-
1
-
-
0013394889
-
Mechanisms of alternative pre-messenger RNA splicing
-
Black, D. L. (2003) Mechanisms of alternative pre-messenger RNA splicing. Annu. Rev. Biochem., 72, 291-336.
-
(2003)
Annu. Rev. Biochem.
, vol.72
, pp. 291-336
-
-
Black, D.L.1
-
2
-
-
4644334742
-
Multiple links between transcription and splicing
-
Kornblihtt, A. R., de la Mata, M., Fededa, J. P., Munoz, M. J. and Nogues, G. (2004) Multiple links between transcription and splicing. RNA, 10, 1489-1498.
-
(2004)
RNA
, vol.10
, pp. 1489-1498
-
-
Kornblihtt, A.R.1
De La Mata, M.2
Fededa, J.P.3
Munoz, M.J.4
Nogues, G.5
-
3
-
-
44649196386
-
Functional integration of transcriptional and RNA processing machineries
-
Pandit, S., Wang, D. and Fu, X. D. (2008) Functional integration of transcriptional and RNA processing machineries. Curr. Opin. Cell Biol., 20, 260-265.
-
(2008)
Curr. Opin. Cell Biol.
, vol.20
, pp. 260-265
-
-
Pandit, S.1
Wang, D.2
Fu, X.D.3
-
4
-
-
56549101959
-
Alternative isoform regulation in human tissue transcriptomes
-
Wang, E. T., Sandberg, R., Luo, S., Khrebtukova, I., Zhang, L., Mayr, C., Kingsmore, S. F., Schroth, G. P. and Burge, C. B. (2008) Alternative isoform regulation in human tissue transcriptomes. Nature, 456, 470-476.
-
(2008)
Nature
, vol.456
, pp. 470-476
-
-
Wang, E.T.1
Sandberg, R.2
Luo, S.3
Khrebtukova, I.4
Zhang, L.5
Mayr, C.6
Kingsmore, S.F.7
Schroth, G.P.8
Burge, C.B.9
-
5
-
-
75849145292
-
Expansion of the eukaryotic proteome by alternative splicing
-
Nilsen, T. W. and Graveley, B. R. (2010) Expansion of the eukaryotic proteome by alternative splicing. Nature, 463, 457-463.
-
(2010)
Nature
, vol.463
, pp. 457-463
-
-
Nilsen, T.W.1
Graveley, B.R.2
-
6
-
-
56749098074
-
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
-
Pan, Q., Shai, O., Lee, L. J., Frey, B. J. and Blencowe, B. J. (2008) Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nat. Genet., 40, 1413-1415.
-
(2008)
Nat. Genet.
, vol.40
, pp. 1413-1415
-
-
Pan, Q.1
Shai, O.2
Lee, L.J.3
Frey, B.J.4
Blencowe, B.J.5
-
7
-
-
0034213044
-
Connecting transcription to messenger RNA processing
-
Proudfoot, N. (2000) Connecting transcription to messenger RNA processing. Trends Biochem Sci, 25, 290-293.
-
(2000)
Trends Biochem Sci
, vol.25
, pp. 290-293
-
-
Proudfoot, N.1
-
8
-
-
60149110358
-
Pre-mRNA processing reaches back to transcription and ahead to translation
-
Moore, M. J. and Proudfoot, N. J. (2009) Pre-mRNA processing reaches back to transcription and ahead to translation. Cell, 136, 688-700.
-
(2009)
Cell
, vol.136
, pp. 688-700
-
-
Moore, M.J.1
Proudfoot, N.J.2
-
9
-
-
19344378943
-
Rules of engagement: Co-transcriptional recruitment of pre-mRNA processing factors
-
Bentley, D. L. (2005) Rules of engagement: co-transcriptional recruitment of pre-mRNA processing factors. Curr. Opin. Cell Biol., 17, 251-256.
-
(2005)
Curr. Opin. Cell Biol.
, vol.17
, pp. 251-256
-
-
Bentley, D.L.1
-
10
-
-
60349104299
-
The spliceosome: Design principles of a dynamic RNP machine
-
Wahl, M. C., Will, C. L. and Luhrmann, R. (2009) The spliceosome: design principles of a dynamic RNP machine. Cell, 136, 701-718.
-
(2009)
Cell
, vol.136
, pp. 701-718
-
-
Wahl, M.C.1
Will, C.L.2
Luhrmann, R.3
-
11
-
-
70350754211
-
Rates of in situ transcription and splicing in large human genes
-
Singh, J. and Padgett, R. A. (2009) Rates of in situ transcription and splicing in large human genes. Nat. Struct. Mol. Biol., 16, 1128-1133.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 1128-1133
-
-
Singh, J.1
Padgett, R.A.2
-
12
-
-
0037041395
-
An extensive network of coupling among gene expression machines
-
Maniatis, T. and Reed, R. (2002) An extensive network of coupling among gene expression machines. Nature, 416, 499-506.
-
(2002)
Nature
, vol.416
, pp. 499-506
-
-
Maniatis, T.1
Reed, R.2
-
13
-
-
33644856084
-
Exon tethering in transcription by RNA polymerase II
-
Dye, M. J., Gromak, N. and Proudfoot, N. J. (2006) Exon tethering in transcription by RNA polymerase II. Mol. Cell, 21, 849-859.
-
(2006)
Mol. Cell
, vol.21
, pp. 849-859
-
-
Dye, M.J.1
Gromak, N.2
Proudfoot, N.J.3
-
14
-
-
0033834946
-
Coupled in vitro synthesis and splicing of RNA polymerase II transcripts
-
Ghosh, S. and Garcia-Blanco, M. A. (2000) Coupled in vitro synthesis and splicing of RNA polymerase II transcripts. RNA, 6, 1325-1334.
-
(2000)
RNA
, vol.6
, pp. 1325-1334
-
-
Ghosh, S.1
Garcia-Blanco, M.A.2
-
15
-
-
33745132168
-
Functional coupling of RNAP II transcription to spliceosome assembly
-
Das, R., Dufu, K., Romney, B., Feldt, M., Elenko, M. and Reed, R. (2006) Functional coupling of RNAP II transcription to spliceosome assembly. Genes Dev., 20, 1100-1109.
-
(2006)
Genes Dev.
, vol.20
, pp. 1100-1109
-
-
Das, R.1
Dufu, K.2
Romney, B.3
Feldt, M.4
Elenko, M.5
Reed, R.6
-
16
-
-
33745220323
-
Linking splicing to Pol II transcription stabilizes pre-mRNAs and influences splicing patterns
-
Hicks, M. J., Yang, C. R., Kotlajich, M. V. and Hertel, K. J. (2006) Linking splicing to Pol II transcription stabilizes pre-mRNAs and influences splicing patterns. PLoS Biol., 4, e147.
-
(2006)
PLoS Biol.
, vol.4
-
-
Hicks, M.J.1
Yang, C.R.2
Kotlajich, M.V.3
Hertel, K.J.4
-
17
-
-
34548367537
-
Concurrent splicing and transcription are not sufficient to enhance splicing efficiency
-
Lazarev, D. and Manley, J. L. (2007) Concurrent splicing and transcription are not sufficient to enhance splicing efficiency. RNA, 13, 1546-1557.
-
(2007)
RNA
, vol.13
, pp. 1546-1557
-
-
Lazarev, D.1
Manley, J.L.2
-
18
-
-
37849032986
-
Functional coupling of last-intron splicing and 3′-end processing to transcription in vitro: The poly(A) signal couples to splicing before committing to cleavage
-
Rigo, F. and Martinson, H. G. (2008) Functional coupling of last-intron splicing and 3′-end processing to transcription in vitro: the poly(A) signal couples to splicing before committing to cleavage. Mol. Cell. Biol., 28, 849-862.
-
(2008)
Mol. Cell. Biol.
, vol.28
, pp. 849-862
-
-
Rigo, F.1
Martinson, H.G.2
-
19
-
-
0021709472
-
Pausing and premature termination of human RNA polymerase II during transcription of adenovirus in vivo and in vitro
-
Maderious, A. and Chen-Kiang, S. (1984) Pausing and premature termination of human RNA polymerase II during transcription of adenovirus in vivo and in vitro. Proc. Natl Acad. Sci. USA, 81, 5931-5935.
-
(1984)
Proc. Natl Acad. Sci. USA
, vol.81
, pp. 5931-5935
-
-
Maderious, A.1
Chen-Kiang, S.2
-
20
-
-
0022124413
-
Visualization of RNA polymerase II ternary transcription complexes formed in vitro on a Xenopus laevis vitellogenin gene
-
Ten Heggeler, B. and Wahli, W. (1985) Visualization of RNA polymerase II ternary transcription complexes formed in vitro on a Xenopus laevis vitellogenin gene. EMBO J., 4, 2269-2273.
-
(1985)
EMBO J.
, vol.4
, pp. 2269-2273
-
-
Ten Heggeler, B.1
Wahli, W.2
-
21
-
-
0023432527
-
Variations in template protection by the RNA polymerase II transcription complex during the initiation process
-
Cai, H. and Luse, D. S. (1987) Variations in template protection by the RNA polymerase II transcription complex during the initiation process. Mol. Cell. Biol., 7, 3371-3379.
-
(1987)
Mol. Cell. Biol.
, vol.7
, pp. 3371-3379
-
-
Cai, H.1
Luse, D.S.2
-
22
-
-
0024370643
-
Transcription elongation factor SII (TFIIS) enables RNA polymerase II to elongate through a block to transcription in a human gene in vitro
-
Reines, D., Chamberlin, M. J. and Kane, C. M. (1989) Transcription elongation factor SII (TFIIS) enables RNA polymerase II to elongate through a block to transcription in a human gene in vitro. J. Biol. Chem., 264, 10799-10809.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 10799-10809
-
-
Reines, D.1
Chamberlin, M.J.2
Kane, C.M.3
-
23
-
-
0028950288
-
RNA polymerase II ternary complexes may become arrested after transcribing to within 10 bases of the end of linear templates
-
Izban, M. G., Samkurashvili, I. and Luse, D. S. (1995) RNA polymerase II ternary complexes may become arrested after transcribing to within 10 bases of the end of linear templates. J. Biol. Chem., 270, 2290-2297.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 2290-2297
-
-
Izban, M.G.1
Samkurashvili, I.2
Luse, D.S.3
-
24
-
-
0031438709
-
Drosophila factor 2, an RNA polymerase II transcript release factor, has DNA-dependent ATPase activity
-
Xie, Z. and Price, D. (1997) Drosophila factor 2, an RNA polymerase II transcript release factor, has DNA-dependent ATPase activity. J. Biol. Chem., 272, 31902-31907.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 31902-31907
-
-
Xie, Z.1
Price, D.2
-
25
-
-
0346275196
-
Analysis of RNA polymerase II elongation in vitro
-
Adamson, T. E., Shore, S. M. and Price, D. H. (2003) Analysis of RNA polymerase II elongation in vitro. Methods Enzymol, 371, 264-275.
-
(2003)
Methods Enzymol
, vol.371
, pp. 264-275
-
-
Adamson, T.E.1
Shore, S.M.2
Price, D.H.3
-
26
-
-
34547563511
-
Properties of RNA polymerase II elongation complexes before and after the P-TEFb-mediated transition into productive elongation
-
Cheng, B. and Price, D. H. (2007) Properties of RNA polymerase II elongation complexes before and after the P-TEFb-mediated transition into productive elongation. J. Biol. Chem., 282, 21901-21912.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 21901-21912
-
-
Cheng, B.1
Price, D.H.2
-
27
-
-
0036544858
-
A new type of mutation causes a splicing defect in ATM
-
Pagani, F., Buratti, E., Stuani, C., Bendix, R., Dork, T. and Baralle, F. E. (2002) A new type of mutation causes a splicing defect in ATM. Nat. Genet., 30, 426-429.
-
(2002)
Nat. Genet.
, vol.30
, pp. 426-429
-
-
Pagani, F.1
Buratti, E.2
Stuani, C.3
Bendix, R.4
Dork, T.5
Baralle, F.E.6
-
28
-
-
0021100690
-
Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei
-
Dignam, J. D., Lebovitz, R. M. and Roeder, R. G. (1983) Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Res., 11, 1475-1489.
-
(1983)
Nucleic Acids Res.
, vol.11
, pp. 1475-1489
-
-
Dignam, J.D.1
Lebovitz, R.M.2
Roeder, R.G.3
-
29
-
-
0029328355
-
RNA transcription from immobilized DNA templates
-
Marble, H. A. and Davis, R. H. (1995) RNA transcription from immobilized DNA templates. Biotechnol. Prog., 11, 393-396.
-
(1995)
Biotechnol. Prog.
, vol.11
, pp. 393-396
-
-
Marble, H.A.1
Davis, R.H.2
-
30
-
-
0032900980
-
Intermediates in formation and activity of the RNA polymerase II preinitiation complex: Holoenzyme recruitment and a postrecruitment role for the TATA box and TFIIB
-
Ranish, J. A., Yudkovsky, N. and Hahn, S. (1999) Intermediates in formation and activity of the RNA polymerase II preinitiation complex: holoenzyme recruitment and a postrecruitment role for the TATA box and TFIIB. Genes Dev., 13, 49-63.
-
(1999)
Genes Dev.
, vol.13
, pp. 49-63
-
-
Ranish, J.A.1
Yudkovsky, N.2
Hahn, S.3
-
31
-
-
0027772890
-
Eukaryotic activators function during multiple steps of preinitiation complex assembly
-
Choy, B. and Green, M. R. (1993) Eukaryotic activators function during multiple steps of preinitiation complex assembly. Nature, 366, 531-536.
-
(1993)
Nature
, vol.366
, pp. 531-536
-
-
Choy, B.1
Green, M.R.2
-
32
-
-
75649136970
-
Poly(A) signal-dependent degradation of unprocessed nascent transcripts accompanies poly(A) signal-dependent transcriptional pausing in vitro
-
Kazerouninia, A., Ngo, B. and Martinson, H. G. Poly(A) signal-dependent degradation of unprocessed nascent transcripts accompanies poly(A) signal-dependent transcriptional pausing in vitro. RNA, 16, 197-210.
-
RNA
, vol.16
, pp. 197-210
-
-
Kazerouninia, A.1
Ngo, B.2
Martinson, H.G.3
-
33
-
-
0023151176
-
The capped U6 small nuclear RNA is transcribed by RNA polymerase III
-
Reddy, R., Henning, D., Das, G., Harless, M. and Wright, D. (1987) The capped U6 small nuclear RNA is transcribed by RNA polymerase III. J. Biol. Chem., 262, 75-81.
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 75-81
-
-
Reddy, R.1
Henning, D.2
Das, G.3
Harless, M.4
Wright, D.5
-
34
-
-
0033039863
-
Specific transcriptional pausing activates polyadenylation in a coupled in vitro system
-
Yonaha, M. and Proudfoot, N. J. (1999) Specific transcriptional pausing activates polyadenylation in a coupled in vitro system. Mol. Cell, 3, 593-600.
-
(1999)
Mol. Cell
, vol.3
, pp. 593-600
-
-
Yonaha, M.1
Proudfoot, N.J.2
-
35
-
-
25444475788
-
Functional coupling of cleavage and polyadenylation with transcription of mRNA
-
Adamson, T. E., Shutt, D. C. and Price, D. H. (2005) Functional coupling of cleavage and polyadenylation with transcription of mRNA. J. Biol. Chem., 280, 32262-32271.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 32262-32271
-
-
Adamson, T.E.1
Shutt, D.C.2
Price, D.H.3
-
36
-
-
0023098652
-
Transcription initiation by RNA polymerase II in vitro. at least two nucleotides must be added to form a stable ternary complex
-
Luse, D. S., Kochel, T., Kuempel, E. D., Coppola, J. A. and Cai, H. (1987) Transcription initiation by RNA polymerase II in vitro. At least two nucleotides must be added to form a stable ternary complex. J. Biol. Chem., 262, 289-297.
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 289-297
-
-
Luse, D.S.1
Kochel, T.2
Kuempel, E.D.3
Coppola, J.A.4
Cai, H.5
-
37
-
-
22244491011
-
Functional studies on the ATM intronic splicing processing element
-
Lewandowska, M. A., Stuani, C., Parvizpur, A., Baralle, F. E. and Pagani, F. (2005) Functional studies on the ATM intronic splicing processing element. Nucleic Acids Res, 33, 4007-4015.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 4007-4015
-
-
Lewandowska, M.A.1
Stuani, C.2
Parvizpur, A.3
Baralle, F.E.4
Pagani, F.5
-
38
-
-
69949177617
-
Fast ribozyme cleavage releases transcripts from RNA polymerase II and aborts co-transcriptional pre-mRNA processing
-
Fong, N., Ohman, M. and Bentley, D. L. (2009) Fast ribozyme cleavage releases transcripts from RNA polymerase II and aborts co-transcriptional pre-mRNA processing. Nat. Struct. Mol. Biol., 16, 916-922.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 916-922
-
-
Fong, N.1
Ohman, M.2
Bentley, D.L.3
|