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Volumn 17, Issue 9, 2010, Pages 1129-1135

Specificity of transporter associated with antigen processing protein as revealed by feature selection method

Author keywords

Feature prioritization; Neighborhood rough set; Peptide; Specificity; SVM; TAP

Indexed keywords

ABC TRANSPORTER; EPITOPE; PEPTIDE; TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING (TAP);

EID: 78650115567     PISSN: 09298665     EISSN: None     Source Type: Journal    
DOI: 10.2174/092986610791760469     Document Type: Article
Times cited : (3)

References (29)
  • 2
    • 0025772103 scopus 로고
    • Positive and negative selection of the ab T cell repertoire in vivo
    • Von Boehmer, H. Positive and negative selection of the ab T cell repertoire in vivo. Curr. Opin. Immunol., 1991, 3, 210-215.
    • (1991) Curr. Opin. Immunol. , vol.3 , pp. 210-215
    • Von Boehmer, H.1
  • 3
    • 17644393143 scopus 로고    scopus 로고
    • + T cells in vivo: The key to rational vaccine design
    • DOI 10.1146/annurev.immunol.23.021704.115702
    • Yewdell, J.W.; Haeryfar S.M. Understanding presentation of viral antigens to CD81 T cells in vivo: the key to rational vaccine design. Annu. Rev. Immunol., 2005, 26, 651-682. (Pubitemid 40563182)
    • (2005) Annual Review of Immunology , vol.23 , pp. 651-682
    • Yewdell, J.W.1    Haeryfar, S.M.M.2
  • 4
    • 0031895637 scopus 로고    scopus 로고
    • Mechanisms of MHC class I-restricted antigen processing
    • DOI 10.1146/annurev.immunol.16.1.323
    • Pamer, E.; Cresswell, P. Mechanisms of MHC class I-restricted antigen processing. Annu. Rev. Immunol., 1998, 16, 323-358. (Pubitemid 28183368)
    • (1998) Annual Review of Immunology , vol.16 , pp. 323-358
    • Pamer, E.1    Cresswell, P.2
  • 5
    • 0030268198 scopus 로고    scopus 로고
    • Binding and transport of melanoma-specific antigenic peptides by the transporter associated with antigen processing
    • DOI 10.1016/S0161-5890(96)00082-X, PII S016158909600082X
    • Chang, S.A.; Lacaille, V.G.; Guttoh, D.S.; Androlewicz, M.J. Binding and transport of melanoma-specific antigenic peptides by the transporter associated with antigen processing. Mol. Immunol., 1996, 33(15), 1165-1169. (Pubitemid 27105324)
    • (1996) Molecular Immunology , vol.33 , Issue.15 , pp. 1165-1169
    • Chang, S.A.1    Lacaille, V.G.2    Guttoh, D.S.3    Androlewicz, M.J.4
  • 6
    • 0027239749 scopus 로고
    • Selective and ATP-dependent translocation of peptides by the MHC-encoded transporter
    • Neefjes, J.J.; Momburg, F.; Hammerling, G.J. Selective and Atp- Dependent Translocation of Peptides by the Mhc-Encoded Transporter. Science, 1993, 261(5122), 769-771. (Pubitemid 23278394)
    • (1993) Science , vol.261 , Issue.5122 , pp. 769-771
    • Neefjes, J.J.1    Momburg, F.2    Hammerling, G.J.3
  • 7
    • 0027715856 scopus 로고
    • Peptide translocation by variants of the transporter associated with antigen processing
    • Heemels, M.T.; Schumacher, T.N.; Wonigeit, K.; Ploegh, H.L. Peptide translocation by variants of the transporter associated with antigen processing. Science, 1993, 262(5142), 2059-2063. (Pubitemid 24041890)
    • (1993) Science , vol.262 , Issue.5142 , pp. 2059-2063
    • Heemels, M.-T.1    Schumacher, T.N.M.2    Wonigeit, K.3    Ploegh, H.L.4
  • 9
    • 0033372442 scopus 로고    scopus 로고
    • The transporter associated with antigen processing TAP: Structure and function
    • DOI 10.1016/S0014-5793(99)01676-2, PII S0014579399016762
    • Lankat-Buttgereit, B.; Tampe, R. The transporter associated with antigen processing TAP: structure and function. FEBS Lett., 1999, 464(3), 108-112. (Pubitemid 30017924)
    • (1999) FEBS Letters , vol.464 , Issue.3 , pp. 108-112
    • Lankat-Buttgereit, B.1    Tampe, R.2
  • 10
    • 0030699159 scopus 로고    scopus 로고
    • Peptide binding and photo-crosslinking to detergent solubilized and to reconstituted transporter associated with antigen processing (TAP)
    • DOI 10.1016/S0014-5793(97)01222-2, PII S0014579397012222
    • Uebel, S.; Plantinga, T.; Weber, P.J.; Beck-Sickinger, A.G.; Tampe, R. Peptide binding and photo-cross linking to detergent solubilized and to reconstituted transporter associated with antigen processing (TAP). FEBS Lett., 1997, 416(3), 359-363. (Pubitemid 27475397)
    • (1997) FEBS Letters , vol.416 , Issue.3 , pp. 359-363
    • Uebel, S.1    Plantinga, T.2    Weber, P.J.A.3    Beck-Sickinger, A.G.4    Tampe, R.5
  • 11
    • 0028501327 scopus 로고
    • A sequential model for peptide binding and transport by the transporters associated with antigen processing
    • van Endert, P.M.; Tampe, R.; Meyer, T.H.; Tisch, R.; Bach, J.F.; McDevitt, H.O. A sequential model for peptide binding and transport by the transporters associated with antigen processing. Immunity, 1994, 1(6), 491-500.
    • (1994) Immunity , vol.1 , Issue.6 , pp. 491-500
    • Van Endert, P.M.1    Tampe, R.2    Meyer, T.H.3    Tisch, R.4    Bach, J.F.5    McDevitt, H.O.6
  • 12
    • 0041589474 scopus 로고    scopus 로고
    • Identifying MHC class I epitopes by predicting the TAP transport efficiency of epitope precursors
    • Peters, B.; Bulik, S.; Tampe, R.; Van Endert, P.M.; Holzhutter, H.G. Identifying MHC class I epitopes by predicting the TAP transport efficiency of epitope precursors. J Immunol., 2003, 171, 1741-1749. (Pubitemid 36966457)
    • (2003) Journal of Immunology , vol.171 , Issue.4 , pp. 1741-1749
    • Peters, B.1    Bulik, S.2    Tampe, R.3    Van Endert, P.M.4    Holzhutter, H.-G.5
  • 16
    • 36148978191 scopus 로고    scopus 로고
    • Neighborhood classifiers
    • Hu, Q.H.; Yu, D.R.; Me, Z. Neighborhood classifiers. Expert Syst. Appl., 2008, 34(2), 866-876.
    • (2008) Expert Syst. Appl. , vol.34 , Issue.2 , pp. 866-876
    • Hu, Q.H.1    Yu, D.R.2    Me, Z.3
  • 17
    • 0031145399 scopus 로고    scopus 로고
    • Rough set approach to knowledge-based decision support
    • PII S0377221796003827
    • Pawlak, Z. Rough set approach to knowledge-based decision support, Europ. J. Operat. Res., 1997, 99(1), 48-57. (Pubitemid 127443690)
    • (1997) European Journal of Operational Research , vol.99 , Issue.1 , pp. 48-57
    • Pawlak, Z.1
  • 19
    • 9644262464 scopus 로고    scopus 로고
    • Fuzzy-rough data reduction with ant colony optimization
    • Jensen, R.; Shen, Q. Fuzzy-rough data reduction with ant colony optimization, Fuzzy Sets Syst., 2005, 149(2005), 5-20.
    • (2005) Fuzzy Sets Syst. , vol.149 , Issue.2005 , pp. 5-20
    • Jensen, R.1    Shen, Q.2
  • 20
    • 77950017573 scopus 로고    scopus 로고
    • Sequence-based prediction of protein- protein interactions by means of rotation forest and autocorrelation descriptor
    • Xia, J.F.; Han, K.; Huang, D.S. Sequence-based prediction of protein- protein interactions by means of rotation forest and autocorrelation descriptor. Protein Pept. Lett., 2010, 17(1), 137-145.
    • (2010) Protein Pept. Lett. , vol.17 , Issue.1 , pp. 137-145
    • Xia, J.F.1    Han, K.2    Huang, D.S.3
  • 21
    • 33750619846 scopus 로고    scopus 로고
    • Inferring protein-protein interacting sites using residue conservation and evolutionary information
    • DOI 10.2174/092986606778777498
    • Wang, B.; Wong, H.S.; Huang, D.S. Inferring protein-protein interacting sites using residue conservation and evolutionary information. Protein Pept. Lett., 2006, 13(10), 999-1005. (Pubitemid 44690897)
    • (2006) Protein and Peptide Letters , vol.13 , Issue.10 , pp. 999-1005
    • Wang, B.1    Wong, H.S.2    Huang, D.-S.3
  • 22
    • 77649237177 scopus 로고    scopus 로고
    • Tumor classification by combining PNN classifier ensemble with neighborhood rough set based gene reduction
    • Wang, S.L., Li, X.L., Zhang, S.W. Gui, J., Huang, D.S. Tumor classification by combining PNN classifier ensemble with neighborhood rough set based gene reduction. Comput. Biol. Med., 2010, 40(2), 179-189.
    • (2010) Comput. Biol. Med. , vol.40 , Issue.2 , pp. 179-189
    • Wang, S.L.1    Li, X.L.2    Zhang S.W. Gui, J.3    Huang, D.S.4
  • 23
    • 58149512313 scopus 로고    scopus 로고
    • GalNAc-transferase specificity prediction based on feature selection method
    • Lu, L.; Niu, B.; Zhao, J.; Liu, L.; Lu, W.C.; Liu, X.J.; Li, Y.X.; Cai, Y.D. GalNAc-transferase specificity prediction based on feature selection method. Peptides, 2009, 30(2009), 359-364.
    • (2009) Peptides , vol.30 , Issue.2009 , pp. 359-364
    • Lu, L.1    Niu, B.2    Zhao, J.3    Liu, L.4    Lu, W.C.5    Liu, X.J.6    Li, Y.X.7    Cai, Y.D.8
  • 24
    • 0343621535 scopus 로고    scopus 로고
    • AAindex: Amino acid index database
    • Kawashima, S.; Kanehisa, M. AAindex: amino acid index database. Nucleic Acids Res., 2000, 28(1), 374. (Pubitemid 30047811)
    • (2000) Nucleic Acids Research , vol.28 , Issue.1 , pp. 374
    • Kawashima, S.1    Kanehisa, M.2
  • 25
    • 0032892577 scopus 로고    scopus 로고
    • AAindex: Amino acid index database
    • DOI 10.1093/nar/27.1.368
    • Kawashima, S.; Ogata, H.; Kanehisa, M. AAindex: Amino Acid Index database. Nucleic Acids Res., 1999, 27(1), 368-369. (Pubitemid 29209488)
    • (1999) Nucleic Acids Research , vol.27 , Issue.1 , pp. 368-369
    • Kawashima, S.1    Ogata, H.2    Kanehisa, M.3
  • 27
    • 38049150954 scopus 로고    scopus 로고
    • Amino acid biophysical properties in the statistical prediction of peptide-MHC class I binding
    • Ray, S.; Kepler, T.B. Amino acid biophysical properties in the statistical prediction of peptide-MHC class I binding. Immunome Res., 2007, 3(1).
    • (2007) Immunome Res. , vol.3 , Issue.1
    • Ray, S.1    Kepler, T.B.2
  • 29
    • 9144231300 scopus 로고    scopus 로고
    • Transporter associated with antigen processing preselection of peptides binding to the MHC: A bioinformatic evaluation
    • Doytchinova, I.; Hemsley, S.; Flower, D.R. Transporter associated with antigen processing preselection of peptides binding to the MHC: a bioinformatic evaluation. J. Immunol., 2004, 173, 6813-6819. (Pubitemid 39541067)
    • (2004) Journal of Immunology , vol.173 , Issue.11 , pp. 6813-6819
    • Doytchinova, I.1    Hemsley, S.2    Flower, D.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.