Basin-scale population genetic structure of the planktonic copepod Calanus finmarchicus in the North Atlantic Ocean

Progress in Oceanography

Volumn 87, Issue 1-4, 2010, Pages 175-185

  Unal, Ebru ^a   Bucklin, Ann ^a  

^a UNIVERSITY OF CONNECTICUT   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALLELIC VARIATION; AMP-ACTIVATED PROTEIN KINASE; ARLEQUIN; ATLANTIC OCEAN; BARENTS SEA; CALANOID COPEPODS; CALANUS FINMARCHICUS; CITRATE SYNTHASE; GENE FLOWS; GENETIC DIFFERENTIATION; GEOGRAPHIC VARIATION; HEAT-SHOCK PROTEIN; HIGHER RESOLUTION; LIFE HISTORY; MARINE INVERTEBRATES; MOLECULAR VARIATION; NORTH ATLANTIC OCEAN; NUCLEAR PROTEINS; OCEAN GYRES; POPULATION GENETIC ANALYSIS; POPULATION GENETIC STRUCTURE; REPRODUCTIVE ISOLATION; SINGLE NUCLEOTIDES;

ENZYME ACTIVITY; GENES; OCEAN CURRENTS; PROTEINS;

POPULATION STATISTICS;

CRUSTACEAN; GENE FLOW; GENETIC DIFFERENTIATION; GENETIC DRIFT; GENETIC STRUCTURE; GEOGRAPHICAL VARIATION; GYRE; LIFE HISTORY TRAIT; PELAGIC ENVIRONMENT; PROTEIN; REPRODUCTIVE ISOLATION; SUBARCTIC REGION; VARIANCE ANALYSIS; ZOOPLANKTON;

ARCTIC OCEAN; ATLANTIC OCEAN; ATLANTIC OCEAN (NORTH); BARENTS SEA;

CALANOIDA; CALANUS FINMARCHICUS; COPEPODA; INVERTEBRATA;

EID: 78649777093     PISSN: 00796611     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.pocean.2010.09.017     Document Type: Article

References (71)

1. Aksnes D.L., Blindheim J. Circulation patterns in the North Atlantic and the possible impact on the populations of Calanus finmarchicus. Ophelia 1996, 44:7-28.
2. Astthorsson O.S., Gislason A. Long-term changes in zooplankton biomass in Icelandic waters in spring. ICES Journal of Marine Science 1995, 52:657-668.
3. Avise J.C., Ball R.M., Arnold J. Current versus historical population sizes in vertebrate species with high gene flow: a comparison based on mitochondrial DNA lineages and inbreeding theory for neutral mutations. Molecular Biology and Evolution 1988, 5:331-344.
4. Bamsted U., Tande K. Physiological responses of Calanus finmarchicus and Metridia longu (Copepoda: Calanoida) during the winter-spring transition. Marine Biology 1988, 99:31-38.
5. Brumfield R.T., Beerli P., Nickerson D.A., Edwards S.V. The utility of single nucleotide polymorphisms in inference of population history. TREE 2003, 18:249-256.
6. Bucklin A. Methods for population genetic analysis of zooplankton. International Council for the Exploration of the Sea 2000, 533-570. Academic Press, London, (Chapter 11).
7. Bucklin A., Kocher T.D. Source regions for recruitment of Calanus finmarchicus to Georges Bank: evidence from molecular population genetic analysis of mtDNA. Deep-Sea Research 1996, 43:1665-1682.
8. Bucklin A., Sundt R., Dahle G. Population genetics of Calanus finmarchicus in the North Atlantic. Ophelia 1996, 44:29-45.
9. Bucklin, A., Unal, E., Wiebe, P.H., Copley, N.J., 2004. Interannual variation of population genetic diversity of Calanus finmarchicus (Copepoda, Calanoida) in the Gulf of Maine, Northwest Atlantic. ICES CM 2004. Physical-biological Interactions: Experiments, Models and Observation (P).
10. Bucklin A., Wiebe P.H. Low mitochondrial diversity and small effective population sizes of the copepods, Calanus finmarchicus and Nannocalanus minor: possible impact of climatic variation during recent glaciation. Journal of Heredity 1998, 89:383-392.
11. Bucklin A., Wiebe P.H., Astthorsson O.S., Gislason A., Allen L.D., Smolenack S.B. Population genetic variation of C. finmarchicus in Icelandic waters preliminary evidence of genetic differences between Atlantic and Polar populations. ICES Journal of Marine Research 2000, 57:1592-1604.
12. Campbell R.G., Wagner M.M., Teegarden G.J., Boudreau C.A., Durbin E.G. Growth and development rates of the copepod Calanus finmarchicus reared in the laboratory. Marine Ecology Progress Series 2001, 221:161-183.
13. Chen X., Sullivan P. Single nucleotide polymorphism genotyping: biochemistry, protocol, cost and throughput. Pharmacogenomics Journal 2003, 3(2):77-96.
14. Collins F.S. A DNA polymorphism discovery resource for research on human genetic variation. Genome Research 1998, 8:1229-1231.
15. Conrad D., Jakobsson M., Coop G., Wen X., Wall J., Rosenberg N., Pritchard J. A worldwide survey of haplotype variation and linkage disequilibrium in the human genome. Nature Genetics 2006, 38:251-1260.
16. Durbin E.G., Garrahan P.R., Casas M.C. Abundance and distribution of Calanus finmarchicus on the Georges Bank during 1995 and 1996. ICES Journal of Marine Science 2000, 57(6):1664-1685.
17. Ellingsen I.H., Dalpadado P., Slagstad D., Loeng H. Impact of climatic change on the biological production in the Barents Sea. Climatic Change 2008, 87:155-175.
18. Evanno G., Regnaut S., Goudet J. Detecting the number of clusters of individuals using the software structure: a simulation study. Molecular Ecology 2005, 14:2611-2620.
19. Excoffier L., Laval G., Schneider S. Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 2005, 1:47-50.
20. Gislason A. Life-cycle strategies and seasonal migrations of oceanic copepods in the Irminger Sea. Hydrobiologia 2003, 503:195-209.
21. Gislason A., Astthorsson O.S. Seasonal variations in biomass, abundance and composition of zooplankton in the subarctic waters north of Iceland. Polar Biology 1998, 20:85-94.
22. Gislason A., Astthorsson O.S. Winter distribution, ontogenetic migration and rates of egg production of Calanus finmarchicus southwest of Iceland. ICES Journal of Marine Sciences 2000, 57:1727-1739.
23. Halpin P.M., Sorte C.J., Hofmann G.E., Menge B.A. Patterns of variation in levels of Hsp70 in natural rocky shore populations from microscales to mesoscales. Integrative and Comparative Biology 2002, 42:815-824.
24. Hartl D.L., Clark A.G. Principles of Population Genetics 1997, Sinauer Associates, Sunderland, Massachusetts.
25. Hartl F. Molecular chaperones in cellular protein folding. Nature 1996, 381:571-580.
26. Head E.J.H., Harris L.R., Campbell R.W. Investigations on the ecology of Calanus spp. in the Labrador Sea. I. Relationship between the phytoplankton bloom and reproduction and development of Calanus finmarchicus in spring. Marine Ecology Progress Series 2000, 193:53-73.
27. Heath, M.R., Beare, D.J., Dunn, J., Fraser, J.G., Hay, S.J., Turrell, W.R., 1999. Monitoring the effects of climate change: overwintering abundance of Calanus finmarchicus in the Faroe-Shetland Channel. Fisheries Research Services Report 14/99, 24 pp.
28. Heath M.R., Boyle P.R., Gislason A., Gurney W.S.C., Hay S.J., Head E.J.H., Holmes S., Ingvarsdottir A., Jonasdottir S.H., Lindeque P., Pollard R.T., Rasmussen J., Richards K., Richardson K., Smerdon G., Speirs D. Comparative ecology of over-wintering Calanus finmarchicus in the northern North Atlantic, and implications for life-cycle patterns. ICES Journal of Marine Science 2004, 61:698-708.
29. Hellberg M.E. Gene flow and isolation among populations of marine animals. Annual Review of Ecology, Evolution, and Systematics 2009, 40:291-310.
30. Hirche H.-J. Diapause in the marine copepod, Calanus finmarchicus - a review. Ophelia 1996, 44:71-84.
31. Hirche H.-J. The reproductive biology of the marine copepod, Calanus finmarchicus - a review. Ophelia 1996, 44:111-128.
32. Irigoien X. Vertical distribution and population dynamics of Calanus finmarchicus at station India 59 N, 19 W during the passage of the great salinity anomaly, 1971-1975. Deep-Sea Research I 1999, 47:1-26.
33. Jakobsson M., Rosenberg N. CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 2007, 23:1801-1806.
34. Kaderali L., Deshpande A., Nolan J.P., White P.S. Primer design for multiplexed genotyping. Nucleic Acid Research 2003, 31:1796-1802.
35. Kann L.M., Wishner K. Genetic population structure of the copepod Calanus finmarchicus in the Gulf of Maine: allozyme and amplified mitochondrial DNA variation. Marine Biology 1996, 125:1432-1793.
36. Kemp B.E., Stapleton D., Campbell D.J., Chen Z.-P., Murthy S., Walter M., Gupta A., Adams J.J., Katsis F., van Denderen B., Jennings I.G., Iseli T., Michell B.J., Witters L.A. AMP - activated protein kinase, super metabolic regulator. Biochemical Society 2003, 31:162-168.
37. Li J., Absher D., Tang H., Southwick A., Casto A., Ramachandran S., Cann H., Barsh G., Feldman M., Cavalli-Sforza L., Myers R. Worldwide human relationships inferred from genome-wide patterns of variation. Science 2008, 319:1100-1104.
38. Mann K.H., Lazier J.R.N. Dynamics of Marine Ecosystems. Biological-Physical Interactions in the Oceans 1991, Blackwell Scientific Publications, Oxford, 466 pp.
39. Melle W., Skjoldal H. Reproduction and development of Calanus finmarchicus, C. glacialis and C. hyperboreus in the Barents Sea. Marine Ecology Progress Series 1998, 169:211-228.
40. Morin P., Luikart G., Wayne R. SNP workshop Group: SNPs in ecology, evolution and conservation. TREE 2004, 19:208-216.
41. Nordborg M., Hu T.T., Ishino Y., Jhaveri J., Toomajian C., Zheng H.G., Bakker E., Calabrese P., Gladstone J., Goyal R., Jakobsson M., Kim S., Morozov Y., Padhukasahasram B., Plagnol V., Rosenberg N.A., Shah C., Wall J.D., Wang J., Zhao K.Y., Kalbfleisch T., Schulz V., Kreitman M., Bergelson J. The pattern of polymorphism in Arabidopsis thaliana. Plos Biology 2005, 3:1289-1299.
42. Oliveira, L., 2006. The thermal and caloric induced stress response of Calanus finmarchicus. Honors Thesis, University of Hawaii at Manoa, Honolulu, Hawaii.
43. Ottersen G., Planque B., Belgrano A., Post E., Reid P.C., Stenseth N.C. Ecological effects of the North Atlantic oscillation. Oecologia 2001, 128:1-14.
44. Parsell D.A., Lindquist S. The function of heat-shock proteins in stress tolerance: degradation and reactivation of damaged proteins. Annual Review of Genetics 1993, 27:437-496.
45. Peakall R., Smouse P.E. GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes 2006, 6:288-295.
46. Planque B., Batten S. Calanus finmarchicus in the North Atlantic: the year of Calanus in the context of interdecadal change. ICES Journal of Marine Science 2000, 57:1528-1535.
47. Planque B., Fromentin J.M. Calanus and environment in the eastern North Atlantic. I. Spatial and temporal patterns of C. finmarchicus and C. helgolandicus. Marine Ecology Progress Series 1996, 134:101-109.
48. Planque B., Hays G.C., Ibanez F., Gamble J.C. Large scale spatial variations in the seasonal abundance of Calanus finmarchicus. Deep-Sea Research 1997, 44:315-326.
49. Planque B., Ibanez F. Long-term time series in Calanus finmarchicus abundance - a question of space?. Oceanologica Acta 1997, 20:159-164.
50. Pritchard J., Stephens M., Donnelly P. Inference of population structure using multilocus genotype data. Genetics 2000, 155:945-959.
51. Pritchard J.K., Wena X., Falush D. Documentation for Structure Software: Version 2.3 2009, University of Chicago, Department of Human Genetics.
52. Provan J., Beatty G., Keating S., Maggs C., Savidge G. High dispersal potential has maintained long-term population stability in the North Atlantic copepod Calanus finmarchicus. Proceedings of the Royal Society of London Series B 2008, 276:301-307.
53. Provan J., Beatty G., Maggs C., Savidge G. Expressed sequence tag-derived microsatellites for the cool-water marine copepod Calanus finmarchicus. Molecular Ecology Notes 2007, 7:1369-1371.
54. Raymond M., Rousset F. GENEPOP, version 1.2: population genetics software for exact tests and ecumenicism. Journal of Heredity 1995, 86:248-249.
55. Rogers J.C., Wang S.-H., Coleman J.S.M. Evaluation of a long-term (1882-2005) equivalent temperature time series. Journal of Climate 2007, 20:4476-4485.
56. Rosenberg N. Distruct: a program for the graphical display of population structure. Molecular Ecology Notes 2004, 4:137-138.
57. Rossby T., Prater M.D., Zhang H.-M., Anderson-Fontana S., Perez-Brunius P., Lazarevish P., Bower A.S., Richardson P.L., Hunt D. Warm-water pathways in the subpolar North Atlantic: some case studies. International WOCE Newsletter 2000, 38:17-19, 23.
58. Rousset F. Genepop'007: a complete re-implementation of the Genepop software for Windows and Linux. Molecular Ecology Resources 2008, 8:103-106.
59. Runge J.A. Should we expect a relationship between primary production and fisheries? The role of copepod dynamics as a filter of trophic variability. Hydrobiologia 1988, 167(168):61-71.
60. Ryman N., Palm S. POWSIM: a computer program for assessing statistical power when testing for genetic differentiation. Molecular Ecology Notes 2006, 6:600-602.
61. Slade R., Moritz C., Heidman A., Hale P. Rapid assessment of single-copy nuclear-DNA variation in diverse species. Molecular Ecology 1993, 2:359-373.
62. Tajima F. Evolutionary relationship of DNA sequences in finite populations. Genetics 1983, 105:437-460.
63. Tande K., Hassel A., Slagstad D. Gonad maturation and possible life cycle strategies in Calanus finmarchicus and Calanus glacialis in the north-western part of the Barents Sea. Marine Biology of Polar Regions and Effects of Stress on Marine Organisms 1985, 141-155. Wiley, New York. J.S. Gray, M.E. Christiansen (Eds.).
64. Tande K.S. Calanus in north Norwegian fjords and in the Barents Sea. Polar Research 1991, 10:389-407.
65. Unal, E., Bucklin, A., Beaudet, J.G., Wiebe, P.H., 2005. Genetic diversity of the sub-Arctic copepod, Calanus finmarchicus: interannual variation of populations in the Gulf of Maine, Northwest Atlantic. In: Climate Variability and Sub-Arctic Marine Ecosystems, GLOBEC Symposium on Ecosystem Studies of Subarctic Seas. Victoria, BC, Canada.
66. Valdimarsson H., Malmberg S.A. Near-surface circulation in Icelandic waters derived from satellite tracked drifters. Rit Fiskideildar 1999, 16:23-39.
67. Voznesensky M., Lenzc P.H., Spanings-Pierrot C., Towle D.W. Genomic approaches to detecting thermal stress in Calanus finmarchicus (Copepoda: Calanoida). Journal of Experimental Marine Biology and Ecology 2004, 37:46.
68. Weir B.S. Genetic Data Analysis II 1996, Sinauer Associates, Sunderland, MA.
69. Wiebe P.H., Beardsley R.C., Bucklin A.C., Mountain D.G. Coupled biological and physical studies of plankton populations: georges bank and related North Atlantic regions. Deep-Sea Research II 2001, 48:1-2.
70. Wiebe P.H., Morton A.W., Bradley A.M., Backus R.H., Craddock J.E., Barber V., Cowles T.J., Flierl G.R. New developments in the MOCNESS, an apparatus for sampling zooplankton and micronekton. Marine Biology 1985, 87:313-323.
71. Zhang D.X., Hewitt G.M. Nuclear DNA analyses in genetic studies of populations: practice, problems and prospects. Molecular Ecology 2003, 12:563-584.