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Volumn 75, Issue 1, 2011, Pages 20-28

A Robust multifactor dimensionality reduction method for detecting gene-gene interactions with application to the genetic analysis of bladder cancer susceptibility

Author keywords

Data mining; Epistasis; Machine learning

Indexed keywords

ARTICLE; BLADDER CANCER; CANCER GENETICS; CANCER SUSCEPTIBILITY; FISHER EXACT TEST; GENE INTERACTION; GENETIC ANALYSIS; GENETIC MODEL; GENETIC SUSCEPTIBILITY; GENOTYPE; PRIORITY JOURNAL; ROBUST MULTIFACTOR DIMENSIONALITY REDUCTION METHOD; SIMULATION; SINGLE NUCLEOTIDE POLYMORPHISM; STATISTICAL MODEL; UNITED STATES;

EID: 78650115977     PISSN: 00034800     EISSN: 14691809     Source Type: Journal    
DOI: 10.1111/j.1469-1809.2010.00624.x     Document Type: Article
Times cited : (57)

References (26)
  • 1
    • 33646187199 scopus 로고    scopus 로고
    • Concordance of multiple analytical approaches demonstrates a complex relationship between DNA repair gene SNPs, smoking, and bladder cancer susceptibility
    • Andrew, A. S., Nelson, H. N., Kelsey, K. T., Moore, J. H., Meng, A., Casella, D. P., Tosterson, T. D., Schned, A. R. & Karagas, M. R. (2006) Concordance of multiple analytical approaches demonstrates a complex relationship between DNA repair gene SNPs, smoking, and bladder cancer susceptibility. Carcinogenesis 27, 1030-1037.
    • (2006) Carcinogenesis , vol.27 , pp. 1030-1037
    • Andrew, A.S.1    Nelson, H.N.2    Kelsey, K.T.3    Moore, J.H.4    Meng, A.5    Casella, D.P.6    Tosterson, T.D.7    Schned, A.R.8    Karagas, M.R.9
  • 2
    • 33748675883 scopus 로고    scopus 로고
    • Parallel multifactor dimensionality reduction: A tool for the large-scale analysis of gene-gene interactions
    • Bush, W. S., Dudek, S. M. & Ritchie, M. D. (2006) Parallel multifactor dimensionality reduction: A tool for the large-scale analysis of gene-gene interactions. Bioinformatics 22, 2173-2174.
    • (2006) Bioinformatics , vol.22 , pp. 2173-2174
    • Bush, W.S.1    Dudek, S.M.2    Ritchie, M.D.3
  • 3
    • 44949257101 scopus 로고    scopus 로고
    • Alternative contingency table measures improve the power and detection of multifactor dimensionality reduction
    • Bush, W. S., Edwards, T. L., Dudek, S. M., McKinney, B. A. & Ritchie, M. D. (2008) Alternative contingency table measures improve the power and detection of multifactor dimensionality reduction. BMC Bioinformatics 9, 238.
    • (2008) BMC Bioinformatics , vol.9 , pp. 238
    • Bush, W.S.1    Edwards, T.L.2    Dudek, S.M.3    McKinney, B.A.4    Ritchie, M.D.5
  • 4
    • 78650078823 scopus 로고    scopus 로고
    • MB-MDR: Model-based multifactor dimensionality reduction for detecting interactions in high-dimensional genomic data., Technical report
    • Calle, M. L., Urrea, V., Malats, N. & van Steen, K. (2008) MB-MDR: Model-based multifactor dimensionality reduction for detecting interactions in high-dimensional genomic data. Technical report .
    • (2008)
    • Calle, M.L.1    Urrea, V.2    Malats, N.3    van Steen, K.4
  • 5
    • 33845903040 scopus 로고    scopus 로고
    • Odds ratio based multifactor-dimensionality reduction method for detecting gene-gene interactions
    • Chung, Y., Lee, S. Y., Elston, R. C. & Park, T. (2007) Odds ratio based multifactor-dimensionality reduction method for detecting gene-gene interactions. Bioinformatics 23, 71-76.
    • (2007) Bioinformatics , vol.23 , pp. 71-76
    • Chung, Y.1    Lee, S.Y.2    Elston, R.C.3    Park, T.4
  • 6
    • 67349166946 scopus 로고    scopus 로고
    • Detecting gene-gene interactions that underlie human diseases
    • Cordell, H. J. (2009) Detecting gene-gene interactions that underlie human diseases. Nat Rev Genet 10, 392-404.
    • (2009) Nat Rev Genet , vol.10 , pp. 392-404
    • Cordell, H.J.1
  • 8
    • 0037433052 scopus 로고    scopus 로고
    • Multifactor dimensionality reduction software for detecting gene-gene and gene-environment interactions
    • Hahn, L. W., Ritchie, M. D. & Moore, J. H. (2003) Multifactor dimensionality reduction software for detecting gene-gene and gene-environment interactions. Bioinformatics 19, 376-382.
    • (2003) Bioinformatics , vol.19 , pp. 376-382
    • Hahn, L.W.1    Ritchie, M.D.2    Moore, J.H.3
  • 9
    • 8444240028 scopus 로고    scopus 로고
    • Ideal discrimination of discrete clinical endpoints using multilocus genotypes
    • Hahn, L. W. & Moore, J. H. (2004) Ideal discrimination of discrete clinical endpoints using multilocus genotypes. In Silico Biol 4, 183-194.
    • (2004) In Silico Biol , vol.4 , pp. 183-194
    • Hahn, L.W.1    Moore, J.H.2
  • 10
    • 35748972938 scopus 로고    scopus 로고
    • Log-linear model-based multifactor dimensionality reduction method to detect gene-gene interactions
    • Lee, S. Y. Chung, Y., Elston, R. C., Kim, Y. & Park, T. (2007) Log-linear model-based multifactor dimensionality reduction method to detect gene-gene interactions. Bioinformatics 23, 2589-2595.
    • (2007) Bioinformatics , vol.23 , pp. 2589-2595
    • Lee, S.Y.1    Chung, Y.2    Elston, R.C.3    Kim, Y.4    Park, T.5
  • 11
    • 0033940280 scopus 로고    scopus 로고
    • A complete enumeration and classification of two-locus disease models
    • Li, W. & Reich, J. (2000) A complete enumeration and classification of two-locus disease models. Hum Hered 50, 334-349.
    • (2000) Hum Hered , vol.50 , pp. 334-349
    • Li, W.1    Reich, J.2
  • 12
    • 34250821108 scopus 로고    scopus 로고
    • A generalized combinatorial approach for detecting gene by gene and gene by environment interactions with application to nicotine dependence
    • Lou, X. Y., Chen, G. B., Yan, L., Ma, J. Z., Zhu, J., Elston, R. C. & Li, M. D. (2007) A generalized combinatorial approach for detecting gene by gene and gene by environment interactions with application to nicotine dependence. Am J Hum Genet 80, 1125-1137.
    • (2007) Am J Hum Genet , vol.80 , pp. 1125-1137
    • Lou, X.Y.1    Chen, G.B.2    Yan, L.3    Ma, J.Z.4    Zhu, J.5    Elston, R.C.6    Li, M.D.7
  • 13
    • 36749015065 scopus 로고    scopus 로고
    • Multifactor dimensionality reduction-phenomics: A novel method to capture genetic heterogeneity with use of phenotypic variables
    • Mei, H., Cuccaro, M. L. & Martin, E. R. (2007) Multifactor dimensionality reduction-phenomics: A novel method to capture genetic heterogeneity with use of phenotypic variables. Am J Hum Genet 81, 1251-1261.
    • (2007) Am J Hum Genet , vol.81 , pp. 1251-1261
    • Mei, H.1    Cuccaro, M.L.2    Martin, E.R.3
  • 14
    • 0000942050 scopus 로고
    • A theory and methodology of inductive learning
    • Michalski, R.S. (1983) A theory and methodology of inductive learning. Artif Intel 20, 111-161.
    • (1983) Artif Intel , vol.20 , pp. 111-161
    • Michalski, R.S.1
  • 15
    • 8444221177 scopus 로고    scopus 로고
    • Computational analysis of gene-gene interactions in common human diseases using multifactor dimensionality reduction
    • Moore, J. H. (2004) Computational analysis of gene-gene interactions in common human diseases using multifactor dimensionality reduction. Expert Rev Mol Diagn 4, 795-803.
    • (2004) Expert Rev Mol Diagn , vol.4 , pp. 795-803
    • Moore, J.H.1
  • 16
    • 33745599582 scopus 로고    scopus 로고
    • A flexible computational framework for detecting, characterizing, and interpreting statistical patterns of epistasis in genetic studies of human disease susceptibility
    • Moore, J. H., Gilbert, J. C., Tsai, C.T., Chiang, F. T., Holden, W., Barney, N. & White, B. C. (2006) A flexible computational framework for detecting, characterizing, and interpreting statistical patterns of epistasis in genetic studies of human disease susceptibility. J Theor Biol 241, 252-261.
    • (2006) J Theor Biol , vol.241 , pp. 252-261
    • Moore, J.H.1    Gilbert, J.C.2    Tsai, C.T.3    Chiang, F.T.4    Holden, W.5    Barney, N.6    White, B.C.7
  • 18
    • 69449103972 scopus 로고    scopus 로고
    • Epistasis and its implications for personal genetics
    • Moore, J. H. & Williams, S. M. (2009) Epistasis and its implications for personal genetics. Am J Hum Genet 85, 309-320.
    • (2009) Am J Hum Genet , vol.85 , pp. 309-320
    • Moore, J.H.1    Williams, S.M.2
  • 19
    • 77949497074 scopus 로고    scopus 로고
    • Bioinformatics challenges for genome-wide association studies
    • Moore, J. H., Asselbergs, F. W. & Williams, S. M. (2010) Bioinformatics challenges for genome-wide association studies. Bioinformatics 26, 445-455.
    • (2010) Bioinformatics , vol.26 , pp. 445-455
    • Moore, J.H.1    Asselbergs, F.W.2    Williams, S.M.3
  • 20
  • 21
    • 59549104250 scopus 로고    scopus 로고
    • New evaluation measures for multifactor dimensionality reduction classifiers in gene-gene interaction analysis
    • Namkung, J., Kim, K., Yi, S., Chung, W., Kwon, M. & Park, T. (2009) New evaluation measures for multifactor dimensionality reduction classifiers in gene-gene interaction analysis. Bioinformatics 25, 338-345.
    • (2009) Bioinformatics , vol.25 , pp. 338-345
    • Namkung, J.1    Kim, K.2    Yi, S.3    Chung, W.4    Kwon, M.5    Park, T.6
  • 23
    • 0034973569 scopus 로고    scopus 로고
    • Multifactor dimensionality reduction reveals high-order interactions among estrogen metabolism genes in sporadic breast cancer
    • Ritchie, M. D., Hahn, L. W., Roodi, N., Bailey, L. R., Dupont, W. D., Parl, F. F., Moore, J. H. (2001) Multifactor dimensionality reduction reveals high-order interactions among estrogen metabolism genes in sporadic breast cancer. Am J Hum Genet 69, 138-147.
    • (2001) Am J Hum Genet , vol.69 , pp. 138-147
    • Ritchie, M.D.1    Hahn, L.W.2    Roodi, N.3    Bailey, L.R.4    Dupont, W.D.5    Parl, F.F.6    Moore, J.H.7
  • 24
    • 0037310257 scopus 로고    scopus 로고
    • Power of multifactor dimensionality reduction for detecting gene-gene interactions in the presence of genotyping error, missing data, phenocopy, and genetic heterogeneity
    • Ritchie, M. D., Hahn, L. W. & Moore, J. H. (2003) Power of multifactor dimensionality reduction for detecting gene-gene interactions in the presence of genotyping error, missing data, phenocopy, and genetic heterogeneity. Genet Epidemiol 24, 150-157.
    • (2003) Genet Epidemiol , vol.24 , pp. 150-157
    • Ritchie, M.D.1    Hahn, L.W.2    Moore, J.H.3
  • 25
    • 69449099445 scopus 로고    scopus 로고
    • Accelerating epistasis analysis in human genetics with consumer graphics hardware
    • Sinnott-Armstrong, N. A., Greene C. S., Cancare, F. & Moore, J. H. (2009) Accelerating epistasis analysis in human genetics with consumer graphics hardware. BMC Res Notes 2, 149.
    • (2009) BMC Res Notes , vol.2 , pp. 149
    • Sinnott-Armstrong, N.A.1    Greene, C.S.2    Cancare, F.3    Moore, J.H.4
  • 26
    • 34247338434 scopus 로고    scopus 로고
    • A balanced accuracy metric for epistasis modeling in imbalanced datasets using multifactor dimensionality reduction
    • Velez, D. R., White, B. C., Motsinger, A. A., Bush, W. S., Ritchie, M. D., Williams, S. M. & Moore, J. H. (2007) A balanced accuracy metric for epistasis modeling in imbalanced datasets using multifactor dimensionality reduction. Genet Epidemiol 31, 306-315.
    • (2007) Genet Epidemiol , vol.31 , pp. 306-315
    • Velez, D.R.1    White, B.C.2    Motsinger, A.A.3    Bush, W.S.4    Ritchie, M.D.5    Williams, S.M.6    Moore, J.H.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.