Differentially expressed genes in skeletal muscle tissues from castrated Qinchuan cattle males compared with those from intact males

Livestock Science

Volumn 135, Issue 1, 2011, Pages 76-83

  Zhang, Y Y ^a   Zan, L S ^a,b   Wang, H B ^a,b   Qing, L ^a,b   Wu, K X ^c   Quan, S A ^a,b   Li, C Q ^a   Zhong, X ^a   Wang, C J ^d  

^a NORTHWEST A F UNIVERSITY   (China)

^b National Beef Cattle Improvement Centre   (China)

^c Qinghai Academy of Animal and Veterinary Science   (China)

^d Boao Biochip Co Ltd   (China)

Author keywords

Castration; Gene expression profile; Muscular tissues; Qinchuan cattle; Tenderness

Indexed keywords

BOS; BOVINAE;

EID: 78650179213     PISSN: 18711413     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.livsci.2010.06.070     Document Type: Article

References (49)

1. Affymetrix technical note: Performance and validation of the GeneChip human genome set. [ technotesmain.affx]. http://www.affymetrix.com/support/technical/.
2. Bai Q.F., McGillivray C., da Costa N., Dornan S., Evans G., Stear M.J., Chang K.C. Development of a porcine skeletal muscle cDNA microarray: analysis of differential transcript expression in phenotypically distinct muscles. BMC Genomics 2003, 4:1471-2164.
3. Boccard R.L., Naudé R.T., Cronje D.E., Smit M.C., Venter H.J., Rossouw E.J. The influence of age, sex and breed of cattle on their muscle characteristics. Meat Sci. 1979, 4:261-281.
4. Bourneuf E., Herault F., Chicault C., Carre W., Assaf S., Monnier A., Mottier S., Lagarrigue S., Douaire M., Mosser J., Diot C. Microarray analysis of differential gene expression in the liver of lean and fat chickens. Gene 2006, 372:162-170.
5. Carlin K.R.M., Huff-Lonergan E., Rowe L.J., Lonergan S.M. Effect of oxidation, pH, and ionic strength on calpastatin inhibition of μ- and m-calpain. J. Anim. Sci. 2006, 84:925-937.
6. Cassar-Malek I., Passelaigue F., Bernard C., Léger J., Hocquette J.F. Target genes of myostatin loss-of-function in muscles of late bovine fetuses. BMC Genomics 2007, 8:63.
7. Choi B.H., Ahn B.J., Kook K., Sun S.S., Myung K.H., Moon S.J., Kim J.H. Effects of feeding patterns and sexes on growth rate, carcass trait and grade in Korean native cattle. Asian Austral. J. Anim. 2002, 15:838-843.
8. Cottin P., Vidalenc P.L., Ducastaing A. Ca2+-dependent association between a Ca2+-activated neutral proteinase (CaANP) and its specific inhibitor. FEBS Lett. 1981, 136:221-224.
9. Dallas P.B., Gottardo N.G., Firth M.J., Beesley A.H., Hoffmann K., Terry P.A., Freitas J.R., Boag J.M., Cummings A.J., Kees U.R. Gene expression levels assessed by oligonucleotide microarray analysis and quantitative real-time RT-PCR-how well do they correlate?. BMC Genomics 2005, 6:59.
10. Debouck C., Goodfellow P.N. DNA microarrays in drug discovery and development. Nat. Genet. 1999, 21:48-50.
11. Destefanis G., Brugiapaglia A., Barge M.T., Lazzaroni C. Effect of castration on meat quality in Piemontese cattle. Meat Sci. 2003, 64:215-218.
12. Dietz H.C., Pyeritz R.E. Mutations in the human gene for fibrillin-1 (FBN1) in the marfan-syndrome and related disorders. Hum. Mol. Genet. 1995, 4:1799-1809.
13. Eisenberg D., Marcotte E.M., Xenarios I., Yeates T.O. Protein function in the post-genomic era. Nature 2000, 405:823-826.
14. Encle C., Gebhardt R. Inhibition of matrix metalloproteinase-2 and -9 activities by selected flavonoids. Planta Med. 2004, 70:1006-1008.
15. Geesink G.H., Koohmaraie M. Effect of calpastatin on degradation of myofibrillar proteins by μ-calpain under postmortem conditions. J. Anim. Sci. 1999, 77:2685-2692.
16. Guttmann R.P., Elce J.S., Bell P.D., Isbell J.C., Johnson G. Oxidation inhibits substrate proteolysis by calpain I but not autolysis. J. Biol. Chem. 1997, 272:2005-2012.
17. Hamalainen N., Pette D. Patterns of myosin isoforms in mammalian skeletal-muscle fibers. Microsc. Res. Techniq. 1995, 30:381-389.
18. Hocqette J.F., Lehnert S., Barendse W., Cassar-Malek I., Picard B. Recent advances in cattle functional genomics and their application to beef quality. Animal 2007, 1:159-173.
19. Hopkins D.L., Thompson J.M. Inhibition of protease activity. Part 1. The effect on tenderness and indicators of proteolysis in ovine muscle. Meat Sci. 2001, 59:175-185.
20. Jurie C., Cassar-Malek I., Bonnet M., Leroux C., Bauchart D., Boulesteix P., Pethick D.W., Hocquette J.F. J. Anim. Sci. 2007, 85:2660-2669.
21. Killinger K.M., Calkins C.R., Urnberger W.J., Feuz D.M., Eskridge K.M. Consumer sensory acceptance and value for beef steaks of similar tenderness, but differing in marbling level. J. Anim. Sci. 2004, 82:3294-3301.
22. Killinger K.M., Calkins C.R., Urnberger W.J., Feuz D.M., Eskridge K.M. A comparison of consumer sensory acceptance and value of domestic beef steaks and steaks from a branded, Argentine beef program. J. Anim. Sci. 2004, 82:3302-3307.
23. Koohmaraie M. Biochemical factors regulating the toughening and tenderization processes of meat. Meat Sci. 1996, 43:S193-S201.
24. Koohmaraie M., Geesink G.H. Contribution of postmortem muscle biochemistry to the delivery of consistent meat quality with particular focus on the calpain system. Meat Sci. 2006, 74:34-43.
25. Koohmaraie M., Shackelford S.D., Muggli-Cockett N.E., Stone R.T. Effect of the μ-adrenergic agonist L644, 969 on muscle growth, endogenous proteinase activities, and postmortem proteolysis in wether lambs. J. Anim. Sci. 1991, 69:4823-4835.
26. Lazzaroni C., Biagini D. Effect of pre- and post-pubertal castration on Piemontese male cattle. II: carcass measures and meat yield. Meat Sci. 2008, 422-448.
27. Lepetit J. A theoretical approach of the relationships between collagen content, collagen cross-links and meat tenderness. Meat Sci. 2007, 76:147-159.
28. Lepetit J. Collagen contribution to meat toughness: theoretical aspects. Meat Sci. 2008, 80:960-967.
29. Li C., Wong W.H. Model-based analysis of ligonucleotide arrays: expression index computation and outlier detection. Proc Natl Acad Sci. USA 2001, 98:31-36.
30. Li C., Wong W.H. Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application. Genome Biol. 2001, 2. research 0032.1-0032.11.
31. Macbeath J., Shackleton D.R., Hulmes D. Tyrosine-rich acidic matrix protein (TRAMP) accelerates collagen fibril formation in-vitro. J. Biol. Chem. 1993, 268:19826-19832.
32. Matyas G., Alonso S., Patrignani A., Marti M., Arnold E., Magyar I., Henggeler C., Carrel T., Steinmann B., Berger W. Large genomic fibrillin-1 (FBN1) gene deletions provide evidence for true haploinsufficiency in Marfan syndrome. Hum. Genet. 2007, 122:23-32.
33. Mccormick R.J. The flexibility of the collagen compartment of muscle. Meat Sci. 1994, 36:79-91.
34. Mutch D.M., Berger A., Mansourian R., Rytz A., Roberts M.A. The limit fold change model: a practical approach for selecting differentially expressed genes from microarray data. BMC Bioinform. 2002, 3:17.
35. Oberhauser A.F., Marszalek P.E., Erickson H.P., Fernandez J.M. The molecular elasticity of the extracellular matrix protein tenascin. Nature 1998, 393:181-185.
36. Panjono, Kang S.M., Lee I.S., Lee S.K. Carcass characteristics of Hanwoo (Korean cattle) from different sex conditions, raising altitudes and slaughter seasons. Livest. Sci. 2009, 123:283-287.
37. Peachey B.M., Purchas R.W., Duizer L.M. Relationships between sensory and objective measures of meat tenderness of beef m. Longissimus thoracis from bulls and steers. Meat Sci. 2002, 60:211-218.
38. Prasad N., Topping R.S., Decker S.J. Src family tyrosine kinases regulate adhesion-dependent tyrosine phosphorylation of 5′-inositol phosphatase SHIP2 during cell attachment and spreading on collagen I. J. Cell Sci. 2002, 115:3807-3815.
39. Purchas R.W., Burnham D.L., Morris S.T. Effects of growth potential and growth path on tenderness of beef Longissimus muscle from bulls and steers. J. Anim. Sci. 2002, 80:3211-3221.
40. Riley R.R., Savell J.W., Murphey C.E., Smith G.C., Stiffler D.M., Cross H.R. Palatability of beef from steer and young bull carcasses as influenced by electrical stimulation, subcutaneous fat thickness and marbling. J. Anim. Sci. 1983, 56:592-597.
41. Roeber D.L., Gill R.K., DiCostanzo A. Meat quality responses to feeding distiller's grains to finishing Holstein steers. J. Anim. Sci. 2005, 83:2455-2460.
42. Rosso F., Giordano A., Barbarisi M., Barbarisi A. From cell-ECM interactions to tissue engineering. J. Cell. Physiol. 2004, 199:174-180.
43. Schiaffino S., Reggiani C. Myosin isoforms in mammalian skeletal-muscle. J. Appl. Physiol. 1994, 77:493-501.
44. Schiaffino S., Reggiani C. Molecular diversity of myofibrillar proteins: gene regulation and functional significance. Physiol. Rev. 1996, 76:371-423.
45. Seideman S.C., Cross H.R., Crouse J.D. Carcass characteristics, sensory properties and mineral content of meat from bulls and steers. J. Food Qual. 1989, 11:497-507.
46. Van Loon L.J.C., Goodpaster B.H. Increased intramuscular lipid storage in the insulin-resistant and endurance-trained state. Pflug. Arch. Eur. J. Phys. 2006, 451:606-616.
47. Xiong Y.L.L. Myofibrillar protein from different muscle-fiber types-implications of biochemical and functional-properties in meat processing. Crit. Rev. Food Sci. 1994, 34:293-320.
48. Yuen T., Wurmbach E., Pfeffer R.L., Ebersole B.J., Sealfon S.C. Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays. Nucleic Acids Res. 2002, 30:e48.
49. Zhou Guanghong, Xu Xinglian Meat Sci 1999, China Agricultural Sci-Tech Press, Peking, (In Chinese).