Taxonomy of Pseudomonas syringae

Journal of Plant Pathology

Volumn 92, Issue 1 SUPPL., 2010, Pages

  Young, J M ^a  

^a LANDCARE RESEARCH   (New Zealand)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS); PSEUDOMONAS; PSEUDOMONAS SYRINGAE;

EID: 78649772089     PISSN: 11254653     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review

References (59)

1. Anzai Y., Kim H.H., Park J-K., Wakabayashi H., Oyaizu H., 2000. Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence. International Journal of Systematic and Evolutionary Microbiology 50: 1563-1589.
2. Bereswill S., Bugert P., Volksch B., Ullrich M., Bender C.L., Geider K., 1994. Identification and relatedness of coronatine- producing Pseudomonas syringae pathovars by PCR analysis and sequence determination of the amplification products. Applied and Environmental Microbiology 60: 2924-2930.
3. Bradbury J.F., 1986. Guide to Plant Pathogenic Bacteria, CAB International Mycological Institute, Kew, UK.
4. Brosch R., Lefèvre M., Grimont F., Grimont P.A.D., 1996. Taxonomic diversity of pseudomonads revealed by computer interpretation of ribotyping data. Systematic and Applied Microbiology 19: 541-555.
5. Buchanan R.E., Holt J.G., Lessel E.F., 1966. Index Bergeyana. Williams and Wilkins, Baltimore, MD, USA.
6. Burkholder W.H., Starr M.P., 1948. The generic and specific characters of phytopathogenic species of Pseudomonas and Xanthomonas. Phytopathology 38: 494-502.
7. Doudoroff M., Palleroni N.J., 1974. Genus 1. Pseudomonas Migula 1894, 237. In: Buchanan R.E., Gibbons N.E. (eds). Bergey's Manual of Determinative Bacteriology, 8th edition. pp. 217-243. Williams and Wilkins, Baltimore, MD, USA.
8. Dye D.W., Bradbury J.F., Goto M., Hayward A.C., Lelliott R.A., Schroth M.N., 1980. International standards for naming pathovars of phytopathogenic bacteria and a list of pathovar names and pathotype strains. Review of Plant Pathology 59: 153-168.
9. Euzéby J.P., 1997-2010. List of bacterial names with standing in nomenclature: a folder available on the internet. International Journal of Systematic Bacteriology 47: 590-592 (List of Prokaryotic names with Standing in Nomenclature / http://www.bacterio.cict.fr/)
10. Gardan L., Bollet C., Abu Ghorrah M., Grimont F., Grimont P.A.D., 1992. DNA relatedness among the pathovar strains of Pseudomonas syringae subsp. savastanoi Janse (1982) and proposal of Pseudomonas savastanoi sp. nov. International Journal of Systematic Bacteriology 42: 606-612.
11. Gardan L., Shafik H., Belouin S., Broch R., Grimont F., Grimon P.A.D., 1999. DNA relatedness among the pathovars of Pseudomonas syringae and description of Pseudomonas tremae sp. nov. and Pseudomonas cannabina sp. nov. (ex Sutic and Dowson 1959). International Journal of Systematic Bacteriology 49: 469-478.
12. Gevers D., Cohan F.M., Lawrence J.G., Spratt B.G., Coenye T., Feil E.J., Stackebrandt E., Van de Peer Y., Vandamme P., Thompson F.L., Swings J., 2005. Re-evaluating prokaryotic species. Nature Reviews, Microbiology 3: 733-739.
13. Gillis M., Vandamme P., De Vos P., Swings J., Kersters K., 2005. Polyphasic taxonomy. In: Brenner D.J., Krieg N.R., Staley J.T. (eds). Bergey's Manual of Systematic Bacteriology - The Proteobacteria, 2nd Edition, Vol. 2A, pp. 43-48. Springer, New York, NY, USA.
14. Grimont P.A.D., Vancanneyt M., Lefèvre M., Vandenmeulebroecke K., Vauterin L., Brosch R., Kersters K., Grimont F., 1996. Ability of Biolog and Biotype 100 systems to reveal the taxonomic diversity of pseudomonads. Systematic and Applied Microbiology 19: 510-527.
15. Hu F.-P., Young J.M., Fletcher M.J., 1998. Preliminary description of biocidal (syringomycin) activity in fluorescent plant pathogenic Pseudomonas species. Journal of Applied
16. Hu F.-P., Young J.M., Fletcher M.J., 1998. Preliminary description of biocidal (syringomycin) activity in fluorescent plant pathogenic Pseudomonas species. Journal of Applied Microbiology 85: 365-371.
17. Janse J.D., Rossi P., Angelucci L., Scortichini M., Derks J.H.J., Akkermans A.D.L., De Vrijer R., Psallidas P.G., 1996. Reclassification of Pseudomonas syringae pv. Avellanae as Pseudomonas avellanae (spec. nov.), the bacterium causing canker of hazelnut (Corylus avellana L.). Systematic and Applied Microbiology 19: 589-595.
18. Lapage S.P., Sneath P.H.A., Lessel E.F., Skerman V.B.D., Seeliger H.P.R., Clark W.A., 1975. International Code of Nomenclature of Bacteria, 1976 Revision, American Society for Microbiology, Washington, DC, USA.
19. Lapage S.P., Sneath P.H.A., Lessel E.F., Skerman V.B.D., Seeliger H.P.R., Clark W.A., 1992. International Code of Nomenclature of Bacteria, 1990 Revision, American Society for Microbiology, Washington, DC, USA.
20. Lelliott R.A., Billing E., Hayward A.C., 1966. A determinative scheme for the fluorescent plant pathogenic pseudomonads. Journal of Applied Bacteriology 29: 47-489.
21. Lindström K., Martínez-Romero M.E., 2005. International Committee on Systematics of Prokaryotes - Subcommittee on the taxonomy of Agrobacterium and Rhizobium. International Journal of Systematic and Evolutionary Microbiology 55: 1383.
22. Martens M., Dawyndt P., Coopman R., Gillis M., De Vos P., Willems A., 2008. Advantages of multilocus sequence analysis for taxonomic studies: a case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium). International Journal of Systematic and Evolutionary Microbiology 58: 200-214.
23. Ménard M., Sutra L., Luisetti J., Prunier J.P., Gardan L., 2003. Pseudomonas syringae pv. avii (pv. nov.), the causal agent of bacterial canker of wild cherries (Prunus avium) in France. European Journal of Plant Pathology 109: 565-576.
24. Migula W., 1894. Über ein neues System der Bakterien. Arbeiten aus dem Bakteriologischen Institut der Technischen Hochschule zu Karlsruhe 1: 235-238.
25. Murray R.G.E., Brenner D.J., Colwell R.R., De Vos P., Goodfellow M., Grimont P.A.D., Pfennig N., Stackebrandt E., Zarvarzin G.A., 1990. Report of the ad hoc committee on approaches to taxonomy within the Proteobacteria. International Journal of Systematic Bacteriology 40: 213-215.
26. Murray R.G.E., Stackebrandt E., 1995. Taxonomic note: implementation of the provisional status Candidatus for incompletely described procaryotes. International Journal of Systematic Bacteriology 45: 186-187.
27. Palacio-Bielsa A., Cambra M.A., López M.M., 2009. PCR detection and identification of plant-pathogenic bacteria: updated review of protocols (1989-2007). Journal of Plant Pathology 91: 249-297.
28. Palleroni N.J., Ballard R.W., Ralston E., Doudoroff M., 1972. Deoxyribonucleic acid homologies among some Pseudomonas species. Journal of Bacteriology 110: 1-11.
29. Palleroni N.J., 2005. Genus I. Pseudomonas Migula 1894, 237AL. In: Brenner D.J., Krieg N.R., Staley J.T. (eds). Bergey's Manual of Systematic Bacteriology, 2nd edition. Vol. 2 The Proteobacteria, Part B The Gammaproteobacteria, pp. 323-79;. Springer, New York, NY, USA.
30. Pecknold P.C., Grogan R.G., 1973. Deoxyribonucleic acid homology groups among phytopathogenic Pseudomonas species. International Journal of Systematic Bacterioogy 23: 111-121.
31. Peix A., Ramírez-Bahena M.-H., Velázquez E., 2009. Historical evolution and current status of the taxonomy of genus Pseudomonas. Infection, Genetics and Evolution 9: 1132- 1147.
32. Sands D.C., Schroth M.N., Hildebrand D.C., 1970. Taxonomy of phytopathogenic pseudomonads. Journal of Bacteriology 101: 9-23.
33. Sarkar S.F., Guttman D.S., 2004. Evolution of the core genome of Pseudomonas syringae, a highly clonal, endemic plant pathogen. Applied and Environmental Microbiology 70: 1999-2012.
34. Skerman V.B.D., McGowan V., Sneath P.H.A., 1980. Approved lists of bacterial names. International Journal of Systematic Bacteriology 30: 225-420.
35. Stackebrandt E., Frederiksen W., Garrity G.M., Grimont P.A.D., Kampfer P., Maiden M.C.J., Nesme X., Rosselló Mora R., Swings J., Truper H.G., Vauterin L., Ward A.C., Whitman W.B., 2002. Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. International Journal of Systematic and Evolutionary Microbiology 52: 1043-1047.
36. Stanie R.Y., Palleron N.J., Doudorof M., 1966. The aerobic pseudomonads: a taxonomic study. Journal of General Microbiology 43: 159-271.
37. Stead D.E., 1990. Evaluation of cellular fatty acid profiles for rapid identification of plant pathogenic bacteria. Proceedings 7th International Conference on Plant Pathogenic Bacteria, Budapest, 1989: 483-490.
38. Stead D.E., 1992. Grouping of plant-pathogenic and some other Pseudomonas spp. by using cellular fatty acid profiles. International Journal of Systematic Bacteriology 42: 281-295.
39. Stolp H., Starr M.P., Baigent N.L., 1965. Problems in speciation of phytopathogenic pseudomonads and xanthomonads. Annual Review of Phytopathology 3: 231-264.
40. Tesar M., Hoch C., Moore E.R.B., Timmis K.N., 1996. Westprinting: development of a rapid immunochemical identification for species within the genus Pseudomonas sensu stricto. Systematic and Applied Microbiology 19: 577-588.
41. Tindall B.J., Rosselló Móra R., Busse H.-J., Ludwig W., Kämpfer P., 2010. Notes on the characterization of prokaryote strains for taxonomic purposes. International Journal of Systematic and Evolutionary Microbiology 60: 249-266.
42. Ursing J.B., Rosselló-Mora R.A., García-Valdés E., Lalucat J., 1995. Taxonomic note: a pragmatic approach to the nomenclature of phenotypically similar genomic groups. International Journal of Systematic Bacteriology 45: 604.
43. Vancanneyt M., Witt S., Abraham W.-R., Kersters K., Fredrickson H.L., 1996a. Fatty acid content in whole-cell hydrolysates and phospholipid fractions of pseudomonads: a taxonomic evaluation. Systematic and Applied Microbiology 19: 528-540.
44. Vancanneyt M., Torck U., Dewettinck D., Vaerewijck M., Kersters K., 1996b. Grouping of pseudomonads by SDSPAGE of whole cell proteins. Systematic and Applied Microbiology 19: 556-568.
45. Vandamme P., Pot B., Gillis M., De Vos P., Kersters K., Swings J., 1996. Polyphasic taxonomy, a consensus approach to bacterial systematics. Microbiological reviews 60: 407-438.
46. Vauterin L., Hoste B., Kersters K., Swings J., 1995. Reclassification of Xanthomonas. International Journal of Systematic and Evolutionary Microbiology 45: 472-489.
47. Vauterin L., Swings J., 1997. Are classification and phytopathological diversity compatible in Xanthomonas? Journal of Industrial Microbiology and Biotechnology 19: 77-82.
48. Wayne L.G., Brenner D.J., Colwell R.R., Grimont P.A.D., Kandler O., Krichevsky M.I., Moore L.H., Moore W.E.C., Murray R.G.E., Stackebrandt E., Starr M.P., Trüper H.G., 1987. Report of the ad hoc committee on the reconciliation of approaches to bacterial systematics. International Journal of Systematic Bacteriology 37: 463-64.
49. Weller S.A., Aspin A., Stead D.E., 2000. Classification and identification of plant-associated bacteria by fatty acid profiling. Bulletin OEPP 30: 375-380.
50. Yamamoto S., Kasai H., Arnold D.L., Jackson R.W., Vivian A., Harayama S., 2000. Phylogeny of the genus Pseudomonas: intrageneric structure reconstructed from the nucleotide sequences of gyrB and rpoD genes. Microbiology 146: 2385-2394.
51. Young J.M., Dye D.W., Bradbury J.F., Panagopoulos C.G., Robbs C.F., 1978. A proposed nomenclature and classification for plant pathogenic bacteria. New Zealand Journal of Agricultural Research 21: 153-177.
52. Young J.M., 1991. Pathogenicity and identification of the lilac pathogen, Pseudomonas syringae pv. syringae van Hall 1902. Annals of Applied Biology 118: 283-298.
53. Young J.M., 1992. Pseudomonas syringae pv. japonica (Mukoo 1955) Dye et al. 1980 is a junior synonym of P. syringae pv. syringae van Hall 1902. Letters in Microbiology 15: 129-130.
54. Young J.M., Takikawa Y., Gardan L., Stead D.E., 1992. Changing concepts in the taxonomy of plant pathogenic bacteria. Annual. Review of Phytopathology 30: 67-105.
55. Young J.M., Fletcher M.J., 1994. Pseudomonas syringae pv. panici (Elliott 1923) Young, Dye & Wilkie 1978 is a doubtful name. Australasian Plant Pathology 23: 66-68.
56. Young J.M., Triggs C.M., 1994. Evaluation of determinative tests for pathovars of Pseudomonas syringae van Hall 1902. Journal of Applied Bacteriology 77: 195-207.
57. Young J.M., 2000. Recent systematics developments and implications for plant pathogenic bacteria. In: Priest F.G., Goodfellow M. (eds) pp. 133-160. Applied Microbial Systematics. Chapman and Hall, London.
58. Young J.M., 2008. An overview of bacterial nomenclature with special reference to plant pathogens. Systematic and Applied Microbiology 31: 405-424.
59. Young J.M., Wilkie J.P., Park D-C., Watson D.R.W., 2010. New Zealand strains of plant pathogenic bacteria classified by multi-locus sequence analysis; proposal of Xanthomonas dyei sp. nov. Plant Pathology. 59: 270-281.