Polyphasic analysis of strains of the genus Capnocytophaga and Centers for Disease Control group DF-3

International Journal of Systematic Bacteriology

Volumn 46, Issue 3, 1996, Pages 782-791

  Vandamme, P ^a,b   Vancanneyt, M ^a   Van Belkum, A ^c   Segers, P ^a   Quint, W G V ^d   Kersters, K ^a   Paster, B J ^e   Dewhirst, F E ^e  

^a GHENT UNIVERSITY   (Belgium)

^b ANTWERP UNIVERSITY HOSPITAL   (Belgium)

^c ERASMUS MEDICAL CENTER   (Netherlands)

^d REINIER DE GRAAF HOSPITAL   (Netherlands)

^e FORSYTH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIUM ISOLATION; BACTEROIDES; CAPNOCYTOPHAGA; DNA BINDING; DNA FINGERPRINTING; DNA POLYMORPHISM; GENETIC VARIABILITY; LIPID COMPOSITION; NONHUMAN; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; STRAIN DIFFERENCE; TAXONOMY;

EID: 0029684119     PISSN: 00207713     EISSN: None     Source Type: Journal    
DOI: 10.1099/00207713-46-3-782     Document Type: Article

References (56)

1. Akopyanz, N., N. O. Bukanov, T. U. Westblom, S. Kresovich, and D. E. Berg. 1992. DNA diversity among clinical isolates of Helicobacter pylori detected by PCR-hased RAPD fingerprinting. Nucleic Acids Res. 20:5137-5142.
2. Bernard, K., C. Cooper, S. Tessier, and E. P. Ewan. 1991. Use of chemotaxonomy as an aid to differentiate among Capnocytophaga species, CDC group DF-3, and aerotolerant strains of Leptotrichia buccalis. J. Clin. Microbiol. 29:2263-2265.
3. Bernardet, J.-F., P. Segers, M. Vancanneyt, K. Kersters, and P. Vandamme. 1996. Cutting a Gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978). Int. J. Syst. Bacteriol. 46:128-148.
4. Brenner, D. J., D. G. Hollis, G. R. Fanning, and R. E. Weaver. 1989. Capnocytophaga canimorsus sp. nov. (formerly CDC group DF-2), a cause of septicemia following dog bit, and C. cynodegmi sp. nov., a cause of localized wound infection following dog bite. J. Clin. Microbiol. 27:231-235.
5. Clayton, R. A., G. Sutton, P. S. Hinkle, C. Bult, and C. Fields. 1995. Intraspecific variation in small-subunit rRNA sequences in GenBank: why single sequences may not adequately represent prokaryotic taxa. Int. J. Syst. Bacteriol. 45:595-599.
6. Collins, M. D., H. N. Shah, A. S. McKee, and R. M. Kroppenstedt. 1982. Chemotaxonomy of the genus Capnocytophaga. J. Appl. Bacteriol. 52:409-415.
7. Costas, M. 1992. Classification, identification, and typing of bacteria by the analysis of their one-dimensional polyacrylamide gel electrophoretic protein patterns. Adv. Electrophor. 5:351-408.
8. Daneshvar, M. I., D. G. Hollis, and C. W. Moss. 1991. Chemical characterization of clinical isolates which are similar to CDC group DF-3 bacteria. J. Clin. Microbiol. 29:2351-2353.
9. Dees, S. B., D. E. Karr, D. Hollis, and C. W. Moss. 1982. Cellular fatty acids of Capnocytophaga species. J. Clin. Microbiol. 16:779-783.
10. Dees, S. B., J. Powell, C. W. Moss, D. G. Hollis, and R. E. Weaver. 1981. Cellular fatty acid composition of organisms frequently associated with human infections resulting from dog bites: Pasteurella multocida and groups EF-4, Hj, M-5, and DF-2. J. Clin. Microbiol. 14:612-616.
11. De Ley, J. 1970. Reexamination of the association between melting point, buoyant density, and chemical base composition of deoxyribonucleic acid. J. Bacteriol. 101:738-754.
12. De Ley, J., H. Cattoir, and A. Reynaerts. 1970. The quantitative measurement of DNA hybridization from renaturation rates. Eur. J. Biochem. 12: 133-142.
13. Dewhirst, F. E., B. J. Paster, K.-H. Li, and G. J. Fraser. 1991. New human Capnocytophaga species by PAGE and 16S rRNA sequencing. J. Dent. Res. 70:319.
14. Eaton, K. A., F. E. Dewhirst, M. J. Radin, J. G. Fox, B. J. Paster, S. Krakowka, and D. R. Morgan. 1993. Helicobacter acinonyx sp. nov., isolated from cheetahs with gastritis. Int. J. Syst. Bacteriol. 43:99-106.
15. Feinberg, A., and B. Vogelstein. 1993. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal. Biochem. 132:6-13.
16. Fox, G. E., J. D. Wisotzkey, and P. Jurtshuk. 1992. How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int. J. Syst. Bacteriol. 42:166-170.
17. Fox, J. G., L. L. Yan, F. E. Dewhirst, B. J. Paster, B. Shames, J. C. Murphy, A. Hayward, J. C. Belcher, and E. N. Mendes. 1995. Helicobacter bills sp. nov., a novel Helicobacter species isolated from bile, livers, and intestines of aged, inbred mice. J. Clin. Microbiol. 33:445-454.
18. Gherna, R., and C. R. Woese. 1992. A partial phylogenetic analysis of the "flavobacter-bacteroides" phylum: basis for taxonomic restructuring. Syst. Appl. Microbiol. 15:513-521.
19. Giesendorf, B. A. J., W. G. V. Quint, P. Vandamme, and A. van Belkum. Generation of DNA probes for detection of microorganisms by polymerase chain reaction. Zentrl. Bakteriol., in press.
20. Giesendorf, B. A. J., A. van Belkum, A. Koeken, H. Stegeman, M. H. C. Henkens, J. Van Der Plas, H. Goossens, H. G. M. Niesters, and W. G. V. Quint. 1993. Development of species-specific DNA probes for Campylobacter jejuni, Campylobacter coli, and Campylobacter lari by polymerase chain reaction fingerprinting. J. Clin. Microbiol. 31:1541-1546.
21. Holt, S. C., G. Forcier, and B. J. Takacs. 1979. Fatty acid composition of gliding bacteria: oral isolates of Capnocytophaga compared with Sporocytophaga. Infect. Immun. 26:298-304.
22. Holt, S. C., E. R. Leadbetter, and S. S. Sokransky. 1979. Capnocytophaga: new genus of gram-negative gliding bacteria. II. Morphology and ultrastructure. Arch. Microbiol. 122:17-27.
23. Jukes, T. H., and C. R. Cantor. 1969. Evolution of protein molecules, p. 21-132. In H. N. Munro (ed.). Mammalian protein metabolism, vol. 3. Academic Press, Inc., New York.
24. Khwaja, K. J., P. Parish, M. J. Aldred, and W. G. Wade. 1990. Protein profiles of Capnocytophaga species. J. Appl. Bacteriol. 68:385-390.
25. Kristiansen, J. E., A. Bremmegaard, H. E. Busk, O. Heltberg, W. Frederiksen, and T. Justersen. 1984. Rapid identification of Capnocytophaga isolated from septicaemic patient. Eur. J. Clin. Microbiol. 3:236-240.
26. Laughon, B. E., S. A. Syed, and W. J. Loesche. 1982. API ZYM system for the identification of Bacteroides spp., Capnocytophaga spp. and spirochaetes of oral origin. J. Clin. Microbiol. 15:97-102.
27. Leadbetter, E. R., S. C. Holt, and S. S. Sokransky. 1979. Capnocytophaga: new genus of gram-negative gliding bacteria. I. General characteristics, taxonomic considerations and significance. Arch. Microbiol. 122:9-16.
28. Marmur, J., and P. Doty. 1962. Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J. Mol. Biol. 5:109-118.
29. Newman, M. G., V. L. Sutter, M. J. Pickett, U. Blachman, J. R. Greenwood, V. Grinenko, and D. Citron. 1979. Detection, identification and comparison of Capnocytophaga. Bacteroides ochraceus, and DF-1. J. Clin. Microbiol. 10:557-562.
30. Owen, R. J., and P. J. H. Jackman. 1982. The similarities between Pseudomonas paucimobilis and allied bacteria derived from analysis of deoxyribonucleic acids and electrophoretic protein patterns. J. Gen. Microbiol. 128: 2945-2954.
31. Paster, B. J., and F. E. Dewhirst. 1988. Phylogeny of campylobacters, wolinellas, Bacteroides gracilis, and Bacteroides ureolyticus by 16S ribosomal ribonucleic acid sequencing. Int. J. Syst. Bacteriol. 38:56-62.
32. Paster, B. J., F. E. Dewhirst, I. Olsen, and G. J. Fraser. 1994. Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria. J. Bacteriol. 176:725-732.
33. Pitcher, D. G., N. A. Saunders, and R. J. Owen. 1989. Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett. Appl. Microbiol. 8:151-156.
34. Pot, B., P. Vandamme, and K. Kersters. 1994. Analysis of electrophoretic whole-organism protein fingerprints. In M. Goodfellow and A. G. O'Donnell (ed.), p. 493-521. Modern microbial methods. Chemical methods in prokaryotic systematics. J. Wiley and Sons, Ltd., Chichester, United Kingdom.
35. Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
36. Sasser, M. 1995. Personal communication of cellular fatty acid composition provided from the anaerobic bacteria database. Microbial ID, Inc., Newark, Del.
37. Segers, P., W. Mannheim, M. Vancanneyt, K. De Brandt, K.-H. Hinz, K. Kersters, and P. Vandamme. 1993. Riemerella anatipestifer gen. nov., comb. nov., the causative agent of septicemia anserum exsudativa, and its phylogenetic affiliation within the Flavobaclerium-Cytophaga rRNA homology group. Int. J. Syst. Bacteriol. 43:768-776.
38. Sokransky, S. S., S. C. Holt, E. R. Leadbetter, A. C. R. Tanner, E. Savitt, and B. F. Hammond. 1979. Capnocytophaga: new genus of gram-negative gliding bacteria. III. Physiological characterisation. Arch. Microbiol. 122:29-33.
39. Speck, H., R. M. Kroppenstedt, and W. Mannheim. 1987. Genomic relationships and species differentiation in the genus Capnocytophaga. Zentralbl. Bakteriol. Hyg. A 266:390-402.
40. Stackebrandt, E., and B. M. Goebel. 1994. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44:846-849.
41. Struelens, M., E. Carlier, N. Maes, E. Serruys, W. Quint, and A. van Belkum. 1993. Nosocomial colonisation and infection with multiresistant Acinetobacter baumanii: outbreak delineation using DNA macrorestriction analysis and PCR fingerprinting. J. Hosp. Infect. 25:15-32.
42. van Belkum, A. 1994. DNA fingerprinting of medically important microorganisms by use of PCR. Clin. Microbiol. Rev. 7:174-184.
43. van Belkum, A., R. Bax, P. Peerbooms, W. H. F. Goessens, N. Van Leeuwen, and W. G. V. Quint. 1993. Comparison of phage typing and DNA fingerprinting by polymerase chain reaction for discrimination of methicillin-resistant Staphylococcus aureus strains. J. Clin. Microbiol. 31:798-803.
44. Vandamme, P., E. Falsen, B. Pot, B. Hoste, K. Kersters, and J. De Ley. 1989. Identification of EF group 22 campylobacters from gastroenteritis cases as Campylobacter concisus. J. Clin. Microbiol. 27:1775-1781.
45. Vandamme, P., B. Pot, E. Falsen, K. Kersters, and J. De Ley. 1990. Intra-and interspecific relationships of veterinary campylobacters revealed by numerical analysis of electrophoretic protein profiles and DNA:DNA hybridizations. Syst. Appl. Microbiol. 13:295-303.
46. Vandamme, P., P. Segers, M. Vancanneyt, K. Van Hove, R. Mutters, J. Hommez, F. Dewhirst, B. Paster, K. Kersters, E. Falsen, L. Devrieze, K.-H. Hinz, and W. Mannheim. 1994. Ornithobacterium rhinotracheale gen. nov., sp. nov. isolated from the avian respiratory tract. Int. J. Syst. Bacteriol. 44:24-37.
47. Vandamme, P., M. Vancanneyt, B. Pot, L. Mels, B. Hoste, D. Dewettinck, L. Vlaes, C. Van Den Borre, R. Higgins, J. Hommez, K. Kersters, J.-P. Butzler, and H. Goossens. 1992. Polyphasic taxonomic study of the emended genus Arcobacter with Arcobacter butzleri comb. nov. and Arcobacter skirrowii sp. nov., an aerotolerant bacterium isolated from veterinary specimens. Int. J. Syst. Bacteriol. 42:344-356.
48. Vauterin, L., P. Yang, B. Hoste, M. Vancanneyt, E. L. Civerolo, J. Swings, and K. Kersters. 1991. Differentiation of Xanthomonas campestris pv. citri strains by sodium dodecyl sulfate-polyacrylamide gel electrophoresis of proteins, fatty acid analysis, and DNA-DNA hybridization. Int. J. Syst. Bacteriol. 41:535-542.
49. Versalovic, J., T. Koeuth, and J. R. Lupski. 1991. Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res. 19:6823-6831.
50. Wallace, P. L., D. G. Hollis, R. E. Weaver, and C. W. Moss. 1989. Characterization of CDC group DF-3 by cellular fatty acid analysis. J. Clin. Microbiol. 27:735-737.
51. Williams, B. L., and B. F. Hammond. 1979. Capnocytophaga: new genus of gram-negative gliding bacteria. IV. DNA base composition and sequence homology. Arch. Microbiol. 122:29-33.
52. Williams, B. L., D. Hollis, and L. V. Holdeman. 1979. Synonymy of strains of Center for Disease Control group DF-1 with species of Capnocytophaga. J. Clin. Microbiol. 10:550-556.
53. Wilson, M. J., W. G. Wade, and A. J. Weightman. 1995. Restriction fragment length polymorphism analysis of PCR-amplified 16S ribosomal DNA of human Capnocytophaga. J. Appl. Bacteriol. 78:394-401.
54. Woese, C. R. 1987. Bacterial evolution. Microbiol. Rev. 51:221-271.
55. Woese, C. R., D. Yang, L. Mandelco, and K. O. Stetter. 1990. The flexibacterflavobacter connection. Syst. Appl. Microbiol. 13:161-165.
56. Yamamoto, T., S. Kajiura, Y. Hirai, and T. Watanabe. 1994. Capnocytophaga haemolytica sp. nov. and Capnocytophaga granulosa sp. nov., from human dental plaque. Int. J. Syst. Bacteriol. 44:324-329.