Proteomic analysis of the outer membrane of Protochlamydia amoebophila elementary bodies

Proteomics

Volumn 10, Issue 24, 2010, Pages 4363-4376

  Heinz, Eva ^a,b   Pichler, Peter ^a   Heinz, Christian ^a   Op Den Camp, Huub J M ^c   Toenshoff, Elena Rebecca ^a   Ammerer, Gustav ^a   Mechtler, Karl ^d   Wagner, Michael ^a   Horn, Matthias ^a  

^a UNIVERSITY OF VIENNA   (Austria)

^b NEWCASTLE UNIVERSITY   (United Kingdom)

^c RADBOUD UNIVERSITY NIJMEGEN   (Netherlands)

^d RESEARCH INSTITUTE OF MOLECULAR PATHOLOGY   (Austria)

Author keywords

Chlamydia; Microbiology; Outer membrane protein; Porin

Indexed keywords

OUTER MEMBRANE PROTEIN;

ACANTHAMOEBA; ARTICLE; CHLAMYDIA; COMPUTER MODEL; ELECTROSPRAY MASS SPECTROMETRY; EXPERIMENTAL STUDY; GEL ELECTROPHORESIS; LIQUID CHROMATOGRAPHY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN LOCALIZATION; PROTOCHLAMYDIA AMOEBOPHILA;

ACANTHAMOEBA; AMINO ACID SEQUENCE; ANIMALS; BACTERIAL OUTER MEMBRANE PROTEINS; CHLAMYDIALES; LIFE CYCLE STAGES; MOLECULAR SEQUENCE DATA; PROTEOME;

ACANTHAMOEBA; ANIMALIA; BACTERIA (MICROORGANISMS); CANDIDATUS PROTOCHLAMYDIA AMOEBOPHILA; CHLAMYDIA; CHLAMYDIACEAE; CHLAMYDIAE; EUKARYOTA;

EID: 78650073934     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201000302     Document Type: Article

References (50)

1. Kuo, C.-C., Horn, M., Stephens, R. S., in: Hedlund, B., Krieg, N. R., Ludwig, W., Paster, B. J., et al. (Eds.), Bergey's Manual of Systematic Bacteriology - The Planctomycetes, Spriochaetes, Fibrobacteres, Bacteriodetes and Fusobacteria, Springer, New York, NY 2008.
2. WHO, Priority eye diseases. 2008.
3. Mahony, J. B., Coombes, B. K., Chernesky, M. A., in: Murray, P. R., Baron, E. J., Pfaller, M. A., Tenover, F. C., Yolken, R. H. (Eds.), Manual of Clinical Microbiology, ASM Press, Washington, DC 2003, pp. 991-1004.
4. Mussa, F. F., Chai, H., Wang, X., Yao, Q. et al., Chlamydia pneumoniae and vascular disease: an update. J. Vasc. Surg. 2006, 43, 1301-1307.
5. Horn, M., Chlamydiae as symbionts in eukaryotes. Annu. Rev. Microbiol. 2008, 62, 113-131.
6. Abdelrahman, Y. M., Belland, R. J., The chlamydial developmental cycle. FEMS Microbiol. Rev. 2005, 29, 949-959.
7. Moulder, J. W., Interaction of chlamydiae and host cells in vitro. Microbiol. Rev. 1991, 55, 143-190.
8. Ward, M. E., The Chlamydial Developmental Cycle, CRC Press, Boca Raton, FL 1988.
9. Hybiske, K., Stephens, R. S., Mechanisms of host cell exit by the intracellular bacterium Chlamydia. Proc. Natl. Acad. Sci. USA 2007, 104, 11430-11435.
10. McCoy, A. J., Maurelli, A. T., Building the invisible wall: updating the chlamydial peptidoglycan anomaly. Trends Microbiol. 2006, 14, 70-77.
11. Hatch, T., Disulfide cross-linked envelope proteins: the functional equivalent of peptidoglycan in chlamydiae? J. Bacteriol. 1996, 178, 1-5.
12. Hatch, T. P., in: Stephens, R. S. (Ed.), Chlamydia, American Society for Microbiology, Washington, DC 1999, pp. 29-67.
13. Moelleken, K., Hegemann, J. H., The Chlamydia outer membrane protein OmcB is required for adhesion and exhibits biovar-specific differences in glycosaminoglycan binding. Mol. Microbiol. 2008, 67, 403-419.
14. Wuppermann, F. N., Molleken, K., Julien, M., Jantos, C. A., Hegemann, J. H., Chlamydia pneumoniae GroEL1 protein is cell surface associated and required for infection of HEp-2 cells. J. Bacteriol. 2008, 190, 3757-3767.
15. Caldwell, H. D., Kromhout, J., Schachter, J., Purification and partial characterization of the major outer membrane protein of Chlamydia trachomatis. Infect. Immun. 1981, 31, 1161-1176.
16. Swanson, A. F., Kuo, C. C., Binding of the glycan of the major outer membrane protein of Chlamydia trachomatis to HeLa cells. Infect. Immun. 1994, 62, 24-28.
17. Wyllie, S., Ashley, R. H., Longbottom, D., Herring, A. J., The major outer membrane protein of Chlamydia psittaci functions as a porin-like ion channel. Infect. Immun. 1998, 66, 5202-5207.
18. Grimwood, J., Stephens, R. S., Computational analysis of the polymorphic membrane protein superfamily of Chlamydia trachomatis and Chlamydia pneumoniae. Microb. Comp. Genomics 1999, 4, 187-201.
19. Longbottom, D., Russell, M., Dunbar, S. M., Jones, G. E., Herring, A. J., Molecular cloning and characterization of the genes coding for the highly immunogenic cluster of 90-kilodalton envelope proteins from the Chlamydia psittaci subtype that causes abortion in sheep. Infect. Immun. 1998, 66, 1317-1324.
20. Longbottom, D., Russell, M., Jones, G. E., Lainson, F. A., Herring, A. J., Identification of a multigene family coding for the 90 kDa proteins of the ovine abortion subtype of Chlamydia psittaci. FEMS Microbiol. Lett. 1996, 142, 277-281.
21. Tan, C., Spitznagel, J. K., Shou, H.-z., Hsia, R.-c., Bavoil, P. M., in: Bavoil, P. M., Wyrick, P. B. (Eds.), Chlamydia: Genomics and Pathogenesis, Horizon Bioscience, Norfolk, VA 2006, pp. 195-218.
22. Wehrl, W., Brinkmann, V., Jungblut, P. R., Meyer, T. F., Szczepek, A. J., From the inside out-processing of the Chlamydial autotransporter PmpD and its role in bacterial adhesion and activation of human host cells. Mol. Microbiol. 2004, 51, 319-334.
23. Gomes, J. P., Nunes, A., Bruno, W. J., Borrego, M. J. et al., Polymorphisms in the nine polymorphic membrane proteins of Chlamydia trachomatis across all serovars: evidence for serovar Da recombination and correlation with tissue tropism. J. Bacteriol. 2006, 188, 275-286.
24. Stothard, D. R., Toth, G. A., Batteiger, B. E., Polymorphic membrane protein H has evolved in parallel with the three disease-causing groups of Chlamydia trachomatis. Infect. Immun. 2003, 71, 1200-1208.
25. Horn, M., Collingro, A., Schmitz-Esser, S., Beier, C. L. et al., Illuminating the evolutionary history of chlamydiae. Science 2004, 304, 728-730.
26. Collingro, A., Toenshoff, E. R., Taylor, M. W., Fritsche, T. R. et al., 'Candidatus Protochlamydia amoebophila', an endosymbiont of Acanthamoeba spp. Int. J. Syst. Evol. Microbiol. 2005, 55, 1863-1866.
27. Heinz, E., Tischler, P., Rattei, T., Myers, G. et al., Comprehensive in silico prediction and analysis of chlamydial outer membrane proteins reflects evolution and life style of the Chlamydiae. BMC Genomics 2009, 10, 634.
28. Bavoil, P., Ohlin, A., Schachter, J., Role of disulfide bonding in outer membrane structure and permeability in Chlamydia trachomatis. Infect. Immun. 1984, 44, 479-485.
29. Page, F. C., An Illustrated Key to Freshwater and Soil Amoebae, Freshwater Biological Association, Ambleside, UK 1976.
30. Farhoud, M. H., Wessels, H. J., Steenbakkers, P. J., Mattijssen, S. et al., Protein complexes in the archaeon Methanothermobacter thermautotrophicus analyzed by blue native/SDS-PAGE and mass spectrometry. Mol. Cell. Proteomics 2005, 4, 1653-1663.
31. Eichinger, L., Pachebat, J. A., Glockner, G., Rajandream, M. A. et al., The genome of the social amoeba Dictyostelium discoideum. Nature 2005, 435, 43-57.
32. Loftus, B., Anderson, I., Davies, R., Alsmark, U. C. et al., The genome of the protist parasite Entamoeba histolytica. Nature 2005, 433, 865-868.
33. O'Brien, E. A., Koski, L. B., Zhang, Y., Yang, L., et al. TBestDB: a taxonomically broad database of expressed sequence tags (ESTs). Nucleic Acids Res. 2007, 35, D445-D451.
34. Henning, K., Schares, G., Granzow, H., Polster, U. et al., Neospora caninum and Waddlia chondrophila strain 2032/99 in a septic stillborn calf. Vet. Microbiol. 2002, 85, 285-292.
35. Collingro, A., Poppert, S., Heinz, E., Schmitz-Esser, S. et al., Recovery of an environmental chlamydia strain from activated sludge by co-cultivation with Acanthamoeba sp. Microbiology 2005, 151, 301-309.
36. Kahane, S., Everett, K. D., Kimmel, N., Friedman, M. G., Simkania negevensis strain ZT: growth, antigenic and genome characteristics. Int. J. Syst. Bacteriol. 1999, 49, 815-820.
37. Baker, P. R., Medzihradszky, K. F., Chalkley, R. J., Improving software performance for peptide ETD data analysis by implementation of charge-state and sequence-dependent scoring. Mol. Cell. Proteomics 2010, 9, 1795-1803.
38. Perez Melgosa, M., Kuo, C. C., Campbell, L. A., Isolation and characterization of a gene encoding a Chlamydia pneumoniae 76-kilodalton protein containing a species-specific epitope. Infect. Immun. 1994, 62, 880-886.
39. Hong, H., Patel, D. R., Tamm, L. K., van den Berg, B., The outer membrane protein OmpW forms an eight-stranded beta-barrel with a hydrophobic channel. J. Biol. Chem. 2006, 281, 7568-7577.
40. Lasserre, J.-P., Beyne, E., Pyndiah, S., Lapaillerie, D. et al., A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Electrophoresis 2006, 27, 3306-3321.
41. Lee, E.-Y., Bang, J. Y., Park, G. W., Choi, D.-S. et al., Global proteomic profiling of native outer membrane vesicles derived from Escherichia coli. Proteomics 2007, 7, 3143-3153.
42. Washburn, M. P., Wolters, D., Yates3rd, J. R., Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotechnol. 2001, 19, 242-247.
43. Eichacker, L. A., Granvogl, B., Mirus, O., Muller, B. C. et al., Hiding behind hydrophobicity. Transmembrane segments in mass spectrometry. J. Biol. Chem. 2004, 279, 50915-50922.
44. Bagos, P. G., Liakopoulos, T. D., Spyropoulos, I. C., Hamodrakas, S. J., PRED-TMBB: a web server for predicting the topology of beta-barrel outer membrane proteins. Nucleic Acids Res. 2004, 32, W400-W404.
45. Bavoil, P., Stephens, R. S., Falkow, S., A soluble 60 kiloDalton antigen of Chlamydia spp. is a homologue of Escherichia coli GroEL. Mol. Microbiol. 1990, 4, 461-469.
46. Bukau, B., Reilly, P., McCarty, J., Walekr, G. C., Immunogold localization of the DnaK heat shock protein in Escherichia coli cells. J. Gen. Microbiol. 1993, 139, 95-99.
47. Henderson, I. R., Navarro-Garcia, F., Desvaux, M., Fernandez, R. C., Ala'Aldeen, D., Type V protein secretion pathway: the autotransporter story. Microbiol. Mol. Biol. Rev. 2004, 68, 692-744.
48. Nikaido, H., Molecular basis of bacterial outer membrane permeability revisited. Microbiol. Mol. Biol. Rev. 2003, 67, 593-656.
49. Finn, R. D., Mistry, J., Schuster-Bockler, B., Griffiths-Jones, S. et al., Pfam: clans, web tools and services. Nucleic Acids Res. 2006, 34, D247-D251.
50. Sun, G., Pal, S., Sarcon, A. K., Kim, S., et al., Structural and functional analyses of the major outer membrane protein of Chlamydia trachomatis. J. Bacteriol. 2007, 189, 6222-6235.