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Volumn 6, Issue 11, 2010, Pages

Analysis of stochastic strategies in bacterial competence: A master equation approach

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; BACTERIOLOGY; CHEMICAL ANALYSIS; CYTOLOGY; NUMERICAL METHODS; SENSITIVITY ANALYSIS; STOCHASTIC SYSTEMS;

EID: 78649637239     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1000985     Document Type: Article
Times cited : (18)

References (24)
  • 1
    • 33748310605 scopus 로고    scopus 로고
    • Different genetic programmes within identical bacteria under identical conditions: The phemenon of bistability greatly modifies our view on bacterial population
    • Graumann P (2006) Different genetic programmes within identical bacteria under identical conditions: the phemenon of bistability greatly modifies our view on bacterial population. Mol Microbiol 61: 560-563.
    • (2006) Mol Microbiol , vol.61 , pp. 560-563
    • Graumann, P.1
  • 2
    • 34547604468 scopus 로고    scopus 로고
    • Noise in gene expression determines cell fate
    • Maamar H, Raj A, Dubnau D (2007) Noise in gene expression determines cell fate. Science 317: 526-529.
    • (2007) Science , vol.317 , pp. 526-529
    • Maamar, H.1    Raj, A.2    Dubnau, D.3
  • 3
    • 0029565061 scopus 로고
    • Genetic networks controlling the initiation of sporulation and the development of genetic competence in bacillus subtilis
    • Grossman A (1995) Genetic networks controlling the initiation of sporulation and the development of genetic competence in bacillus subtilis. Annu Rev Genet 29: 477-508.
    • (1995) Annu Rev Genet , vol.29 , pp. 477-508
    • Grossman, A.1
  • 4
    • 41749107942 scopus 로고    scopus 로고
    • Stochasticity and cell fate
    • Losick R, Desplan C (2008) Stochasticity and cell fate. Science 320: 65-68.
    • (2008) Science , vol.320 , pp. 65-68
    • Losick, R.1    Desplan, C.2
  • 5
    • 0036223625 scopus 로고    scopus 로고
    • Microarray analysis of the bacillus subtilis k-state: Genome-wide expression changes dependent on comk
    • Berka R, Hahn J, Albano M, Draskovic I, Persuh M, et al. (2002) Microarray analysis of the bacillus subtilis k-state: genome-wide expression changes dependent on comk. Mol Microbiol 43: 1331-1345.
    • (2002) Mol Microbiol , vol.43 , pp. 1331-1345
    • Berka, R.1    Hahn, J.2    Albano, M.3    Draskovic, I.4    Persuh, M.5
  • 6
    • 0037261785 scopus 로고    scopus 로고
    • Controlling competence in bacillus subtilis: Shared use of regulators
    • Hamoen L, Venema G, Kuipers O (2003) Controlling competence in bacillus subtilis: shared use of regulators. Microbiology 149: 9-17.
    • (2003) Microbiology , vol.149 , pp. 9-17
    • Hamoen, L.1    Venema, G.2    Kuipers, O.3
  • 7
    • 0036229860 scopus 로고    scopus 로고
    • Whole-genome analysis of genes regulated by the bacillus subtilis competence transcription factor comk
    • Ogura M, Yamaguchi H, Kobayashi K, Ogasawara N, Yasutaro F, et al. (2002) Whole-genome analysis of genes regulated by the bacillus subtilis competence transcription factor comk. J Bacteriol 184: 2344-2351.
    • (2002) J Bacteriol , vol.184 , pp. 2344-2351
    • Ogura, M.1    Yamaguchi, H.2    Kobayashi, K.3    Ogasawara, N.4    Yasutaro, F.5
  • 8
    • 33748058888 scopus 로고    scopus 로고
    • Bistability in bacteria
    • Dubnau D, Losick R (2006) Bistability in bacteria. Mol Microbiol 61: 564-572.
    • (2006) Mol Microbiol , vol.61 , pp. 564-572
    • Dubnau, D.1    Losick, R.2
  • 9
    • 17644414919 scopus 로고    scopus 로고
    • Stripping bacillus: Comk auto-simulation is responsible for the bistable response in competence development
    • Smits W, Eschevins C, Susanna K, Bron S, Kuipers O, et al. (2005) Stripping bacillus: Comk auto-simulation is responsible for the bistable response in competence development. Mol Microbiol 56: 604-614.
    • (2005) Mol Microbiol , vol.56 , pp. 604-614
    • Smits, W.1    Eschevins, C.2    Susanna, K.3    Bron, S.4    Kuipers, O.5
  • 10
    • 24944542336 scopus 로고    scopus 로고
    • Cell individuality: The bistability of competence development
    • Simon A (2005) Cell individuality: the bistability of competence development. Trends Microbiol 13: 459-462.
    • (2005) Trends Microbiol , vol.13 , pp. 459-462
    • Simon, A.1
  • 11
    • 17644423916 scopus 로고    scopus 로고
    • Bistability in the bacillus subtilis k-state (competence) requires a positive feedback loop
    • Maamar H, Dubnau D (2005) Bistability in the bacillus subtilis k-state (competence) requires a positive feedback loop. Mol Microbiol 56: 615-624.
    • (2005) Mol Microbiol , vol.56 , pp. 615-624
    • Maamar, H.1    Dubnau, D.2
  • 12
    • 0036532226 scopus 로고    scopus 로고
    • Self-perpetuating states in signal transduction: Positive feedback, double-negative feedback and bistability
    • Ferrel J (2002) Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability. Curr Opin Cell Biol 14: 140-148.
    • (2002) Curr Opin Cell Biol , vol.14 , pp. 140-148
    • Ferrel, J.1
  • 13
    • 33645293152 scopus 로고    scopus 로고
    • An excitable gene regulatory circuit induces transient cellular differentiation
    • Süel GM, Garcia-Ojalvo J, Liberman LM, Elowitz MB (2006) An excitable gene regulatory circuit induces transient cellular differentiation. Nature 440: 545-550.
    • (2006) Nature , vol.440 , pp. 545-550
    • Süel, G.M.1    Garcia-Ojalvo, J.2    Liberman, L.M.3    Elowitz, M.B.4
  • 15
    • 18344374628 scopus 로고
    • First passage time problems for a class of master equations with separable kernels
    • G Weiss AS (1983) First passage time problems for a class of master equations with separable kernels. Physica A 119: 569-579.
    • (1983) Physica A , vol.119 , pp. 569-579
    • Weiss, A.S.G.1
  • 17
    • 36749116443 scopus 로고
    • First passage time approach to diffusion controlled reactions
    • G Weiss AS (1980) First passage time approach to diffusion controlled reactions. J Chem Phys 72: 4350-4357.
    • (1980) J Chem Phys , vol.72 , pp. 4350-4357
    • Weiss, A.S.G.1
  • 18
    • 17444402114 scopus 로고    scopus 로고
    • Master equation simulations of bistable and excitable dynamics in a model of a thermochemical system
    • B Nawakowski AK (2005) Master equation simulations of bistable and excitable dynamics in a model of a thermochemical system. J Chem Phys 109: 3134-3138.
    • (2005) J Chem Phys , vol.109 , pp. 3134-3138
    • Nawakowski, A.K.B.1
  • 19
    • 0032538886 scopus 로고    scopus 로고
    • Competence in bacillus subtilis is controlled by regulated proteolysis of a transcriptioni factor
    • Turgay K, Hahn J, Burghoom J, Dubnau D (1998) Competence in bacillus subtilis is controlled by regulated proteolysis of a transcriptioni factor. Embo J 17: 6730-6738.
    • (1998) Embo J , vol.17 , pp. 6730-6738
    • Turgay, K.1    Hahn, J.2    Burghoom, J.3    Dubnau, D.4
  • 20
    • 0037444724 scopus 로고    scopus 로고
    • Stochastic chemical kinetics and the quasi-steady-state assumption: Application to the gillespie algorithm
    • Rao C, Arkin A (2003) Stochastic chemical kinetics and the quasi-steady-state assumption: Application to the gillespie algorithm. J Chem Phys 118: 4999-5010.
    • (2003) J Chem Phys , vol.118 , pp. 4999-5010
    • Rao, C.1    Arkin, A.2
  • 21
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • Gillespie DT (1977) Exact stochastic simulation of coupled chemical reactions. J Phys Chem 81: 2340-2361.
    • (1977) J Phys Chem , vol.81 , pp. 2340-2361
    • Gillespie, D.T.1
  • 22
    • 33751347484 scopus 로고    scopus 로고
    • The finite state projection algorithm for the solution of the chemical master equation
    • Munsky B, Khammash M (2006) The finite state projection algorithm for the solution of the chemical master equation. J Chem Phys 124: 044104.
    • (2006) J Chem Phys , vol.124 , pp. 044104
    • Munsky, B.1    Khammash, M.2
  • 24
    • 61549115926 scopus 로고    scopus 로고
    • Kinetics of genetic switching into the state of bacterial competence
    • Leisner M, Kuhr J, Rädler JO, Frey E, Maier B (2009) Kinetics of genetic switching into the state of bacterial competence. Biophys J 96: 1178-1188.
    • (2009) Biophys J , vol.96 , pp. 1178-1188
    • Leisner, M.1    Kuhr, J.2    Rädler, J.O.3    Frey, E.4    Maier, B.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.