메뉴 건너뛰기




Volumn 1, Issue 2, 2009, Pages 119-125

Complete genome sequence of Catenulispora acidiphila type strain (ID 139908T)

(35)  Copeland, Alex a   Lapidus, Alla a   del Rio, Tijana Glavina a   Nolan, Matt a   Lucas, Susan a   Chen, Feng a   Tice, Hope a   Cheng, Jan Fang a   Bruce, David a,b   Goodwin, Lynne a,b   Pitluck, Sam a   Mikhailova, Natalia a   Pati, Amrita a   Ivanova, Natalia a   Mavromatis, Konstantinos a   Chen, Amy c   Palaniappan, Krishna c   Chain, Patrick a,d   Land, Miriam a,e   Hauser, Loren a,e   more..


Author keywords

Acidophilic; Aerobic; Catenulisporineae; Filamentous actinomycete; Free living; Non pathogenic; Vegetative and aerial mycelia

Indexed keywords

ACTINOBACTERIA; ACTINOMYCETALES; ARCHAEA; BACTERIA (MICROORGANISMS); FUNGI; MYCELIUM (GENUS); POSIBACTERIA;

EID: 78649846756     PISSN: 19443277     EISSN: None     Source Type: Journal    
DOI: 10.4056/sigs.17259     Document Type: Article
Times cited : (24)

References (21)
  • 1
    • 33747873467 scopus 로고    scopus 로고
    • Catenulispora acidiphila gen. nov., sp. nov., a novel, mycelium-forming actinomycete, and proposal of Catenulis-poraceae fam. nov
    • Pub Med doi:10.1099/ijs.0.63858-0
    • Busti E, Cavaletti L, Monciardini P, Schumann P, Rohde M, Sosio M, Donadio S. Catenulispora acidiphila gen. nov., sp. nov., a novel, myceliumforming actinomycete, and proposal of Catenulis-poraceae fam. nov. Int J Syst Evol Microbiol 2006; 56:1741-1746., Pub Med doi:10.1099/ijs.0.63858-0
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 1741-1746
    • Busti, E.1    Cavaletti, L.2    Monciardini, P.3    Schumann, P.4    Rohde, M.5    Sosio, M.6    Donadio, S.7
  • 2
    • 33747892407 scopus 로고    scopus 로고
    • Actinospica robiniae gen. nov., sp. nov. and Actinospica acidiphila sp. nov.: Proposal for Actinosicaceae fam. nov. and Catenulisporinae subord. nov. in the order Actinomycetales
    • PubMed doi:10.1099/ijs.0.63859-0
    • Cavaletti L, Monciardini P, Schumann P, Rohde M, Bamonte R, Busti E, Sosio M and Donadio S, Actinospica robiniae gen. nov., sp. nov. and Actinospica acidiphila sp. nov.: proposal for Actinosicaceae fam. nov. and Catenulisporinae subord. nov. in the order Actinomycetales. Int J Syst Evol Microbiol 2006; 56:1747-1753. PubMed doi:10.1099/ijs.0.63859-0
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 1747-1753
    • Cavaletti, L.1    Monciardini, P.2    Schumann, P.3    Rohde, M.4    Bamonte, R.5    Busti, E.6    Sosio, M.7    Donadio, S.8
  • 3
    • 0036203448 scopus 로고    scopus 로고
    • Multiple sequence alignment using partial order graphs
    • PubMed doi:10.1093/bioinformatics/18.3.452
    • Lee C, Grasso C, Sharlow MF. Multiple sequence alignment using partial order graphs. Bioinformatics 2002; 18:452-464., PubMed doi:10.1093/bioinformatics/18.3.452
    • (2002) Bioinformatics , vol.18 , pp. 452-464
    • Lee, C.1    Grasso, C.2    Sharlow, M.F.3
  • 4
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • PubMed
    • Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 2000; 17:540-552., PubMed
    • (2000) Mol Biol Evol , vol.17 , pp. 540-552
    • Castresana, J.1
  • 5
    • 50249100595 scopus 로고    scopus 로고
    • A rapid bootstrap algorithm for the RAxML web-servers
    • PubMed doi:10.1080/10635150802429642
    • Stamatakis A, Hoover P, Rougemont J. A rapid bootstrap algorithm for the RAxML web-servers. Syst Biol 2008; 57:758-771, PubMed doi:10.1080/10635150802429642
    • (2008) Syst Biol , vol.57 , pp. 758-771
    • Stamatakis, A.1    Hoover, P.2    Rougemont, J.3
  • 6
    • 38549144166 scopus 로고    scopus 로고
    • The Genomes OnLine Database (GOLD) in 2007: Status of genomic and metagenomic projects and their associated metadata
    • PubMed doi:10.1093/nar/gkm884
    • Liolios K, Mavromatis K, Tavernarakis N, Kyrpides NC. The Genomes OnLine Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res 2008; 36:D475-D479, PubMed doi:10.1093/nar/gkm884
    • (2008) Nucleic Acids Res , vol.36
    • Liolios, K.1    Mavromatis, K.2    Tavernarakis, N.3    Kyrpides, N.C.4
  • 7
    • 35648987943 scopus 로고    scopus 로고
    • Catenulispora rubra sp. nov., an acidophilic actinomycete isolated from forest soil
    • PubMed doi:10.1099/ijs.0.65056-0
    • Tamura T, Ishida Y, Sakane T. Suzuki K. (2007). Catenulispora rubra sp. nov., an acidophilic actinomycete isolated from forest soil. Int J Syst Evol Microbiol 2007; 57:2272-2274, PubMed doi:10.1099/ijs.0.65056-0
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 2272-2274
    • Tamura, T.1    Ishida, Y.2    Sakane, T.3    Suzuki, K.4
  • 8
    • 33645105253 scopus 로고    scopus 로고
    • Antibiotic-producing ability by representatives of a newly discovered lineage of actinomycetes
    • PubMed doi:10.1099/mic.0.28335-0
    • Busti E, Monciardini P, Cavaletti L, Bamonte R, Lazzarini A, Sosio M, Donadio S. Antibiotic-producing ability by representatives of a newly discovered lineage of actinomycetes. Microbiology 2006; 152:675-683, PubMed doi:10.1099/mic.0.28335-0
    • (2006) Microbiology , vol.152 , pp. 675-683
    • Busti, E.1    Monciardini, P.2    Cavaletti, L.3    Bamonte, R.4    Lazzarini, A.5    Sosio, M.6    Donadio, S.7
  • 9
    • 43449108562 scopus 로고    scopus 로고
    • Towards a richer description of our complete collection of genomes and metagenomes: The "Minimum Information about a Genome Sequence" (MIGS) specification
    • PubMed doi:10.1038/nbt1360
    • Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV et al. Towards a richer description of our complete collection of genomes and metagenomes: the "Minimum Information about a Genome Sequence" (MIGS) specification. Nat Biotechnol 2008; 26:541-547, PubMed doi:10.1038/nbt1360
    • (2008) Nat Biotechnol , vol.26 , pp. 541-547
    • Field, D.1    Garrity, G.2    Gray, T.3    Morrison, N.4    Selengut, J.5    Sterk, P.6    Tatusova, T.7    Thomson, N.8    Allen, M.J.9    Angiuoli, S.V.10
  • 10
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
    • PubMed doi:10.1073/pnas.87.12.4576
    • Woese CR, Kandler O, Wheelis ML. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci USA 1990; 87: 4576-4579, PubMed doi:10.1073/pnas.87.12.4576
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 11
    • 0000685441 scopus 로고    scopus 로고
    • G.Garrity G. M., Boone D. R. and Castenholz R. W. (), The Archaea, Deeply Branching and Phototrophic Bacteria
    • nd Ed. Vol 1 The Archaea, Deeply Branching and Phototrophic Bacteria. 2001 pp. 155-166
    • (2001) nd Ed , vol.1 , pp. 155-166
    • Garrity, G.M.1    Holt, J.2
  • 12
    • 0030893495 scopus 로고    scopus 로고
    • Proposal for a new hierarchic classification system, Actinobacteria classis nov
    • Stackebrandt E, Rainey FA, Ward-Rainey NL. Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 1997; 47:479-491.
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 479-491
    • Stackebrandt, E.1    Rainey, F.A.2    Ward-Rainey, N.L.3
  • 15
    • 52449105896 scopus 로고    scopus 로고
    • Catenulispora subtropica sp. nov. and Catenulispora yoronensis sp. nov
    • PubMed doi:10.1099/ijs.0.655610
    • Tamura T, Ishida Y, Otoguro M, Suzuki K. Catenulispora subtropica sp. nov. and Catenulispora yoronensis sp. nov. Int J Syst Evol Microbiol 2008; 58:1552-1555, PubMed doi:10.1099/ijs.0.655610
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 1552-1555
    • Tamura, T.1    Ishida, Y.2    Otoguro, M.3    Suzuki, K.4
  • 16
    • 2142687113 scopus 로고    scopus 로고
    • Laboratory cultivation of wide-spread and previously uncultured soil bacteria
    • PubMed doi:10.1128/AEM.69.12.7210-7215.2003
    • Joseph SJ, Hugenholtz P, Sangwan P, Osborne CA, Janssen PH. Laboratory cultivation of wide-spread and previously uncultured soil bacteria. Appl Environ Microbiol 2003; 69:7210-7215,PubMed doi:10.1128/AEM.69.12.7210-7215.2003
    • (2003) Appl Environ Microbiol , vol.69 , pp. 7210-7215
    • Joseph, S.J.1    Hugenholtz, P.2    Sangwan, P.3    Osborne, C.A.4    Janssen, P.H.5
  • 19
    • 80053447677 scopus 로고    scopus 로고
    • Anonymous, Oak Ridge National Laboratory and University of Tennessee
    • Anonymous. Prodigal Prokaryotic Dynamic Programming Genefinding Algorithm. Oak Ridge National Laboratory and University of Tennessee 2009 http://compbio.ornl.gov/prodigal
    • (2009) Prodigal Prokaryotic Dynamic Programming Genefinding Algorithm
  • 21
    • 69949116874 scopus 로고    scopus 로고
    • Expert Review of Functional Annotations for Microbial Genomes
    • In press, PubMed doi:10.1093/bioinformatics/btp393.
    • Markowitz VM, Mavromatis K, Ivanova NN, Chen IMA, Kyrpides NC. Expert Review of Functional Annotations for Microbial Genomes. Bioinformatics 2009; (In press)., PubMed doi:10.1093/bioinformatics/btp393.
    • (2009) Bioinformatics
    • Markowitz, V.M.1    Mavromatis, K.2    Ivanova, N.N.3    Chen, I.M.A.4    Kyrpides, N.C.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.