Rhizobium vignae sp. nov., a symbiotic bacterium isolated from multiple legume species

International Journal of Systematic and Evolutionary Microbiology

Volumn 61, Issue 3, 2011, Pages 580-586

  Ren, Da Wei ^a   Chen, Wen Feng ^a   Sui, Xin Hua ^a   Wang, En Tao ^a,b   Chen, Wen Xin ^a  

^a CHINA AGRICULTURAL UNIVERSITY   (China)

^b INSTITUTO POLITÉCNICO NACIONAL   (Mexico)

Author keywords

[No Author keywords available]

Indexed keywords

FATTY ACID; RNA 16S;

ARTICLE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CLADISTICS; GENE SEQUENCE; HOUSEKEEPING GENE; LEGUME; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; RHIZOBIUM; RHIZOBIUM VIGNAE; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE; SYMBIONT; UNINDEXED SEQUENCE;

BACTERIAL TYPING TECHNIQUES; CHINA; CLUSTER ANALYSIS; DNA FINGERPRINTING; DNA, BACTERIAL; DNA, RIBOSOMAL; DNA, RIBOSOMAL SPACER; FABACEAE; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RHIZOBIUM; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); RHIZOBIUM; RHIZOBIUM GALEGAE; RHIZOBIUM HUAUTLENSE;

EID: 78649804714     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.023143-0     Document Type: Article

References (37)

1. de Lajudie, P., Willems, A., Nick, G., Moreira, F., Molouba, F., Hoste, B., Torck, U., Neyra, M., Collins, M. D. & other authors (1998). Characterization of tropical tree rhizobia and descripftion of Mesorhizobium plurifarium sp. nov. Int J Syst Bacteriol 48, 369-382.
2. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
3. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
4. Frank, B. (1889). Über die Pilzsysymbiose der Leguminosen. Ber Dtsch Bot Ges 7, 332-346.
5. Gao, J. L., Sun, J. G., Li, Y., Wang, E. T. & Chen, W. X. (1994). Numerical taxonomy and DNA relatedness of tropical rhizobia isolated from Hainan province, China. Int J Syst Bacteriol 44, 151-158. (Pubitemid 24023668)
6. García-Fraile, P., Rivas, R., Willems, A., Peix, A., Martens, M., Martínez-Molina, E., Mateos, P. F. & Velázquez, E. (2007). Rhizobium cellulosilyticum sp. nov., isolated from sawdust of Populus alba. Int J Syst Evol Microbiol 57, 844-848.
7. Gaunt, M. W., Turner, S. L., Rigottier-Gois, L., Lloyd-Macgilp, S. A. & Young, J. P. W. (2001). Phylogenies of atpD and recA support the small subunit rRNA-based classification of rhizobia. Int J Syst Evol Microbiol 51, 2037-2048. (Pubitemid 33107425)
8. Graham, P. H., Sadowsky, M. J., Keyser, H. H., Barnet, Y. M., Bradley, R. S., Cooper, J. E., De Ley, D. J., Jarvis, B. D. W., Roslycky, E. B. & other authors (1991). Proposed minimal standards for the description of new genera and species of root- and stem-nodulating bacteria. Int J Syst Bacteriol 41, 582-587.
9. Gu, J., Wang, E. T. & Chen, W. X. (2007). Genetic diversity of rhizobia associated with Desmodium species grown in China. Lett Appl Microbiol 44, 286-292.
10. Hou, B. C., Wang, E. T., Li, Y., Jr, Jia, R. Z., Chen, W. F., Gao, Y., Dong, R. J. & Chen, W. X. (2009). Rhizobium tibeticum sp. nov., a symbiotic bacterium isolated from Trigonella archiducis-nicolai (Sirj.) Vassilcz. Int J Syst Evol Microbiol 59, 3051-3057.
11. AL. In Bergey's Manual of Systematic Bacteriology, vol. 1, pp. 234-254. Edited by N. R. Krieg & J. G. Holt. Baltimore: The Williams & Wilkins Co.
12. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian protein metabolism, III, pp. 21-32. Edited by H. N. Munro. New York: Academic Press.
13. Kimura, M. (1983). The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press.
14. Kwon, S. W., Park, J.-Y., Kim, J.-S., Kang, J. W., Cho, Y. H., Lim, C. K., Parker, M. A. & Lee, G. B. (2005). Phylogenetic analysis of the genera Bradyrhizobium, Mesorhizobium, Rhizobium and Sinorhizobium on the basis of 16S rRNA gene and internally transcribed spacer region sequences. Int J Syst Evol Microbiol 55, 263-270. (Pubitemid 40185500)
15. Lin, D. X., Chen, W. F., Wang, F. Q., Hu, D., Wang, E. T., Sui, X. H. & Chen, W. X. (2009). Rhizobium mesosinicum sp. nov., isolated from root nodules of three different legumes. Int J Syst Evol Microbiol 59, 1919-1923.
16. Lindström, K. (1989). Rhizobium galegae, a new species of legume root nodule bacteria. Int J Syst Bacteriol 39, 365-367.
17. Lu, Y. L., Chen, W. F., Han, L. L., Wang, E. T. & Chen, W. X. (2009). Rhizobium alkalisoli sp. nov., isolated from Caragana intermedia growing in saline-alkaline soils in the north of China. Int J Syst Evol Microbiol 59, 3006-3011.
18. Marmur, J. (1961). A procedure for isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
19. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
20. Martens, M., Dawyndt, P., Coopman, R., Gillis, M., De Vos, P. & Willems, A. (2008). Advantages of multilocus sequence analysis for taxonomic studies: a case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium). Int J Syst Evol Microbiol 58, 200-214. (Pubitemid 351843565)
21. Peng, G. X., Tan, Z. Y., Wang, E. T., Reinhold-Hurek, B., Chen, W. F. & Chen, W. X. (2002). Identification of isolates from soybean nodules in Xinjiang Region as Sinorhizobium xinjiangense and genetic differentiation of S. xinjiangense from Sinorhizobium fredii. Int J Syst Evol Microbiol 52, 457-462. (Pubitemid 34257404)
22. Quan, Z. X., Bae, H. S., Baek, J. H., Chen, W. F., Im, W. T. & Lee, S. T. (2005). Rhizobium daejeonense sp. nov. isolated from a cyanide treatment bioreactor. Int J Syst Evol Microbiol 55, 2543-2549.
23. Rasolomampianina, R., Bailly, X., Fetiarison, R., Rabevohitra, R., Béna, G., Ramaroson, L., Raherimandimby, M., Moulin, L., De Lajudie, P. & other authors (2005). Nitrogen-fixing nodules from rose wood legume trees (Dalbergia spp.) endemic to Madagascar host seven different genera belonging to alpha- and beta- Proteobacteria. Mol Ecol 14, 4135-4146. (Pubitemid 44943743)
24. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
25. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599. (Pubitemid 47236692)
26. Tan, Z. Y., Xu, X. D., Wang, E. T., Gao, J. L., Martinez-Romero, E. & Chen, W. X. (1997). Phylogenetic and genetic relationships of Mesorhizobium tianshanense and related rhizobia. Int J Syst Bacteriol 47, 874-879. (Pubitemid 27327787)
27. Terefework, Z., Kaijalainen, S. & Lindström, K. (2001). AFLP fingerprinting as a tool to study the genetic diversity of Rhizobium galegae isolated from Galega orientalis and Galega officinalis. J Biotechnol 91, 169-180. (Pubitemid 32868779)
28. Tighe, S. W., de Lajudie, P., Dipietro, K., Lindström, K., Nick, G. & Jarvis, B. D. W. (2000). Analysis of cellular fatty acids and phenotypic relationships of Agrobacterium, Bradyrhizobium, Mesorhizobium, Rhizobium and Sinorhizobium species using the Sherlock Microbial Identification System. Int J Syst Evol Microbiol 50, 787-801. (Pubitemid 30167528)
29. Turner, S. L. & Young, J. P. W. (2000). The glutamine synthetases of rhizobia: phylogenetics and evolutionary implications. Mol Biol Evol 17, 309-319. (Pubitemid 30075600)
30. van Berkum, P., Elia, P. & Eardly, B. D. (2006). Multilocus sequence typing as an approach for population analysis of Medicago-nodulating rhizobia. J Bacteriol 188, 5570-5577. (Pubitemid 44157314)
31. Vandamme, P., Vancanneyt, M., van Belkum, A., Segers, P., Quint, W. G., Kersters, K., Paster, B. J. & Dewhirst, F. E. (1996). Polyphasic analysis of strains of the genus Capnocytophaga and Centers for Disease Control group DF-3. Int J Syst Bacteriol 46, 782-791.
32. Vincent, J. M. (1970). A Manual for the Practical Study of Root-Nodule Bacteria. Oxford, UK: Blackwell Scientific Publications.
33. Wang, E. T., van Berkum, P., Beyene, D., Sui, X. H., Dorado, O., Chen, W. X. & Martínez-Romero, E. (1998). Rhizobium huautlense sp. nov., a symbiont of Sesbania herbacea that has a close phylogenetic relationship with Rhizobium galegae. Int J Syst Bacteriol 48, 687-699. (Pubitemid 28394648)
34. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
35. Yan,A.M., Wang,E.T.,Kan, F. L.,Tan,Z.Y., Sui, X. H.,Reinhold-Hurek,B. & Chen, W. X. (2000). Sinorhizobium meliloti associated with Medicago sativa and Melilotus spp. in arid saline soils in Xinjiang, China. Int J Syst Evol Microbiol 50, 1887-1891.
36. Zhang, Y. F., Wang, F. Q. & Chen, W. X. (2006). Numerical taxonomy and 16S rDNA PCR-rFLP analysis of rhizobial strains isolated from root nodules of cowpea and mung bean grown in different regions of China. Wei Sheng Wu Xue Bao 46, 861-868 (in Chinese).
37. Zhao, C. T., Wang, E. T., Chen, W. F. & Chen, W. X. (2008). Diverse genomic species and evidences of symbiotic gene lateral transfer detected among the rhizobia associated with Astragalus species grown in the temperate regions of China. FEMS Microbiol Lett 286, 263-273.