Robert, V.10
Ayala, F.J.11
Ariey, F.12
-
13
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, 32:1792-1797.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
14
-
-
0028113391
-
Phylogeny of the malarial genus Plasmodium, derived from rRNA gene sequences
-
Escalante A.A., Ayala F.J. Phylogeny of the malarial genus Plasmodium, derived from rRNA gene sequences. Proc. Natl. Acad. Sci. U.S.A. 1994, 91:11373-11377.
-
(1994)
Proc. Natl. Acad. Sci. U.S.A.
, vol.91
, pp. 11373-11377
-
-
Escalante, A.A.1
Ayala, F.J.2
-
15
-
-
0029002122
-
Evolutionary origin of human and primate malarias: evidence from the circumsporozoite protein gene
-
Escalante A.A., Barrio E., Ayala F.J. Evolutionary origin of human and primate malarias: evidence from the circumsporozoite protein gene. Mol. Biol. Evol. 1995, 12:616-626.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 616-626
-
-
Escalante, A.A.1
Barrio, E.2
Ayala, F.J.3
-
16
-
-
13844313937
-
A monkey's tale: the origin of Plasmodium vivax as a human malaria parasite
-
Escalante A.A., Cornejo O.E., Freeland D.E., Poe A.C., Durrego E., Collins W.E., Lal A.A. A monkey's tale: the origin of Plasmodium vivax as a human malaria parasite. Proc. Natl. Acad. Sci. U.S.A. 2005, 102:1980-1985.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 1980-1985
-
-
Escalante, A.A.1
Cornejo, O.E.2
Freeland, D.E.3
Poe, A.C.4
Durrego, E.5
Collins, W.E.6
Lal, A.A.7
-
17
-
-
3142740248
-
Assessing the effect of natural selection in malaria parasites
-
Escalante A.A., Cornejo O.E., Rojas A., Udhayakumar V., Lal A.A. Assessing the effect of natural selection in malaria parasites. Trends Parasitol. 2004, 20:388-395.
-
(2004)
Trends Parasitol.
, vol.20
, pp. 388-395
-
-
Escalante, A.A.1
Cornejo, O.E.2
Rojas, A.3
Udhayakumar, V.4
Lal, A.A.5
-
18
-
-
0032493346
-
The evolution of primate malaria parasites based on the gene encoding cytochrome b from the linear mitochondrial genome
-
Escalante A.A., Freeland D.E., Collins W.E., Lal A.A. The evolution of primate malaria parasites based on the gene encoding cytochrome b from the linear mitochondrial genome. Proc. Natl. Acad. Sci. U.S.A. 1998, 95:8124-8129.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 8124-8129
-
-
Escalante, A.A.1
Freeland, D.E.2
Collins, W.E.3
Lal, A.A.4
-
19
-
-
0019797407
-
Evolutionary trees from DNA sequences: a maximum likelihood approach
-
Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 1981, 17:368-376.
-
(1981)
J. Mol. Evol.
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
20
-
-
0000461280
-
Confidence limits on phylogenies: an approach using the bootstrap
-
Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
21
-
-
0038491562
-
Single-nucleotide polymorphisms and genome diversity in Plasmodium vivax
-
Feng X., Carlton J.M., Joy D.A., Mu J., Furuya T., Suh B.B., Wang Y., Barnwell J.W., Su X.Z. Single-nucleotide polymorphisms and genome diversity in Plasmodium vivax. Proc. Natl. Acad. Sci. U.S.A. 2003, 100:8502-8507.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 8502-8507
-
-
Feng, X.1
Carlton, J.M.2
Joy, D.A.3
Mu, J.4
Furuya, T.5
Suh, B.B.6
Wang, Y.7
Barnwell, J.W.8
Su, X.Z.9
-
22
-
-
67651163808
-
Patterns of co-speciation and host switching in primate malaria parasites
-
Garamszegi L.Z. Patterns of co-speciation and host switching in primate malaria parasites. Malar. J. 2009, 8:110.
-
(2009)
Malar. J.
, vol.8
, pp. 110
-
-
Garamszegi, L.Z.1
-
23
-
-
0028168856
-
A codon-based model of nucleotide substitution for protein-coding DNA sequences
-
Goldman N., Yang Z. A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol. Biol. Evol. 1994, 11:725-736.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 725-736
-
-
Goldman, N.1
Yang, Z.2
-
24
-
-
0030927831
-
Continuous in vitro propagation of the malaria parasite Plasmodium vivax
-
Golenda C.F., Li J., Rosenberg R. Continuous in vitro propagation of the malaria parasite Plasmodium vivax. Proc. Natl. Acad. Sci. U.S.A. 1997, 94:6786-6791.
-
(1997)
Proc. Natl. Acad. Sci. U.S.A.
, vol.94
, pp. 6786-6791
-
-
Golenda, C.F.1
Li, J.2
Rosenberg, R.3
-
25
-
-
0035403376
-
Variants of the Plasmodium vivax circumsporozoite protein (VK210 and VK247) in Colombian isolates
-
Gonzalez J.M., Hurtado S., Arevalo-Herrera M., Herrera S. Variants of the Plasmodium vivax circumsporozoite protein (VK210 and VK247) in Colombian isolates. Mem. Inst. Oswaldo Cruz 2001, 96:709-712.
-
(2001)
Mem. Inst. Oswaldo Cruz
, vol.96
, pp. 709-712
-
-
Gonzalez, J.M.1
Hurtado, S.2
Arevalo-Herrera, M.3
Herrera, S.4
-
26
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S., Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 2003, 52:696-704.
-
(2003)
Syst. Biol.
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
27
-
-
34547106790
-
Bayesian analysis of new and old malaria parasite DNA sequence data demonstrates the need for more phylogenetic signal to clarify the descent of Plasmodium falciparum
-
Hagner S.C., Misof B., Maier W.A., Kampen H. Bayesian analysis of new and old malaria parasite DNA sequence data demonstrates the need for more phylogenetic signal to clarify the descent of Plasmodium falciparum. Parasitol. Res. 2007, 101:493-503.
-
(2007)
Parasitol. Res.
, vol.101
, pp. 493-503
-
-
Hagner, S.C.1
Misof, B.2
Maier, W.A.3
Kampen, H.4
-
28
-
-
1842486672
-
The origin of malaria: mixed messages from genetic diversity
-
Hartl D.L. The origin of malaria: mixed messages from genetic diversity. Nat. Rev. Microbiol. 2004, 2:15-22.
-
(2004)
Nat. Rev. Microbiol.
, vol.2
, pp. 15-22
-
-
Hartl, D.L.1
-
29
-
-
33644780854
-
Fixation of the human-specific CMP-N-acetylneuraminic acid hydroxylase pseudogene and implications of haplotype diversity for human evolution
-
Hayakawa T., Aki I., Varki A., Satta Y., Takahata N. Fixation of the human-specific CMP-N-acetylneuraminic acid hydroxylase pseudogene and implications of haplotype diversity for human evolution. Genetics 2006, 172:1139-1146.
-
(2006)
Genetics
, vol.172
, pp. 1139-1146
-
-
Hayakawa, T.1
Aki, I.2
Varki, A.3
Satta, Y.4
Takahata, N.5
-
30
-
-
33845905179
-
Genome variation and evolution of the malaria parasite Plasmodium falciparum
-
Jeffares D.C., Pain A., Berry A., Cox A.V., Stalker J., Ingle C.E., Thomas A., Quail M.A., Siebenthall K., Uhlemann A.C., Kyes S., Krishna S., Newbold C., Dermitzakis E.T., Berriman M. Genome variation and evolution of the malaria parasite Plasmodium falciparum. Nat. Genet. 2007, 39:120-125.
-
(2007)
Nat. Genet.
, vol.39
, pp. 120-125
-
-
Jeffares, D.C.1
Pain, A.2
Berry, A.3
Cox, A.V.4
Stalker, J.5
Ingle, C.E.6
Thomas, A.7
Quail, M.A.8
Siebenthall, K.9
Uhlemann, A.C.10
Kyes, S.11
Krishna, S.12
Newbold, C.13
Dermitzakis, E.T.14
Berriman, M.15
-
31
-
-
0037432740
-
Early origin and recent expansion of Plasmodium falciparum
-
Joy D.A., Feng X., Mu J., Furuya T., Chotivanich K., Krettli A.U., Ho M., Wang A., White N.J., Suh E., Beerli P., Su X.Z. Early origin and recent expansion of Plasmodium falciparum. Science 2003, 300:318-321.
-
(2003)
Science
, vol.300
, pp. 318-321
-
-
Joy, D.A.1
Feng, X.2
Mu, J.3
Furuya, T.4
Chotivanich, K.5
Krettli, A.U.6
Ho, M.7
Wang, A.8
White, N.J.9
Suh, E.10
Beerli, P.11
Su, X.Z.12
-
32
-
-
0026764550
-
Circumsporozoite genotyping of global isolates of Plasmodium vivax from dried blood specimens
-
Kain K.C., Brown A.E., Webster H.K., Wirtz R.A., Keystone J.S., Rodriguez M.H., Kinahan J., Rowland M., Lanar D.E. Circumsporozoite genotyping of global isolates of Plasmodium vivax from dried blood specimens. J. Clin. Microbiol. 1992, 30:1863-1866.
-
(1992)
J. Clin. Microbiol.
, vol.30
, pp. 1863-1866
-
-
Kain, K.C.1
Brown, A.E.2
Webster, H.K.3
Wirtz, R.A.4
Keystone, J.S.5
Rodriguez, M.H.6
Kinahan, J.7
Rowland, M.8
Lanar, D.E.9
-
33
-
-
77649266431
-
On the diversity of malaria parasites in African apes and the origin of Plasmodium falciparum from Bonobos
-
Krief S., Escalante A.A., Pacheco M.A., Mugisha L., André C., Halbwax M., Fischer A., Krief J.M., Kasenene J.M., Crandfield M., Cornejo O.E., Chavatte J.M., Lin C., Letourneur F., Grüner A.C., McCutchan T.F., Rénia L., Snounou G. On the diversity of malaria parasites in African apes and the origin of Plasmodium falciparum from Bonobos. PLoS Pathog. 2010, 6:e1000765.
-
(2010)
PLoS Pathog.
, vol.6
-
-
Krief, S.1
Escalante, A.A.2
Pacheco, M.A.3
Mugisha, L.4
André, C.5
Halbwax, M.6
Fischer, A.7
Krief, J.M.8
Kasenene, J.M.9
Crandfield, M.10
Cornejo, O.E.11
Chavatte, J.M.12
Lin, C.13
Letourneur, F.14
Grüner, A.C.15
McCutchan, T.F.16
Rénia, L.17
Snounou, G.18
-
34
-
-
33645108873
-
LAMARC 2.0: maximum likelihood and Bayesian estimation of population parameters
-
Kuhner M.K. LAMARC 2.0: maximum likelihood and Bayesian estimation of population parameters. Bioinformatics 2006, 22:768-770.
-
(2006)
Bioinformatics
, vol.22
, pp. 768-770
-
-
Kuhner, M.K.1
-
35
-
-
45949109669
-
MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences
-
Kumar S., Dudley J., Nei M., Tamura K. MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief. Bioinform. 2008, 9:299-306.
-
(2008)
Brief. Bioinform.
, vol.9
, pp. 299-306
-
-
Kumar, S.1
Dudley, J.2
Nei, M.3
Tamura, K.4
-
36
-
-
0032580152
-
A molecular timescale for vertebrate evolution
-
Kumar S., Hedges S.B. A molecular timescale for vertebrate evolution. Nature 1998, 392:917-920.
-
(1998)
Nature
, vol.392
, pp. 917-920
-
-
Kumar, S.1
Hedges, S.B.2
-
37
-
-
5144220072
-
Meager genetic variability of the human malaria agent Plasmodium vivax
-
Leclerc M.C., Durand P., Gauthier C., Patot S., Billotte N., Menegon M., Severini C., Ayala F.J., Renaud F. Meager genetic variability of the human malaria agent Plasmodium vivax. Proc. Natl. Acad. Sci. U.S.A. 2004, 101:14455-14460.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 14455-14460
-
-
Leclerc, M.C.1
Durand, P.2
Gauthier, C.3
Patot, S.4
Billotte, N.5
Menegon, M.6
Severini, C.7
Ayala, F.J.8
Renaud, F.9
-
38
-
-
65649117685
-
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
-
Librado P., Rozas J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 2009, 25:1451-1452.
-
(2009)
Bioinformatics
, vol.25
, pp. 1451-1452
-
-
Librado, P.1
Rozas, J.2
-
39
-
-
27344442280
-
Plasmodium vivax: recent world expansion and genetic identity to Plasmodium simium
-
Lim C.S., Tazi L., Ayala F.J. Plasmodium vivax: recent world expansion and genetic identity to Plasmodium simium. Proc. Natl. Acad. Sci. U.S.A. 2005, 102:15523-15528.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 15523-15528
-
-
Lim, C.S.1
Tazi, L.2
Ayala, F.J.3
-
40
-
-
0021232493
-
The Duffy blood groups, vivax malaria, and malaria selection in human populations: a review
-
Livingstone F.B. The Duffy blood groups, vivax malaria, and malaria selection in human populations: a review. Hum. Biol. 1984, 56:413-425.
-
(1984)
Hum. Biol.
, vol.56
, pp. 413-425
-
-
Livingstone, F.B.1
-
42
-
-
24644481321
-
Evolution of human-chimpanzee differences in malaria susceptibility: relationship to human genetic loss of N-glycolylneuraminic acid
-
Martin M.J., Rayner J.C., Gagneux P., Barnwell J.W., Varki A. Evolution of human-chimpanzee differences in malaria susceptibility: relationship to human genetic loss of N-glycolylneuraminic acid. Proc. Natl. Acad. Sci. U.S.A. 2005, 102:12819-12824.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 12819-12824
-
-
Martin, M.J.1
Rayner, J.C.2
Gagneux, P.3
Barnwell, J.W.4
Varki, A.5
-
43
-
-
41049117759
-
A three-genome phylogeny of malaria parasites (Plasmodium and closely related genera): evolution of life-history traits and host switches
-
Martinsen E.S., Perkins S.L., Schall J.J. A three-genome phylogeny of malaria parasites (Plasmodium and closely related genera): evolution of life-history traits and host switches. Mol. Phylogenet. Evol. 2008, 47:261-273.
-
(2008)
Mol. Phylogenet. Evol.
, vol.47
, pp. 261-273
-
-
Martinsen, E.S.1
Perkins, S.L.2
Schall, J.J.3
-
44
-
-
0017598627
-
Further evidence for the parasitic origin of the surface coat on Malaria merozoites
-
Mason S.J., Aikawa M., Shiroishi T., Miller L.H. Further evidence for the parasitic origin of the surface coat on Malaria merozoites. Am. J. Trop. Med. Hyg. 1977, 26:195-197.
-
(1977)
Am. J. Trop. Med. Hyg.
, vol.26
, pp. 195-197
-
-
Mason, S.J.1
Aikawa, M.2
Shiroishi, T.3
Miller, L.H.4
-
45
-
-
0017686251
-
The Duffy blood group determinants: their role in the susceptibility of human and animal erythrocytes to Plasmodium knowlesi malaria
-
Mason S.J., Miller L.H., Shiroishi T., Dvorak J.A., McGinniss M.H. The Duffy blood group determinants: their role in the susceptibility of human and animal erythrocytes to Plasmodium knowlesi malaria. Br. J. Haematol. 1977, 36:327-335.
-
(1977)
Br. J. Haematol.
, vol.36
, pp. 327-335
-
-
Mason, S.J.1
Miller, L.H.2
Shiroishi, T.3
Dvorak, J.A.4
McGinniss, M.H.5
-
46
-
-
0034967932
-
The neglected burden of Plasmodium vivax malaria
-
Mendis K., Sina B.J., Marchesini P., Carter R. The neglected burden of Plasmodium vivax malaria. Am. J. Trop. Med. Hyg. 2001, 64:97-106.
-
(2001)
Am. J. Trop. Med. Hyg.
, vol.64
, pp. 97-106
-
-
Mendis, K.1
Sina, B.J.2
Marchesini, P.3
Carter, R.4
-
47
-
-
0037130233
-
Chromosome-wide SNPs reveal an ancient origin for Plasmodium falciparum
-
Mu J., Duan J., Makova K.D., Joy D.A., Huynh C.Q., Branch O.H., Li W.H., Su X.Z. Chromosome-wide SNPs reveal an ancient origin for Plasmodium falciparum. Nature 2002, 418:323-326.
-
(2002)
Nature
, vol.418
, pp. 323-326
-
-
Mu, J.1
Duan, J.2
Makova, K.D.3
Joy, D.A.4
Huynh, C.Q.5
Branch, O.H.6
Li, W.H.7
Su, X.Z.8
-
48
-
-
25444533019
-
Host switch leads to emergence of Plasmodium vivax malaria in humans
-
Mu J., Joy D.A., Duan J., Huang Y., Carlton J., Walker J., Barnwell J., Beerli P., Charleston M.A., Pybus O.G., Su X.Z. Host switch leads to emergence of Plasmodium vivax malaria in humans. Mol. Biol. Evol. 2005, 22:1686-1693.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1686-1693
-
-
Mu, J.1
Joy, D.A.2
Duan, J.3
Huang, Y.4
Carlton, J.5
Walker, J.6
Barnwell, J.7
Beerli, P.8
Charleston, M.A.9
Pybus, O.G.10
Su, X.Z.11
-
49
-
-
24644445650
-
Malaria risk: estimating clinical episodes of malaria
-
discussion E4-5
-
Nahlen B.L., Korenromp E.L., Miller J.M., Shibuya K. Malaria risk: estimating clinical episodes of malaria. Nature 2005, 437:E3. discussion E4-5.
-
(2005)
Nature
, vol.437
-
-
Nahlen, B.L.1
Korenromp, E.L.2
Miller, J.M.3
Shibuya, K.4
-
50
-
-
0031972161
-
Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
-
Nielsen R., Yang Z. Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. Genetics 1998, 148:929-936.
-
(1998)
Genetics
, vol.148
, pp. 929-936
-
-
Nielsen, R.1
Yang, Z.2
-
51
-
-
9644301241
-
Model selection and model averaging in phylogenetics: Advantages of akaike information criterion and Bayesian approaches over likelihood ratio tests
-
Posada D., Buckley T.R. Model selection and model averaging in phylogenetics: Advantages of akaike information criterion and Bayesian approaches over likelihood ratio tests. Syst. Biol. 2004, 53:793-808.
-
(2004)
Syst. Biol.
, vol.53
, pp. 793-808
-
-
Posada, D.1
Buckley, T.R.2
-
52
-
-
0031773680
-
MODELTEST: testing the model of DNA substitution
-
Posada D., Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 1998, 14:817-818.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
53
-
-
76549105518
-
African great apes are natural hosts of multiple related malaria species, including Plasmodium falciparum
-
Prugnolle F., Durand P., Neel C., Ollomo B., Ayala F.J., Arnathau C., Etienne L., Mpoudi-Ngole E., Nkoghe D., Leroy E., Delaporte E., Peeters M., Renaud F. African great apes are natural hosts of multiple related malaria species, including Plasmodium falciparum. Proc. Natl. Acad. Sci. U.S.A. 2010, 107:1458-1463.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 1458-1463
-
-
Prugnolle, F.1
Durand, P.2
Neel, C.3
Ollomo, B.4
Ayala, F.J.5
Arnathau, C.6
Etienne, L.7
Mpoudi-Ngole, E.8
Nkoghe, D.9
Leroy, E.10
Delaporte, E.11
Peeters, M.12
Renaud, F.13
-
54
-
-
0030208897
-
Phylogenetic relationship among the malaria parasites based on small subunit rRNA gene sequences: monophyletic nature of the human malaria parasite, Plasmodium falciparum
-
Qari S.H., Shi Y.P., Pieniazek N.J., Collins W.E., Lal A.A. Phylogenetic relationship among the malaria parasites based on small subunit rRNA gene sequences: monophyletic nature of the human malaria parasite, Plasmodium falciparum. Mol. Phylogenet. Evol. 1996, 6:157-165.
-
(1996)
Mol. Phylogenet. Evol.
, vol.6
, pp. 157-165
-
-
Qari, S.H.1
Shi, Y.P.2
Pieniazek, N.J.3
Collins, W.E.4
Lal, A.A.5
-
55
-
-
5344230543
-
-
Institute of Evolutionary Biology, Edinburgh, Available from
-
Rambaut A., Drummond A.J. Tracer: MCMC Trace Analysis Tool 2009, Institute of Evolutionary Biology, Edinburgh, Available from. http://tree.bio.ed.ac.uk/software/tracer, 1.4.1 edition.
-
(2009)
Tracer: MCMC Trace Analysis Tool
-
-
Rambaut, A.1
Drummond, A.J.2
-
56
-
-
0034691080
-
Population structure and recent evolution of Plasmodium falciparum
-
Rich S.M., Ayala F.J. Population structure and recent evolution of Plasmodium falciparum. Proc. Natl. Acad. Sci. U.S.A. 2000, 97:6994-7001.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 6994-7001
-
-
Rich, S.M.1
Ayala, F.J.2
-
57
-
-
0346750905
-
Progress in malaria research: the case for phylogenetics
-
Rich S.M., Ayala F.J. Progress in malaria research: the case for phylogenetics. Adv. Parasitol. 2003, 54:255-280.
-
(2003)
Adv. Parasitol.
, vol.54
, pp. 255-280
-
-
Rich, S.M.1
Ayala, F.J.2
-
58
-
-
70349301459
-
The origin of malignant malaria
-
Rich S.M., Leendertz F.H., Xu G., LeBreton M., Djoko C.F., Aminake M.N., Takang E.E., Diffo J.L., Pike B.L., Rosenthal B.M., Formenty P., Boesch C., Ayala F.J., Wolfe N.D. The origin of malignant malaria. Proc. Natl. Acad. Sci. U.S.A. 2009, 106:14902-14907.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 14902-14907
-
-
Rich, S.M.1
Leendertz, F.H.2
Xu, G.3
LeBreton, M.4
Djoko, C.F.5
Aminake, M.N.6
Takang, E.E.7
Diffo, J.L.8
Pike, B.L.9
Rosenthal, B.M.10
Formenty, P.11
Boesch, C.12
Ayala, F.J.13
Wolfe, N.D.14
-
59
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F., Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
60
-
-
0024367007
-
Circumsporozoite protein heterogeneity in the human malaria parasite Plasmodium vivax
-
Rosenberg R., Wirtz R.A., Lanar D.E., Sattabongkot J., Hall T., Waters A.P., Prasittisuk C. Circumsporozoite protein heterogeneity in the human malaria parasite Plasmodium vivax. Science 1989, 245:973-976.
-
(1989)
Science
, vol.245
, pp. 973-976
-
-
Rosenberg, R.1
Wirtz, R.A.2
Lanar, D.E.3
Sattabongkot, J.4
Hall, T.5
Waters, A.P.6
Prasittisuk, C.7
-
62
-
-
34547489084
-
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
-
Talavera G., Castresana J. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst. Biol. 2007, 56:564-577.
-
(2007)
Syst. Biol.
, vol.56
, pp. 564-577
-
-
Talavera, G.1
Castresana, J.2
-
63
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software, version 4.0
-
Tamura K., Dudley J., Nei M., Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software, version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
64
-
-
0026662698
-
A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation
-
Templeton A.R., Crandall K.A., Sing C.F. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics 1992, 132:619-633.
-
(1992)
Genetics
, vol.132
, pp. 619-633
-
-
Templeton, A.R.1
Crandall, K.A.2
Sing, C.F.3
-
65
-
-
34247565506
-
Glycan-based interactions involving vertebrate sialic-acid-recognizing proteins
-
Varki A. Glycan-based interactions involving vertebrate sialic-acid-recognizing proteins. Nature 2007, 446:1023-1029.
-
(2007)
Nature
, vol.446
, pp. 1023-1029
-
-
Varki, A.1
-
66
-
-
70349296876
-
Human-specific evolution of sialic acid targets: explaining the malignant malaria mystery?
-
Varki A., Gagneux P. Human-specific evolution of sialic acid targets: explaining the malignant malaria mystery?. Proc. Natl. Acad. Sci. U.S.A. 2009, 106:14739-14740.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 14739-14740
-
-
Varki, A.1
Gagneux, P.2
-
67
-
-
35948997421
-
Genomic differences between humans and chimpanzees
-
Varki A., Nelson D. Genomic differences between humans and chimpanzees. Ann. Rev. Anthropol. 2007, 36:191-209.
-
(2007)
Ann. Rev. Anthropol.
, vol.36
, pp. 191-209
-
-
Varki, A.1
Nelson, D.2
-
68
-
-
0035919665
-
Recent origin of Plasmodium falciparum from a single progenitor
-
Volkman S.K., Barry A.E., Lyons E.J., Nielsen K.M., Thomas S.M., Choi M., Thakore S.S., Day K.P., Wirth D.F., Hartl D.L. Recent origin of Plasmodium falciparum from a single progenitor. Science 2001, 293:482-484.
-
(2001)
Science
, vol.293
, pp. 482-484
-
-
Volkman, S.K.1
Barry, A.E.2
Lyons, E.J.3
Nielsen, K.M.4
Thomas, S.M.5
Choi, M.6
Thakore, S.S.7
Day, K.P.8
Wirth, D.F.9
Hartl, D.L.10
-
69
-
-
0026334859
-
Plasmodium falciparum appears to have arisen as a result of lateral transfer between avian and human hosts
-
Waters A.P., Higgins D.G., McCutchan T.F. Plasmodium falciparum appears to have arisen as a result of lateral transfer between avian and human hosts. Proc. Natl. Acad. Sci. U.S.A. 1991, 88:3140-3144.
-
(1991)
Proc. Natl. Acad. Sci. U.S.A.
, vol.88
, pp. 3140-3144
-
-
Waters, A.P.1
Higgins, D.G.2
McCutchan, T.F.3
-
70
-
-
34547803197
-
PAML 4: phylogenetic analysis by maximum likelihood
-
Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 2007, 24:1586-1591.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
71
-
-
0034097381
-
Codon-substitution models for heterogeneous selection pressure at amino acid sites
-
Yang Z., Nielsen R., Goldman N., Pedersen A.M. Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 2000, 155:431-449.
-
(2000)
Genetics
, vol.155
, pp. 431-449
-
-
Yang, Z.1
Nielsen, R.2
Goldman, N.3
Pedersen, A.M.4
-
72
-
-
16344378246
-
Bayes empirical bayes inference of amino acid sites under positive selection
-
Yang Z., Wong W.S., Nielsen R. Bayes empirical bayes inference of amino acid sites under positive selection. Mol. Biol. Evol. 2005, 22:1107-1118.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1107-1118
-
-
Yang, Z.1
Wong, W.S.2
Nielsen, R.3
|