New Zealand strains of plant pathogenic bacteria classified by multi-locus sequence analysis; proposal of Xanthomonas dyei sp. nov.

Plant Pathology

Volumn 59, Issue 2, 2010, Pages 270-281

  Young, J M ^a   Wilkie, J P ^a   Park, D C ^a   Watson, D R W ^b  

^a LANDCARE RESEARCH   (New Zealand)

^b NONE   (New Zealand)

Author keywords

Bacteria; Diversity; MLSA; Pathogenicity; Plant pathogen; Taxonomy

Indexed keywords

ADAPTATION; BACTERIUM; ENDEMIC SPECIES; ESTER; FATTY ACID; GENETIC ANALYSIS; HOST PLANT; INTRODUCED SPECIES; NEW SPECIES; PATHOGENICITY; PHYLOGENETICS; PHYLOGEOGRAPHY; TAXONOMY;

ARALIA; BACTERIA (MICROORGANISMS); DIOSPYROS; DYSOXYLUM; DYSOXYLUM SPECTABILE; ERIOSTEMON; EUCALYPTUS; HARDENBERGIA; LIQUIDAMBAR; MAGNOLIA; MAGNOLIACEAE; MAHONIA; METROSIDEROS; PSEUDOMONAS SYRINGAE; PSEUDOMONAS SYRINGAE PV. DYSOXYLI; XANTHOMONAS; XANTHOMONAS ARBORICOLA; XANTHOMONAS CAMPESTRIS;

EID: 77950932733     PISSN: 00320862     EISSN: 13653059     Source Type: Journal    
DOI: 10.1111/j.1365-3059.2009.02210.x     Document Type: Article

References (34)

1. Bradbury JF. Guide to the Plant Pathogenic Bacteria 1986, Kew, UK, CAB International Mycological Institute
2. Burkholder WH, Starr MP. The generic and specific characters of phytopathogenic species of Pseudomonas and Xanthomonas. Phytopathology 1948, 38:494-502.
3. Dye DW. The inadequacy of the usual determinative tests for the identification of Xanthomonas spp. New Zealand Journal of Science 1962, 5:393-416.
4. Dye DW. A bacterial disease of pukatea (Laurelia novae-zelandiae A. Cunn.) caused by Xanthomonas laureliae. New Zealand Journal of Science 1963, 6:179-85.
5. Dye DW, Bradbury JF, Goto M, Hayward AC, Lelliott RA, Schroth MN. International standards for naming pathovars of phytopathogenic bacteria and a list of pathovar names and pathotype strains. Review of Plant Pathology 1980, 59:153-68.
6. Fahy PC, Hayward AC. Media and methods for isolation and diagnostic tests. Plant Bacterial Diseases - A Diagnostic Guide 1983, 337-8. Fahy PC, Persley GJ. In, eds, Sydney, Australia, Academic Press
7. Gevers D, Cohan FM, Lawrence JG. Re-evaluating prokaryotic species. Nature Reviews, Microbiology 2005, 3:733-9.
8. Hauben H, Vauterin V, Swings J, Moore ER. Comparison of 16S ribosomal DNA sequences of all Xanthomonas species. International Journal of Systematic Bacteriology 1997, 47:328-35.
9. Hutchinson PB. A bacterial disease of Dysoxylum spectabile caused by the pathogen Pseudomonas dysoxyli n. sp. New Zealand Journal of Science and Technology B 1949, 30:274-86.
10. Hwang MSH, Morgan RL, Sarkar SF, Wang PW, Guttman DS. Phylogenetic characterization of virulence and resistance phenotypes of Pseudomonas syringae. Applied and Environmental Microbiology 2005, 71:5182-91.
11. King EO, Ward MK, Raney DE. Two simple media for the demonstration of pyocyanin and fluorescein. Journal of Laboratory and Clinical Medicine 1954, 44:301-7.
12. Lapage SP, Sneath PHA, Lessel EF, Skerman VBD, Seeliger HPR, Clark WA. International Code of Nomenclature of Bacteria, 1990 Revision, Bacteriological Code 1992, Washington, DC, USA, American Society for Microbiology
13. Lovrekovich L, Klement Z. Triphenyltetrazolium chloride tolerance in phytopathogenic bacteria. Phytopathologische Zeitschrift 1960, 39:129-33.
14. Maiden MJC, Bygraves JA, Feil E. Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proceedings of the National Academy of Sciences, USA 1998, 95:3140-5.
15. Martens M, Delaere M, Coopman R, De Vos P, Gillis M, Willems A. Multilocus sequence analysis of Ensifer and related taxa. International Journal of Systematic and Evolutionary Microbiology 2007, 57:489-503.
16. Parkinson N, Cowie C, Heeney J, Stead D. Phylogenetic structure of Xanthomonas determined by comparison of gyrB sequences. International Journal of Systematic and Evolutionary Microbiology 2009, 59:264-74.
17. Pennycook SR, Young JM, Fletcher MJ. Bacterial plant diseases recorded in New Zealand. Plant Diseases Recorded in New Zealand Vol. 3 1989, 25-83. Pennycook SR, In, ed, Auckland, New Zealand, Plant Diseases Division, DSIR
18. Rademaker JLW, Louws FJ, Schultz MH. A comprehensive species to strain taxonomic framework for Xanthomonas. Phytopathology 2005, 95:1098-111.
19. Sarkar SF, Guttman DS. Evolution of the core genome of Pseudomonas syringae, a highly clonal, endemic plant pathogen. Applied and Environmental Microbiology 2004, 70:1999-2012.
20. Scally M, Schuenzel EL, Stouthamer R, Nunney L. Multilocus sequence type system for the plant pathogen Xylella fastidiosa and relative contributions of recombination and point mutation to clonal diversity. Applied and Environmental Microbiology 2005, 71:8491-9.
21. Sneath PHA. Analysis and interpretation of sequence data for bacterial systematics: the view of a numerical taxonomist. Applied and Environmental Microbiology 1989, 12:15-31.
22. Stackebrandt E, Frederiksen W, Garrity GM. Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. International Journal of Systematic and Evolutionary Microbiology 2002, 52:1043-7.
23. Stevens G, McGlone M, McCulloch B. Prehistoric New Zealand 1988, Auckland, New Zealand, Heinemann Reed
24. Stolp H, Starr MP, Baigent NL. Problems in speciation of phytopathogenic pseudomonads and xanthomonads. Annual Review of Phytopathology 1965, 3:231-64.
25. Taylor RK, Hale CN, Hartill WFT. A stem canker disease of olive (Olea europaea) in New Zealand. New Zealand Journal of Crop and Horticultural Science 2001, 29:219-28.
26. Truman R. Die-back of Eucalyptus citriodora caused by Xanthomonas eucalypti sp. n. Phytopathology 1974, 64:143-4.
27. Vauterin L, Swings. Are classification and phytopathological diversity compatible in Xanthomonas? Journal of Industrial Microbiology and Biotechnology 1997, 19:77-82.
28. Vauterin L, Hoste B, Kersters K, Swings J. Reclassification of Xanthomonas. International Journal of Systematic Bacteriology 1995, 45:472-89.
29. Vauterin L, Yang P, Swings J. Utilization of fatty acid methyl esters for differentiation of new Xanthomonas spp. International Journal of Systematic Bacteriology 1996, 46:298-304.
30. Young JM. Xanthomonas pruni in almond in New Zealand. New Zealand Journal of Agricultural Research 1977, 20:105-7.
31. Young JM. Pathogenicity and identification of the lilac pathogen, Pseudomonas syringae pv. syringae van Hall 1902. Annals of Applied Biology 1991, 118:283-98.
32. Young JM. An overview of bacterial nomenclature with special reference to plant pathogens. Systematic and Applied Microbiology 2008, 31:405-24.
33. Young JM, Dye DW, Bradbury JF, Panagopoulos CG, Robbs CF. A proposed nomenclature and classification for plant pathogenic bacteria. New Zealand Journal of Agricultural Research 1978, 21:153-77.
34. Young JM, Park DC, Shearman HM, Fargier E. A multi-locus sequence analysis of Xanthomonas. Systematic and Applied Microbiology 2008, 31:366-77.