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Volumn 11, Issue SUPPL. 4, 2010, Pages

SVM-based prediction of linear B-cell epitopes using Bayes Feature Extraction

Author keywords

[No Author keywords available]

Indexed keywords

ANTIGEN; EPITOPE; GLUTAMINE; PROLINE; TRYPTOPHAN; PEPTIDE;

EID: 78649796508     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-11-S4-S21     Document Type: Article
Times cited : (70)

References (24)
  • 2
    • 0027656984 scopus 로고
    • PREDITOP: a program for antigenicity prediction
    • 10.1016/0263-7855(93)80074-2, 7509182
    • Pellequer JL, Westhof E. PREDITOP: a program for antigenicity prediction. J Mol Graph 1993, 11:204-210. 10.1016/0263-7855(93)80074-2, 7509182.
    • (1993) J Mol Graph , vol.11 , pp. 204-210
    • Pellequer, J.L.1    Westhof, E.2
  • 3
    • 0032829397 scopus 로고    scopus 로고
    • Predictive estimation of protein linear epitopes by using the program PEOPLE
    • 10.1016/S0264-410X(99)00329-1, 10506656
    • Alix AJ. Predictive estimation of protein linear epitopes by using the program PEOPLE. Vaccine 1999, 18:311-314. 10.1016/S0264-410X(99)00329-1, 10506656.
    • (1999) Vaccine , vol.18 , pp. 311-314
    • Alix, A.J.1
  • 4
    • 0037263777 scopus 로고    scopus 로고
    • BEPITOPE: predicting the location of continuous epitopes and patterns in proteins
    • 10.1002/jmr.602, 12557235
    • Odorico M, Pellequer JL. BEPITOPE: predicting the location of continuous epitopes and patterns in proteins. J Mol Recognit 2003, 16:20-22. 10.1002/jmr.602, 12557235.
    • (2003) J Mol Recognit , vol.16 , pp. 20-22
    • Odorico, M.1    Pellequer, J.L.2
  • 5
    • 35048872790 scopus 로고    scopus 로고
    • BcePred: Prediction of Continuous B-Cell Epitopes in Antigenic Sequences Using Physico-chemical Properties
    • Springer, G.Nicosia, V.Cutello, P.J. Bentley and J.Timis
    • Saha S, Raghava GPS. BcePred: Prediction of Continuous B-Cell Epitopes in Antigenic Sequences Using Physico-chemical Properties. ICARIS 2004, LNCS 3239 2004, 197-204. Springer, G.Nicosia, V.Cutello, P.J. Bentley and J.Timis.
    • (2004) ICARIS 2004, LNCS 3239 , pp. 197-204
    • Saha, S.1    Raghava, G.P.S.2
  • 6
    • 11144246404 scopus 로고    scopus 로고
    • Benchmarking B cell epitope prediction underperformance of existing methods
    • 10.1110/ps.041059505, 2253337, 15576553
    • Blythe MJ, Flower DR. Benchmarking B cell epitope prediction underperformance of existing methods. Protein Sci 2005, 14:246-248. 10.1110/ps.041059505, 2253337, 15576553.
    • (2005) Protein Sci , vol.14 , pp. 246-248
    • Blythe, M.J.1    Flower, D.R.2
  • 7
    • 33751104704 scopus 로고    scopus 로고
    • Improved method for predicting linear B-cell epitopes
    • 10.1186/1745-7580-2-2, 1479323, 16635264
    • Larsen JE, Lund O, Nielsen M. Improved method for predicting linear B-cell epitopes. Immunome Res 2006, 2:2. 10.1186/1745-7580-2-2, 1479323, 16635264.
    • (2006) Immunome Res , vol.2 , pp. 2
    • Larsen, J.E.1    Lund, O.2    Nielsen, M.3
  • 8
    • 33745030152 scopus 로고    scopus 로고
    • Machine learning approaches for prediction of linear B-cell epitopes on proteins
    • 10.1002/jmr.771, 16598694
    • Söllner J, Mayer B. Machine learning approaches for prediction of linear B-cell epitopes on proteins. J Mol Recognit 2006, 19:200-208. 10.1002/jmr.771, 16598694.
    • (2006) J Mol Recognit , vol.19 , pp. 200-208
    • Söllner, J.1    Mayer, B.2
  • 9
    • 33748254730 scopus 로고    scopus 로고
    • Prediction of continuous B-cell epitopes in an antigen using recurrent neural network
    • 10.1002/prot.21078, 16894596
    • Saha S, Raghava GP. Prediction of continuous B-cell epitopes in an antigen using recurrent neural network. Proteins 2006, 65:40-48. 10.1002/prot.21078, 16894596.
    • (2006) Proteins , vol.65 , pp. 40-48
    • Saha, S.1    Raghava, G.P.2
  • 10
    • 34548301416 scopus 로고    scopus 로고
    • Prediction of linear B-cell epitopes using amino acid pair antigenicity scale
    • 10.1007/s00726-006-0485-9, 17252308
    • Chen J, Liu H, Yang J, Chou KC. Prediction of linear B-cell epitopes using amino acid pair antigenicity scale. Amino Acids 2007, 33:423-428. 10.1007/s00726-006-0485-9, 17252308.
    • (2007) Amino Acids , vol.33 , pp. 423-428
    • Chen, J.1    Liu, H.2    Yang, J.3    Chou, K.C.4
  • 11
    • 47649130438 scopus 로고    scopus 로고
    • Predicting linear B-cell epitopes using string kernels
    • 10.1002/jmr.893, 2683948, 18496882
    • El-Manzalawy Y, Dobbs D, Honavar V. Predicting linear B-cell epitopes using string kernels. J Mol Recognit 2008, 21:243-255. 10.1002/jmr.893, 2683948, 18496882.
    • (2008) J Mol Recognit , vol.21 , pp. 243-255
    • El-Manzalawy, Y.1    Dobbs, D.2    Honavar, V.3
  • 12
    • 60749128663 scopus 로고    scopus 로고
    • COBEpro: a novel system for predicting continuous B-cell epitopes
    • 10.1093/protein/gzn075, 2644406, 19074155
    • Sweredoski MJ, Baldi P. COBEpro: a novel system for predicting continuous B-cell epitopes. Protein Eng Des Sel 2009, 22:113-120. 10.1093/protein/gzn075, 2644406, 19074155.
    • (2009) Protein Eng Des Sel , vol.22 , pp. 113-120
    • Sweredoski, M.J.1    Baldi, P.2
  • 13
    • 59249095901 scopus 로고    scopus 로고
    • A machine-learning approach for predicting B-cell epitopes
    • 10.1016/j.molimm.2008.09.009, 18947876
    • Rubinstein ND, Mayrose I, Pupko T. A machine-learning approach for predicting B-cell epitopes. Mol Immunol 2009, 46:840-847. 10.1016/j.molimm.2008.09.009, 18947876.
    • (2009) Mol Immunol , vol.46 , pp. 840-847
    • Rubinstein, N.D.1    Mayrose, I.2    Pupko, T.3
  • 14
    • 70449441123 scopus 로고    scopus 로고
    • Epitopia: a web-server for predicting B-cell epitopes
    • 10.1186/1471-2105-10-287, 2751785, 19751513
    • Rubinstein ND, Mayrose I, Martz E, Pupko T. Epitopia: a web-server for predicting B-cell epitopes. BMC Bioinformatics 2009, 10:287. 10.1186/1471-2105-10-287, 2751785, 19751513.
    • (2009) BMC Bioinformatics , vol.10 , pp. 287
    • Rubinstein, N.D.1    Mayrose, I.2    Martz, E.3    Pupko, T.4
  • 15
    • 34248371273 scopus 로고    scopus 로고
    • Predicting protein-protein interactions based only on sequences information
    • 10.1073/pnas.0607879104, 1838603, 17360525
    • Shen J, Zhang J, Luo X, Zhu W, Yu K, Chen K, Li Y, Jiang H. Predicting protein-protein interactions based only on sequences information. Proc Natl Acad Sci U S A 2007, 104:4337-4341. 10.1073/pnas.0607879104, 1838603, 17360525.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 4337-4341
    • Shen, J.1    Zhang, J.2    Luo, X.3    Zhu, W.4    Yu, K.5    Chen, K.6    Li, Y.7    Jiang, H.8
  • 16
    • 33646195908 scopus 로고    scopus 로고
    • Prediction of cis/trans isomerization in proteins using PSI-BLAST profiles and secondary structure information
    • 10.1186/1471-2105-7-124, 1450308, 16526956
    • Song J, Burrage K, Yuan Z, Huber T. Prediction of cis/trans isomerization in proteins using PSI-BLAST profiles and secondary structure information. BMC Bioinformatics 7:124. 10.1186/1471-2105-7-124, 1450308, 16526956.
    • BMC Bioinformatics , vol.7 , pp. 124
    • Song, J.1    Burrage, K.2    Yuan, Z.3    Huber, T.4
  • 17
    • 33750378680 scopus 로고    scopus 로고
    • Predicting residue-wise contact orders in proteins by support vector regression
    • 10.1186/1471-2105-7-425, 1618864, 17014735
    • Song J, Burrage K. Predicting residue-wise contact orders in proteins by support vector regression. BMC Bioinformatics 2006, 7:425. 10.1186/1471-2105-7-425, 1618864, 17014735.
    • (2006) BMC Bioinformatics , vol.7 , pp. 425
    • Song, J.1    Burrage, K.2
  • 18
    • 25444509811 scopus 로고    scopus 로고
    • Bcipep: a database of B-cell epitopes
    • 10.1186/1471-2164-6-79, 1173103, 15921533
    • Saha S, Bhasin M, Raghava GP. Bcipep: a database of B-cell epitopes. BMC Genomics 2005, 6:79. 10.1186/1471-2164-6-79, 1173103, 15921533.
    • (2005) BMC Genomics , vol.6 , pp. 79
    • Saha, S.1    Bhasin, M.2    Raghava, G.P.3
  • 19
    • 62849118051 scopus 로고    scopus 로고
    • Computational identification of protein methylation sites through bi-profile Bayes feature extraction
    • 10.1371/journal.pone.0004920, 2654709, 19290060
    • Shao J, Xu D, Tsai SN, Wang Y, Ngai SM. Computational identification of protein methylation sites through bi-profile Bayes feature extraction. PLoS One 2009, 4:e4920. 10.1371/journal.pone.0004920, 2654709, 19290060.
    • (2009) PLoS One , vol.4
    • Shao, J.1    Xu, D.2    Tsai, S.N.3    Wang, Y.4    Ngai, S.M.5
  • 20
    • 77951972791 scopus 로고    scopus 로고
    • Cascleave: towards more accurate prediction of caspase substrate cleavage sites
    • 10.1093/bioinformatics/btq043, 20130033
    • Song J, Tan H, Shen H, Mahmood K, Boyd SE, Webb GI, Akutsu T, Whisstock JC. Cascleave: towards more accurate prediction of caspase substrate cleavage sites. Bioinformatics 2010, 26:752-760. 10.1093/bioinformatics/btq043, 20130033.
    • (2010) Bioinformatics , vol.26 , pp. 752-760
    • Song, J.1    Tan, H.2    Shen, H.3    Mahmood, K.4    Boyd, S.E.5    Webb, G.I.6    Akutsu, T.7    Whisstock, J.C.8
  • 22
    • 38549097071 scopus 로고    scopus 로고
    • The Universal Protein Resource (Uniprot)
    • 10.1093/nar/gkn141, 2238893, 18045787, The UniProt Consortium
    • The UniProt Consortium The Universal Protein Resource (Uniprot). Nucleic Acids Res 2008, 36:D190-D195. 10.1093/nar/gkn141, 2238893, 18045787, The UniProt Consortium.
    • (2008) Nucleic Acids Res , vol.36
  • 23
    • 0003710380 scopus 로고    scopus 로고
    • LIBSVM: a library for support vector machines
    • Chang CC, Lin CJ. LIBSVM: a library for support vector machines. , http://www.csie.ntu.edu.tw/~cjlin/libsvm
    • Chang, C.C.1    Lin, C.J.2
  • 24
    • 27144489164 scopus 로고    scopus 로고
    • A tutorial on support vector machines for pattern recognition
    • Burges CJC. A tutorial on support vector machines for pattern recognition. Data Mining and Knowledge Discovery 1998, 2:121-167.
    • (1998) Data Mining and Knowledge Discovery , vol.2 , pp. 121-167
    • Burges, C.J.C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.