메뉴 건너뛰기




Volumn 402, Issue 1, 2010, Pages 40-46

Trinucleotide repeat system for sequence specificity analysis of RNA structure probing reagents

Author keywords

Lead ions; Nuclease; Ribonuclease; RNA cleavage; RNA structure probing; Triplet repeat RNA

Indexed keywords

ESTERS; IONS; NUCLEOTIDES; PLANTS (BOTANY); REAGENTS; RNA;

EID: 77952743763     PISSN: 00032697     EISSN: 10960309     Source Type: Journal    
DOI: 10.1016/j.ab.2010.03.021     Document Type: Article
Times cited : (8)

References (20)
  • 1
    • 0344320243 scopus 로고    scopus 로고
    • Classical and novel chemical tools for RNA structure probing
    • Elsevier Science, Amsterdam, D. Soll, S. Nishimura, P.B. Moore (Eds.)
    • Giege R., Helm M., Florentz C. Classical and novel chemical tools for RNA structure probing. RNA 2001, 71-90. Elsevier Science, Amsterdam. D. Soll, S. Nishimura, P.B. Moore (Eds.).
    • (2001) RNA , pp. 71-90
    • Giege, R.1    Helm, M.2    Florentz, C.3
  • 3
    • 65649135085 scopus 로고    scopus 로고
    • Probing mRNA structure and sRNA-mRNA interactions in bacteria using enzymes and lead(II)
    • Chevalier C., Geissmann T., Helfer A.C., Romby P. Probing mRNA structure and sRNA-mRNA interactions in bacteria using enzymes and lead(II). Methods Mol. Biol. 2009, 540:215-232.
    • (2009) Methods Mol. Biol. , vol.540 , pp. 215-232
    • Chevalier, C.1    Geissmann, T.2    Helfer, A.C.3    Romby, P.4
  • 4
    • 84867812864 scopus 로고    scopus 로고
    • Probing RNA structures with enzymes and chemicals in vitro and in vivo
    • Wiley-VCH, Weinheim, Germany, R.K. Hartmann, A. Schon, E. Westhof (Eds.)
    • Huntzinger E., Winter F., Moine H., Ehresmann C., Romby P. Probing RNA structures with enzymes and chemicals in vitro and in vivo. Handbook of RNA Biochemistry 2005, 151-172. Wiley-VCH, Weinheim, Germany. R.K. Hartmann, A. Schon, E. Westhof (Eds.).
    • (2005) Handbook of RNA Biochemistry , pp. 151-172
    • Huntzinger, E.1    Winter, F.2    Moine, H.3    Ehresmann, C.4    Romby, P.5
  • 5
    • 0024297759 scopus 로고
    • Characterization of the lead(II)-induced cleavages in tRNAs in solution and effect of the Y-base removal in yeast tRNAPhe
    • Krzyzosiak W.J., Marciniec T., Wiewiorowski M., Romby P., Ebel J.P., Giege R. Characterization of the lead(II)-induced cleavages in tRNAs in solution and effect of the Y-base removal in yeast tRNAPhe. Biochemistry 1988, 27:5771-5777.
    • (1988) Biochemistry , vol.27 , pp. 5771-5777
    • Krzyzosiak, W.J.1    Marciniec, T.2    Wiewiorowski, M.3    Romby, P.4    Ebel, J.P.5    Giege, R.6
  • 6
    • 0024564403 scopus 로고
    • Use of lead(II) to probe the structure of large RNAs: conformation of the 3' terminal domain of E. coli 16S rRNA and its involvement in building the tRNA binding sites
    • Gornicki P., Baudin F., Romby P., Wiewiorowski M., Kryzosiak W., Ebel J.P., Ehresmann C., Ehresmann B. Use of lead(II) to probe the structure of large RNAs: conformation of the 3' terminal domain of E. coli 16S rRNA and its involvement in building the tRNA binding sites. J. Biomol. Struct. Dyn. 1989, 6:971-984.
    • (1989) J. Biomol. Struct. Dyn. , vol.6 , pp. 971-984
    • Gornicki, P.1    Baudin, F.2    Romby, P.3    Wiewiorowski, M.4    Kryzosiak, W.5    Ebel, J.P.6    Ehresmann, C.7    Ehresmann, B.8
  • 8
    • 1842406027 scopus 로고    scopus 로고
    • CUG repeats present in myotonin kinase RNA form metastable " slippery" hairpins
    • Napierala M., Krzyzosiak W.J. CUG repeats present in myotonin kinase RNA form metastable " slippery" hairpins. J. Biol. Chem. 1997, 272:31079-31085.
    • (1997) J. Biol. Chem. , vol.272 , pp. 31079-31085
    • Napierala, M.1    Krzyzosiak, W.J.2
  • 9
    • 0142009656 scopus 로고    scopus 로고
    • RNA structure of trinucleotide repeats associated with human neurological diseases
    • Sobczak K., de Mezer M., Michlewski G., Krol J., Krzyzosiak W.J. RNA structure of trinucleotide repeats associated with human neurological diseases. Nucleic Acids Res. 2003, 31:5469-5482.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 5469-5482
    • Sobczak, K.1    de Mezer, M.2    Michlewski, G.3    Krol, J.4    Krzyzosiak, W.J.5
  • 10
    • 4744366210 scopus 로고    scopus 로고
    • Imperfect CAG repeats form diverse structures in SCA1 transcripts
    • Sobczak K., Krzyzosiak W.J. Imperfect CAG repeats form diverse structures in SCA1 transcripts. J. Biol. Chem. 2004, 279:41563-41572.
    • (2004) J. Biol. Chem. , vol.279 , pp. 41563-41572
    • Sobczak, K.1    Krzyzosiak, W.J.2
  • 11
    • 13544270270 scopus 로고    scopus 로고
    • CAG repeats containing CAA interruptions form branched hairpin structures in spinocerebellar ataxia type 2 transcripts
    • Sobczak K., Krzyzosiak W.J. CAG repeats containing CAA interruptions form branched hairpin structures in spinocerebellar ataxia type 2 transcripts. J. Biol. Chem. 2005, 280:3898-3910.
    • (2005) J. Biol. Chem. , vol.280 , pp. 3898-3910
    • Sobczak, K.1    Krzyzosiak, W.J.2
  • 13
    • 3042561985 scopus 로고    scopus 로고
    • Molecular architecture of CAG repeats in human disease related transcripts
    • Michlewski G., Krzyzosiak W.J. Molecular architecture of CAG repeats in human disease related transcripts. J. Mol. Biol. 2004, 340:665-679.
    • (2004) J. Mol. Biol. , vol.340 , pp. 665-679
    • Michlewski, G.1    Krzyzosiak, W.J.2
  • 15
    • 84867812864 scopus 로고    scopus 로고
    • Probing RNA structures with enzymes and chemicals in vitro and in vivo
    • Wiley-VCH, Weinheim, Germany, R.A. Hartmann, A. Schon, E. Westhof (Eds.)
    • Huntzinger E., Winter F., Moine H., Ehresmann C., Romby P. Probing RNA structures with enzymes and chemicals in vitro and in vivo. Handbook of RNA Biochemistry 2005, 151-171. Wiley-VCH, Weinheim, Germany. R.A. Hartmann, A. Schon, E. Westhof (Eds.).
    • (2005) Handbook of RNA Biochemistry , pp. 151-171
    • Huntzinger, E.1    Winter, F.2    Moine, H.3    Ehresmann, C.4    Romby, P.5
  • 16
    • 0021760626 scopus 로고
    • RNA structure analysis using T2 ribonuclease: detection of pH and metal ion induced conformational changes in yeast tRNAPhe
    • Vary C.P., Vournakis J.N. RNA structure analysis using T2 ribonuclease: detection of pH and metal ion induced conformational changes in yeast tRNAPhe. Nucleic Acids Res. 1984, 12:6763-6778.
    • (1984) Nucleic Acids Res. , vol.12 , pp. 6763-6778
    • Vary, C.P.1    Vournakis, J.N.2
  • 17
    • 0020442509 scopus 로고
    • Comparison of transfer ribonucleic acid structures using cobra venom and S1 endonucleases
    • Auron P.E., Weber L.D., Rich A. Comparison of transfer ribonucleic acid structures using cobra venom and S1 endonucleases. Biochemistry 1982, 21:4700-4706.
    • (1982) Biochemistry , vol.21 , pp. 4700-4706
    • Auron, P.E.1    Weber, L.D.2    Rich, A.3
  • 18
    • 0019883175 scopus 로고
    • Partial digestion of tRNA-aminoacyl-tRNA synthetase complexes with cobra venom ribonuclease
    • Favorova O.O., Fasiolo F., Keith G., Vassilenko S.K., Ebel J.P. Partial digestion of tRNA-aminoacyl-tRNA synthetase complexes with cobra venom ribonuclease. Biochemistry 1981, 20:1006-1011.
    • (1981) Biochemistry , vol.20 , pp. 1006-1011
    • Favorova, O.O.1    Fasiolo, F.2    Keith, G.3    Vassilenko, S.K.4    Ebel, J.P.5
  • 19
    • 4744357297 scopus 로고    scopus 로고
    • Structural features of microRNA (miRNA) precursors and their relevance to miRNA biogenesis and small interfering RNA/short hairpin RNA design
    • Krol J., Sobczak K., Wilczynska U., Drath M., Jasinska A., Kaczynska D., Krzyzosiak W.J. Structural features of microRNA (miRNA) precursors and their relevance to miRNA biogenesis and small interfering RNA/short hairpin RNA design. J. Biol. Chem. 2004, 279:42230-42239.
    • (2004) J. Biol. Chem. , vol.279 , pp. 42230-42239
    • Krol, J.1    Sobczak, K.2    Wilczynska, U.3    Drath, M.4    Jasinska, A.5    Kaczynska, D.6    Krzyzosiak, W.J.7
  • 20
    • 0037053410 scopus 로고    scopus 로고
    • Structural determinants of BRCA1 translational regulation
    • Sobczak K., Krzyzosiak W.J. Structural determinants of BRCA1 translational regulation. J. Biol. Chem. 2002, 277:17349-17358.
    • (2002) J. Biol. Chem. , vol.277 , pp. 17349-17358
    • Sobczak, K.1    Krzyzosiak, W.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.