Genetic diversity and phylogenetic relationships of Prunus microcarpa C.A. Mey. subsp. tortusa analyzed by simple sequence repeats (SSRs)

Scientia Horticulturae

Volumn 127, Issue 3, 2011, Pages 220-227

  Nas, Mehmet Nuri ^a   Bolek, Yuksel ^a   Bardak, Adem ^b  

^a KAHRAMANMARAS SUTCU IMAM UNIVERSITY   (Turkey)

^b BINGOL UNIVERSITY   (Turkey)

Author keywords

Genetic diversity; Geographic origin; Microsatellite; Prunus microcarpa

Indexed keywords

CLUSTER ANALYSIS; CULTIVAR; DICOTYLEDON; DISPERSION; GENETIC MARKER; GENETIC VARIATION; GENOTYPE; GEOGRAPHICAL REGION; MOLECULAR ANALYSIS; PHYLOGENETICS; SHRUB;

MESOPOTAMIA;

PRUNUS; PRUNUS ARMENIACA; PRUNUS AVIUM; PRUNUS DOMESTICA; PRUNUS DULCIS; PRUNUS MICROCARPA; PRUNUS PERSICA;

EID: 78650185110     PISSN: 03044238     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scienta.2010.09.018     Document Type: Article

References (35)

1. Aradhya M.K., Weeks C., Simon C.J. Molecular characterization of variability and relationships among seven cultivated and selected wild species of Prunus L. using amplified fragment length polymorphism. Sci. Hortic. 2004, 103:131-144.
2. Aranzana M.J., Pineda A., Cosson P., Dirlewanger E., Ascasibar J., Cipriani G., Ryder C.D., Testolin R., Abbott A., King G.J., Iezzoni A.F., Arus P. A set of simple-sequence repeat (SSR) markers covering the Prunus genome. Theor. Appl. Genet. 2003, 106:819-825.
3. Baránek M., Raddová J., Pidra M. Comparative analysis of genetic diversity in Prunus L. as revealed by RAPD and SSR markers. Sci. Hortic. 2006, 108:253-259.
4. Bortiri E., Vanden Heuvel B., Potter D. Phylogenetic analysis of morphology in Prunus reveals extensive homoplasy. Plant Syst. Evol. 2006, 259:53-71.
5. Cipriani G., Lot G., Huang W.G., Marrazzo M.T., Peterlunger E., Testolin R. AC/GT and AG/CT microsatellite repeats in peach (Prunus persica (L.) Batsch): isolation, characterization and cross-species amplification in Prunus. Theor. Appl. Genet. 1999, 99:65-72.
6. Dettori M.T., Quarta R., Verde I. A peach linkage map integrating RFLPs, SSRs, RAPDs, and morphological markers. Genome 2001, 44:783-790.
7. Dirlewanger E., Crosson A., Tavaud P., Aranzana M.J., Poizat C., Zanetto A., Arus P., Laigret L. Development of microsatellite markers in peach and their use in genetic diversity analysis in peach and sweet cherry. Theor. Appl. Genet. 2002, 105:127-138.
8. Downey L.D., Iezzoni A.F. Polymorphic DNA markers in black cherry are identified using sequences from sweet cherry, peach, and sour cherry. J. Am. Soc. Hortic. Sci. 2000, 125:76-80.
9. Exadaktylou E., Thomidis T. Susceptibility of Gisela 5 and Maxma 14 cherry rootstocks to four Phytophthora species. Sci. Hortic. 2005, 106:125-128.
10. Excoffier L., Smouse P.E., Quattro J.M. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 1992, 131:479-491.
11. FAO, 2007. (12.0.2008). http://faostat.fao.org/site/567/default.aspx.
12. Felipe A.J. Rootstocks for almonds. FAO Nucis Newslett. 1995, 4:6-9.
13. Hormaza J.I. Molecular characterization and similarity relationships among apricot genotypes using simple sequence repeats. Theor. Appl. Genet. 2002, 104:321-328.
14. Kumar S., Tamura K., Nei M. MEGA 3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 2004, 5:150-163.
15. Lambert P., Hagen L.S., Arus P., Audergon J.M. Genetic linkage maps of two apricot cultivars (Prunus armeniaca L.) compared with the almond Texas×peach Earlygold reference map for Prunus. Theor. Appl. Genet. 2004, 108:1120-1130.
16. Lopes M.S., Sefc K.M., Laimer M., Machado A.D.C. Identification of microsatellite loci in apricot. Mol. Ecol. Notes 2002, 2:24-26.
17. Martínez-Gómez P., Sánchez-Pérez R., Rubio M., Dicenta F., Gradziel T.M., Sozzi G.O. Application of recent biotechnologies to Prunus tree crop genetic improvement. Cien. Inv. Agr. 2005, 32(2):73-96.
18. Martínez-Gómez P., Gradziel T.M. Sexual polyembryony in almond. Sex Plant Reprod. 2003, 16:135-139.
19. Nei M. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 1978, 89:583-590.
20. Read P.E., Yang Q. Novel growth regulator delivery systems for in vitro culture of horticultural crops. Acta Hortic. 1987, 212:55-59.
21. Sánchez-Pérez R., Ruiz D., Dicenta F., Egea J., Martinez-Gómez P. Application of simple sequence repeat (SSR) markers in apricot breeding: molecular characterization, protection, and genetic relationships. Sci. Hortic. 2005, 103:305-315.
22. Schneider S., Roessli D., Excoffier L. Arlequin ver. 2.000: a software for population genetics data analysis 2000, Genetics and Biometry Laboratory, University of Geneva, Geneva, Switzerland.
23. Scorza R., Mehlenbacher S.A., Lightner G.W. Inbreeding and coancestry of freestone peach cultivars of the eastern United States and implications for peach germplasm improvement. J. Am. Soc. Hortic. Sci. 1985, 110:547-552.
24. Sosinski B., Gannavarapu M., Hager L.E., Beck L.E., King G.J., Ryder C.D., Rajapakse S., Baird W.V., Ballard R.E., Abbott A.G. Characterization of microsatellite markers in peach (Prunus persica (L.) Batsch). Theor. Appl. Genet. 2000, 101:421-428.
25. Testolin R., Marrazzo T., Cipriani G., Quarta R., Verde I., Dettori T., Pancaldi M., Sansavini S. Microsatellite DNA in peach (Prunus persica (L.) Batsch) and it use in fingerprinting and testing the genetic origin of cultivars. Genome 2000, 43:512-520.
26. Testolin R., Messina R., Lain O., Marrazzo M.T., Huang W.G., Cipriani G. Microsatellites isolated in almond from an AC-repeat enriched library. Mol. Ecol. Notes 2004, 4:459-461.
27. Verde I., Lauria M., Dettori M.T., Vendramin E., Balconi C., Micali S., Wang Y., Marrazzo M.T., Cipriani G., Hartings H., Testolin R., Abbott A.G., Motto M., Quarta R. Microsatellite and AFLP markers in the Prunus persica [L. (Batsch)]×P. ferganensis BC1 linkage map: saturation and coverage improvement. Theor. Appl. Genet. 2005, 111:1013-1021.
28. Vilanova S., Romero C., Abbott A.G., Llacer G., Badenes M.L. An apricot (Prunus armeniaca L.) F2 progeny linkage map based on SSR and AFLP markers, mapping plum pox virus resistance and self-incompatibility traits. Theor. Appl. Genet. 2003, 107:239-247.
29. Webster T., Tobutt K., Evans K. Breeding and evaluation of new rootstocks for apple, pear and sweet cherry. Compact Fruit Tree 2000, 33:100-104.
30. Wright S. Evolution and the genetics of populations. Variability Within and Among Natural Populations 1978, vol. 4. Univ. Chicago Press, Chicago, IL, p. 439.
31. Yamamoto T., Mochida K., Imai T., Shi Y.Z., Ogiwara I., Hayashi T. Microsatellite markers in peach [Prunus persica (L.) Batsch] derived from an enriched genomic and cDNA libraries. Mol. Ecol. Notes 2002, 2:298-301.
32. Yamamoto T., Yamaguchi M., Hayashi T. An integrated genetic map of peach by SSR, STS, AFLP and RAPD. J. Jpn. Soc. Hortic. Sci. 2005, 74:204-213.
33. Yap, I.V., Nelson, R.J., 1996. WinBoot: a program for performing bootstrap analysis of binary data to determine the confidence limits of UPGMA-based dendrograms. International Rice Research Institute, Manila, Philippines. IRRI Discussion Paper, Series 14. (15.02.2006). http://www.irri.org/science/software/winboot.asp.
34. Zhang J.F., Stewart J.M. Economical and rapid method for extracting cotton genomic DNA. J. Cotton Sci. 2000, 4:193-201.
35. Zhebentyayeva T.N., Swire-Clark G., Georgi L.L., Garay L., Jung S., Forrest S., Blenda A.V., Blackmon B., Mook J., Horn R., Howad W., Arús P., Main D., Tomkins J.P., Sosinski B., Baird W.V., Reighard G.L., Abbott A.G. A framework physical map for peach, a model Rosaceae species. Tree Genet. Genomes 2008, 4:745-756.