Proteome analysis of the leukocytes from the American alligator (Alligator mississippiensis) using mass spectrometry

Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics

Volumn 5, Issue 4, 2010, Pages 308-316

  Darville, Lancia N F ^a   Merchant, Mark E ^b   Hasan, Azeem ^a   Murray, Kermit K ^a  

^a LOUISIANA STATE UNIVERSITY   (United States)

^b MCNEESE STATE UNIVERSITY   (United States)

Author keywords

Alligator mississippiensis; De novo sequencing; Mass spectrometry; Proteome

Indexed keywords

ACTIN; BETA ACTIN; ENDONUCLEASE; MYOSIN; POLYUBIQUITIN; UBIQUITIN;

ALLIGATOR; AMINO ACID SEQUENCE; ANIMAL CELL; ARTICLE; CELL MOTILITY; LEUKOCYTE; LIQUID CHROMATOGRAPHY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHAGOCYTOSIS; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DATABASE; PROTEOMICS; TANDEM MASS SPECTROMETRY; TWO DIMENSIONAL GEL ELECTROPHORESIS;

ALLIGATOR; ALLIGATOR MISSISSIPPIENSIS; VERTEBRATA;

EID: 78649907706     PISSN: 1744117X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cbd.2010.09.001     Document Type: Article

References (64)

1. J.N. Adkins, S.M. Varnum, K.J. Auberry, R.J. Moore, N.H. Angell, R.D. Smith, D.L. Springer, and J.G. Pounds Toward a human blood serum proteome-analysis by multidimensional separation coupled with mass spectrometry Mol. Cell. Proteomics 1 2002 947 955
2. R. Aebersold, and D.R. Goodlett Mass spectrometry in proteomics Chem. Rev. 101 2001 269 295
3. R. Aebersold, and M. Mann Mass spectrometry-based proteomics Nature 422 2003 198 207
4. S.F. Altschul, W. Gish, W. Miller, E.W. Myers, and D.J. Lipman Basic Local Alignment Search Tool J. Mol. Biol. 215 1990 403 410
5. K. Ambatipudi, J. Old, M. Guilhaus, M. Raftery, L. Hinds, and E. Deane Proteomic analysis of the neutrophil proteins of the tammar wallaby (Macropus eugenii) Comp. Biochem. Physiol. D Genomics Proteomics 1 2006 283 291 (Pubitemid 44437816)
6. N.L. Anderson, M. Polanski, R. Pieper, T. Gatlin, R.S. Tirumalai, T.P. Conrads, T.D. Veenstra, J.N. Adkins, J.G. Pounds, R. Fagan, and A. Lobley The human plasma proteome-a nonredundant list developed by combination of four separate sources Mol. Cell. Proteomics 3 2004 311 326
7. G. Beck, and G.S. Habicht Immunity and the invertebrates-the fabulously complex immune systems of humans and other mammals evolved over hundreds of millions of years-in sometimes surprising ways Sci. Am. 275 1996 60
8. M.S. Boguski, and F. McCormick Proteins regulating Ras and its relatives Nature 366 1993 643 654
9. C.G. Bonnemann, T.G. Thompson, P.F.M. van der Ven, H.H. Goebel, I. Warlo, B. Vollmers, J. Reimann, J. Herms, M. Gautel, F. Takada, A.H. Beggs, D.O. Furst, L.M. Kunkel, F. Hanefeld, and R. Schroder Filamin C accumulation is a strong but nonspecific immunohistochemical marker of core formation in muscle J. Neurol. Sci. 206 2003 71 78
10. J.P. Bradshaw Cationic antimicrobial peptides-issues for potential clinical use Biodrugs 17 2003 233 240
11. S. Bringans, S. Eriksen, T. Kendrick, P. Gopalakrishnakone, A. Livk, R. Lock, and R. Lipscombe Proteomic analysis of the venom of Heterometrus longimanus (Asian black scorpion) Proteomics 8 2008 1081 1096
12. D.R. Brown, M.F. Nogueira, T.R. Schoeb, K.A. Vliet, R.A. Bennett, G.W. Pye, and E.R. Jacobson Pathology of experimental mycoplasmosis in American alligators J. Wildl. Dis. 37 2001 671 679
13. B.A. Budnik, J.V. Olsen, T.A. Egorov, V.E. Anisimova, T.G. Galkina, A.K. Musolyamov, E.V. Grishin, and R.A. Zubarev De novo sequencing of antimicrobial peptides isolated from the venom glands of the wolf spider Lycosa singoriensis J. Mass Spectrom. 39 2004 193 201
14. K. Burridge, and J.R. Feramisco Non-muscle alpha-actinins are calcium-sensitive actin-binding proteins Nature 294 1981 565 567
15. M.J. Chalmers, C.L. Mackay, C.L. Hendrickson, S. Wittke, M. Walden, H. Mischak, D. Fliser, I. Just, and A.G. Marshall Combined top-down and bottom-up mass spectrometric approach to characterization of biomarkers for renal disease Anal. Chem. 77 2005 7163 7171
16. King C. Chan, D.A.L., Denise Hise, Carl F. Schaefer, Zhen Xiao, George M. Janini, Kenneth H. Buetow, Haleem J. Issaq, Timothy D. Veenstra, and Thomas P. Conrads Analysis of the human serum proteome Clin. Proteomics 1 2004 101 225
17. A. Ciechanover The ubiquitin-proteasome pathway: on protein death and cell life EMBO J. 17 1998 7151 7160
18. G.M. Cooper The Cell: A Molecular Appraoch 2000 Sinauer Associates Sunderland
19. I.W.J. Debyser, and P. Zwart Review of the most important diseases in crocodylia which possibly interfere with human health Vlaams Diergeneeskund. Tijdschr. 60 1991 164 169
20. V. Gerke, and S.E. Moss Annexins: from structure to function Physiol. Rev. 82 2002 331 371
21. F. Gharahdaghi, C.R. Weinberg, D.A. Meagher, B.S. Imai, and S.M. Mische Mass spectrometric identification of proteins from silver-stained polyacrylamide gel: a method for the removal of silver ions to enhance sensitivity Electrophoresis 20 1999 601 605
22. W.H. Goldmann, and D.E. Ingber Intact vinculin protein is required for control of cell shape, cell mechanics, and rac-dependent lamellipodia formation Biochem. Biophys. Res. Commun. 290 2002 749 755
23. R.E.W. Hancock, and R. Lehrer Cationic peptides: a new source of antibiotics Trends Biotechnol. 16 1998 82 88
24. R.E.W. Hancock, and A. Patrzykat Clinical development of cationic antimicrobial peptides: from natural to novel antibiotics Curr. Drug Targets Infect. Disord. 2 2002 79 83
25. S.B. Hedges, and L.L. Poling A molecular phylogeny of reptiles Science 283 1999 998 1001
26. E.R. Jacobson Infectious diseases and pathology of reptiles: color atlas and text 2007 CRC Press Boca Raton
27. S.L. Jones, J. Wang, C.W. Turck, and E.J. Brown A role for the actin-bundling protein L-plastin in the regulation of leukocyte integrin function Proc. Natl. Acad. Sci. U.S.A. 95 1998 9331 9336
28. W. Kabsch, and J. Vandekerckhove Structure and function of actin Annu. Rev. Biophys. Biomol. Struct. 21 1992 49 76
29. D.G. Kakhniashvili, L.A. Bulla, and S.R. Goodman The human erythrocyte proteome-analysis by ion trap mass spectrometry Mol. Cell. Proteomics 3 2004 501 509
30. J.D. Lippolis, and T.A. Reinhardt Proteornic survey of bovine neutrophils Vet. Immunol. Immunopathol. 103 2005 53 65
31. J. Liu, A.W. Bell, J.J.M. Bergeron, C.M. Yanofsky, B. Carrillo, C.E.H. Beaudrie, and R.E. Kearney Methods for peptide identification by spectral comparison Proteome Sci. 5 2007
32. Marcus, K., Immler, D., Sternberger, J., Meyer, H.E., 2000. Identification of platelet proteins separated by two-dimensional gel electrophoresis and analyzed by matrix assisted laser desorption/ioniztion-time of flight-mass spectrometry and detection of tyrosine-phosphorylated proteins. 2622-2636.
33. M.H. Mayeaux, and G.W. Winston Antibiotic effects on cytochromes P450 content and mixed-function oxygenase (MFO) activities in the American alligator, Alligator mississippiensis J. Vet. Pharmacol. Ther. 21 1998 274 281
34. M.E. Merchant, C. Roche, R.M. Elsey, and J. Prudhomme Antibacterial properties of serum from the American alligator (Alligator mississippiensis) Comp. Biochem. Physiol. B Biochem. Mol. Biol. 136 2003 505 513
35. M. Merchant, D. Thibodeaux, K. Loubser, and R.M. Elsey Amoebacidal effects of serum from the American alligator (Alligator mississippiensis) J. Parasitol. 90 2004 1480 1483
36. M.E. Merchant, M. Pallansch, R.L. Paulman, J.B. Wells, A. Nalca, and R. Ptak Antiviral activity of serum from the American alligator (Alligator mississippiensis) Antivir. Res. 66 2005 35 38
37. M.E. Merchant, N. Leger, E. Jerkins, K. Mills, M.B. Pallansch, R.L. Paulman, and R.G. Ptak Broad spectrum antimicrobial activity of leukocyte extracts from the American alligator (Alligator mississipiensis) Vet. Immunol. Immunopathol. 110 2006 221 228
38. M.E. Merchant, K. Mills, N. Leger, E. Jenkins, K.A. Vliet, and N. McDaniel Comparisons of innate immune activity of all known living crocodylian species Comp. Biochem. Physiol. B Biochem. Mol. Biol. 143 2006 133 137
39. N. Mor-Vaknin, A. Punturieri, K. Sitwala, and D.M. Markovitz Vimentin is secreted by activated macrophages Nat. Cell Biol. 5 2003 59 63
40. G.A. Olson, J.R. Hessler, and R.E. Faith Technics for blood collection and intravascular infusion of reptiles Lab. Anim. Sci. 25 1975 783 786
41. M.H. Parseghian, and K.A. Luhrs Beyond the walls of the nucleus: the role of histones in cellular signaling and innate immunity 2006 Natl Research Council Canada-N R C Research Press 589 604
42. D.N. Perkins, D.J.C. Pappin, D.M. Creasy, and J.S. Cottrell Probability-based protein identification by searching sequence databases using mass spectrometry data Electrophoresis 20 1999 3551 3567
43. A. Pingoud, and A. Jeltsch Structure and function of type II restriction endonucleases Nucleic Acids Res. 29 2001 3705 3727
44. K. Poelstra, W.W. Bakker, P.A. Klok, M.J. Hardonk, and D.K.F. Meijer A physiologic function for alkaline phosphatase: endotoxin detoxification Lab. Investig. 76 1997 319 327 (Pubitemid 27157340)
45. A. Sahu, and J.D. Lambris Structure and biology of complement protein C3, a connecting link between innate and acquired immunity Immunol. Rev. 180 2001 35 48
46. T.Y. Samgina, K.A. Artemenko, V.A. Gorshkov, S.V. Ogourtsov, R.A. Zubarev, and A.T. Lebedev De novo sequencing of peptides secreted by the skin glands of the Caucasian green frog Rana ridibunda Rapid Commun. Mass Spectrom. 22 2008 3517 3525
47. J.M. Schmidt, J.W. Zhang, H.S. Lee, M.H. Stromer, and R.M. Robson Interaction of talin with actin: sensitive modulation of filament crosslinking activity Arch. Biochem. Biophys. 366 1999 139 150
48. M.G. Scott, and R.E.W. Hancock Cationic antimicrobial peptides and their multifunctional role in the immune system Crit. Rev. Immunol. 20 2000 407 431
49. S. Sechi, and B.T. Chait Modification of cysteine residues by alkylation. A tool in peptide mapping and protein identification Anal. Chem. 70 1998 5150 5158
50. A. Shevchenko, I.C., M. Wilm, and M. Mann De Novo Peptide Sequencing by Nanoelectrospray Tandem Mass Spectrometry Using Triple Quadrupole and Quadrupole/Time-of-Flight Instruments 2000 Humana Press
51. K. Speicher, O. Kolbas, S. Harper, and D. Speicher Systematic analysis of peptide recoveries from in-gel digestions for protein identifications in proteome studies J. Biomol. Tech. 11 2000 74 86
52. C. Stegemann, A. Kolobov, Y.F. Leonova, D. Knappe, O. Shamova, T.V. Ovchinnikova, V.N. Kokryakov, and R. Hoffmann Isolation, purification and de novo sequencing of TBD-1, the first beta-defensin from leukocytes of reptiles Proteomics 9 2009 1364 1373
53. N. Tannu, and S. Hemby De novo protein sequence analysis of Macaca mulatta BMC Genomics 8 2007 270
54. L. Thadikkaran, M.A. Siegenthaler, D. Crettaz, P.A. Queloz, P. Schneider, and J.D. Tissot Recent advances in blood-related proteomics 2005 3019 3034
55. The UniProt, C., The Universal Protein Resource (UniProt) in 2010. Nucl. Acids Res. 38, D142-148.
56. G.G. Tomazella, I. da Silva, H.J. Laure, J.C. Rosa, R. Chammas, H.G. Wiker, G.A. de Souza, and L.J. Greene Proteomic analysis of total cellular proteins of human neutrophils Proteome Sci. 7 2009 9
57. A.V. Varshavsky The early history of the ubiquitin field Protein Sci. 15 2006 647 654
58. P. Waridel, A. Frank, H. Thomas, V. Surendranath, S. Sunyaev, P. Pevzner, and A. Shevchenko Sequence similarity-driven proteomics in organisms with unknown genomes by LC-MS/MS and automated de novo sequencing Proteomics 7 2007 2318 2329
59. Wells, J.M., McLuckey, S.A., 2005. Collision-induced dissociation (CID) of peptides and proteins.
60. J.R. Yates Mass spectral analysis in proteomics Annu. Rev. Biophys. Biomol. Struct. 33 2004 297 316
61. N.Y. Yount, A.S. Bayer, Y.Q. Xiong, and M.R. Yeaman Advances in antimicrobial peptide immunobiology Biopolymers 84 2006 435 458
62. M. Zasloff Antimicrobial peptides of multicellular organisms Nature 415 2002 389 395
63. H.I. Zeya, and J.K. Spitznag Cationic protein-bearing granules of polymorphonuclear leukocytes-separation from enzyme-rich granules Science 163 1969 1069
64. K.C. Zippel, H.B. Lillywhite, and C.R.J. Mladinich Anatomy of the crocodilian spinal vein J. Morphol. 258 2003 327 335