메뉴 건너뛰기




Volumn 10, Issue 1, 2010, Pages

Evolutionary analysis of foot-and-mouth disease virus serotype SAT 1 isolates from East Africa suggests two independent introductions from southern africa

Author keywords

[No Author keywords available]

Indexed keywords

CATTLE; DISEASE CONTROL; DISEASE PREVALENCE; DISEASE SEVERITY; EPIDEMIOLOGY; FOOT AND MOUTH DISEASE; GENEALOGY; PHYLOGENETICS;

EID: 78649458378     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-10-371     Document Type: Article
Times cited : (23)

References (44)
  • 1
    • 2042459160 scopus 로고    scopus 로고
    • Foot-and-mouth disease
    • 10.1128/CMR.17.2.465-493.2004. 15084510
    • Foot-and-mouth disease. MJ Grubman B Baxt, Clinical Microbiology Reviews 2004 17 2 465 493 10.1128/CMR.17.2.465-493.2004 15084510
    • (2004) Clinical Microbiology Reviews , vol.17 , Issue.2 , pp. 465-493
    • Grubman, M.J.1    Baxt, B.2
  • 2
    • 0027520635 scopus 로고
    • Distinctive features of foot-and-mouth disease virus, a member of the picornavirus family; Aspects of virus protein synthesis, protein processing and structure
    • 10.1016/0079-6107(93)90016-D. 8396787
    • Distinctive features of foot-and-mouth disease virus, a member of the picornavirus family; aspects of virus protein synthesis, protein processing and structure. GJ Belsham, Progress in Biophysics and Molecular Biology 1993 60 241 260 10.1016/0079-6107(93)90016-D 8396787
    • (1993) Progress in Biophysics and Molecular Biology , vol.60 , pp. 241-260
    • Belsham, G.J.1
  • 3
    • 0037232963 scopus 로고    scopus 로고
    • Structure and receptor binding
    • 10.1016/S0168-1702(02)00258-7. 12527436
    • Structure and receptor binding. T Jackson AMQ King DI Stuart E Fry, Virus Research 2003 91 33 46 10.1016/S0168-1702(02)00258-7 12527436
    • (2003) Virus Research , vol.91 , pp. 33-46
    • Jackson, T.1    King, A.M.Q.2    Stuart, D.I.3    Fry, E.4
  • 4
    • 0035922057 scopus 로고    scopus 로고
    • The generation and persistence of genetic variation in foot-and-mouth disease virus
    • 10.1016/S0167-5877(01)00210-0. 11530198
    • The generation and persistence of genetic variation in foot-and-mouth disease virus. DT Haydon AR Samuel NJ Knowles, Preventive Veterinary Medicine 2001 51 111 124 10.1016/S0167-5877(01)00210-0 11530198
    • (2001) Preventive Veterinary Medicine , vol.51 , pp. 111-124
    • Haydon, D.T.1    Samuel, A.R.2    Knowles, N.J.3
  • 5
    • 0037235302 scopus 로고    scopus 로고
    • Molecular epidemiology of foot-and-mouth disease virus
    • 10.1016/S0168-1702(02)00260-5. 12527438
    • Molecular epidemiology of foot-and-mouth disease virus. NJ Knowles AR Samuel, Virus Research 2003 91 65 80 10.1016/S0168-1702(02)00260-5 12527438
    • (2003) Virus Research , vol.91 , pp. 65-80
    • Knowles, N.J.1    Samuel, A.R.2
  • 6
    • 63849270547 scopus 로고    scopus 로고
    • Unravelling selection shifts among foot-and-mouth disease virus (FMDV) serotypes
    • Unravelling selection shifts among foot-and-mouth disease virus (FMDV) serotypes. DC Tully MA Fares, Evolutionary Bioinformatics 2006 2 211 225
    • (2006) Evolutionary Bioinformatics , vol.2 , pp. 211-225
    • Tully, D.C.1    Fares, M.A.2
  • 8
    • 0022383052 scopus 로고
    • The duration of foot-and-mouth disease virus carrier state in African buffalo (i) in the individual animal and (ii) in a free-living herd
    • 10.1016/0147-9571(85)90004-9. 3004803
    • The duration of foot-and-mouth disease virus carrier state in African buffalo (i) in the individual animal and (ii) in a free-living herd. JB Condy RS Hedger C Hamblin ITR Barnett, Comparative Immunology, Microbiology and Infectious Diseases 1985 8 3/4 259 265 10.1016/0147-9571(85)90004-9 3004803
    • (1985) Comparative Immunology, Microbiology and Infectious Diseases , vol.8 , Issue.3-4 , pp. 259-265
    • Condy, J.B.1    Hedger, R.S.2    Hamblin, C.3    Barnett, I.T.R.4
  • 9
    • 0037230932 scopus 로고    scopus 로고
    • Foot and mouth disease in wildlife
    • 10.1016/S0168-1702(02)00263-0. 12527441
    • Foot and mouth disease in wildlife. GR Thomson W Vosloo ADS Bastos, Virus Research 2003 91 145 161 10.1016/S0168-1702(02)00263-0 12527441
    • (2003) Virus Research , vol.91 , pp. 145-161
    • Thomson, G.R.1    Vosloo, W.2    Bastos, A.D.S.3
  • 10
    • 0018680034 scopus 로고
    • The pathogenesis of foot-and-mouth disease in the African buffalo (Syncerus caffer) and the role of this species in the epidemiology of the disease in Kenya
    • DOI 10.1016/0021-9975(79)90045-8
    • The pathogenesis of foot-and-mouth disease in the African buffalo (Syncerus caffer) and the role of this species in the epidemiology of the disease in Kenya. EC Anderson WJ Doughty J Anderson R Paling, Journal of Comparative Pathology 1979 89 511 519 10.1016/0021-9975(79)90045-8 (Pubitemid 10250361)
    • (1979) Journal of Comparative Pathology , vol.89 , Issue.4 , pp. 541-549
    • Anderson, E.C.1    Doughty, W.J.2    Anderson, J.3    Paling, R.4
  • 12
    • 47049087603 scopus 로고    scopus 로고
    • Serological survey for foot-and-mouth disease virus in wildlife in eastern Africa and estimation of test parameters of a nonstructural protein enzyme-linked immunosorbent assay for buffalo
    • 10.1128/CVI.00409-07. 18385460
    • Serological survey for foot-and-mouth disease virus in wildlife in eastern Africa and estimation of test parameters of a nonstructural protein enzyme-linked immunosorbent assay for buffalo. BMDC Bronsvoort S Parida I Handel S McFarland L Fleming P Hamblin R Kock, Clinical and Vaccine Immunology 2008 15 6 1003 1011 10.1128/CVI.00409-07 18385460
    • (2008) Clinical and Vaccine Immunology , vol.15 , Issue.6 , pp. 1003-1011
    • Bmdc, B.1    Parida, S.2    Handel, I.3    McFarland, S.4    Fleming, L.5    Hamblin, P.6    Kock, R.7
  • 13
    • 33947387982 scopus 로고    scopus 로고
    • Comparison of SAT-1 foot-and-mouth disease virus isolates obtained from East Africa between 1971 and 2000 with viruses from the rest of sub-Saharan Africa
    • 10.1007/s00705-006-0893-x. 17187294
    • Comparison of SAT-1 foot-and-mouth disease virus isolates obtained from East Africa between 1971 and 2000 with viruses from the rest of sub-Saharan Africa. M Sahle RM Dwarka EH Venter W Vosloo, Archives of Virology 2007 152 797 804 10.1007/s00705-006-0893-x 17187294
    • (2007) Archives of Virology , vol.152 , pp. 797-804
    • Sahle, M.1    Dwarka, R.M.2    Venter, E.H.3    Vosloo, W.4
  • 15
    • 0033793521 scopus 로고    scopus 로고
    • Consequences of recombination on traditional phylogenetic analysis
    • 11014833
    • Consequences of recombination on traditional phylogenetic analysis. MH Schierup J Hein, Genetics 2000 156 879 891 11014833
    • (2000) Genetics , vol.156 , pp. 879-891
    • Schierup, M.H.1    Hein, J.2
  • 17
    • 33751253784 scopus 로고    scopus 로고
    • Recombination patterns in aphthoviruses mirror those found in other picornaviruses
    • 10.1128/JVI.01100-06. 16971423
    • Recombination patterns in aphthoviruses mirror those found in other picornaviruses. L Heath E van der Walt A Varsani DP Martin, Journal of Virology 2006 80 23 11827 11832 10.1128/JVI.01100-06 16971423
    • (2006) Journal of Virology , vol.80 , Issue.23 , pp. 11827-11832
    • Heath, L.1    Van Der Walt, E.2    Varsani, A.3    Martin, D.P.4
  • 20
    • 56449131348 scopus 로고    scopus 로고
    • The tale of a modern animal plague: Tracing the evolutionary history and determining the time-scale for foot and mouth disease virus
    • 10.1016/j.virol.2008.09.011. 18945462
    • The tale of a modern animal plague: tracing the evolutionary history and determining the time-scale for foot and mouth disease virus. DC Tully MA Fares, Virology 2008 382 250 256 10.1016/j.virol.2008.09.011 18945462
    • (2008) Virology , vol.382 , pp. 250-256
    • Tully, D.C.1    Fares, M.A.2
  • 21
    • 20444427160 scopus 로고    scopus 로고
    • Time dependency of molecular rate estimates and systematic overestimation of recent divergence times
    • 10.1093/molbev/msi145. 15814826
    • Time dependency of molecular rate estimates and systematic overestimation of recent divergence times. SYW Ho MJ Phillips A Cooper AJ Drummond, Molecular Biology and Evolution 2005 22 7 1561-1568 10.1093/molbev/msi145 15814826
    • (2005) Molecular Biology and Evolution , vol.22 , Issue.7 , pp. 1561-1568
    • Ho, S.Y.W.1    Phillips, M.J.2    Cooper, A.3    Drummond, A.J.4
  • 22
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
    • 10.1093/molbev/msm092. 17488738
    • MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. K Tamura J Dudley M Nei S Kumar, Molecular Biology and Evolution 2007 24 8 1596 1599 10.1093/molbev/msm092 17488738
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 23
    • 0035148533 scopus 로고    scopus 로고
    • Evidence for positive selection in foot-and-mouth disease virus capsid genes from field isolates
    • 11139487
    • Evidence for positive selection in foot-and-mouth disease virus capsid genes from field isolates. DT Haydon AD Bastos NJ Knowles AR Samuel, Genetics 2001 157 7 15 11139487
    • (2001) Genetics , vol.157 , pp. 7-15
    • Haydon, D.T.1    Bastos, A.D.2    Knowles, N.J.3    Samuel, A.R.4
  • 25
    • 58149517667 scopus 로고    scopus 로고
    • Shifts in the selection-drift balance drive the evolution and epidemiology of foot-and-mouth disease virus
    • 10.1128/JVI.01500-08. 19004952
    • Shifts in the selection-drift balance drive the evolution and epidemiology of foot-and-mouth disease virus. DC Tully MA Fares, Journal of Virology 2009 83 2 781 790 10.1128/JVI.01500-08 19004952
    • (2009) Journal of Virology , vol.83 , Issue.2 , pp. 781-790
    • Tully, D.C.1    Fares, M.A.2
  • 27
    • 79952901426 scopus 로고    scopus 로고
    • Low diversity of foot-and-mouth disease serotype C virus in Kenya: Evidence for probable vaccine strain re-introductions in the field
    • Available on Cambridge Journals Online, 25 March 2010
    • Low diversity of foot-and-mouth disease serotype C virus in Kenya: evidence for probable vaccine strain re-introductions in the field. AK Sangula HR Siegismund GJ Belsham SN Balinda C Masembe VB Muwanika, Epidemiology and Infection 2010 Available on Cambridge Journals Online, 25 March 2010
    • (2010) Epidemiology and Infection
    • Sangula, A.K.1    Siegismund, H.R.2    Belsham, G.J.3    Balinda, S.N.4    Masembe, C.5    Muwanika, V.B.6
  • 30
  • 32
    • 0025267792 scopus 로고
    • The general stochastic model of nucleotide substitution
    • 10.1016/S0022-5193(05)80104-3. 2338834
    • The general stochastic model of nucleotide substitution. F Rodriguez JL Oliver A Marfn JR Medina, Journal of Theoretical Biology 1990 142 485 501 10.1016/S0022-5193(05)80104-3 2338834
    • (1990) Journal of Theoretical Biology , vol.142 , pp. 485-501
    • Rodriguez, F.1    Oliver, J.L.2    Marfn, A.3    Medina, J.R.4
  • 33
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • 10.1186/1471-2148-7-214. 17996036
    • BEAST: Bayesian evolutionary analysis by sampling trees. AJ Drummond A Rambaut, BMC Evolutionary Biology 2007 7 10.1186/1471-2148-7-214 17996036
    • (2007) BMC Evolutionary Biology , vol.7
    • Drummond, A.J.1    Rambaut, A.2
  • 34
    • 0034983646 scopus 로고    scopus 로고
    • Bayesian selection of continuous-time markov chain evolutionary models
    • 11371589
    • Bayesian selection of continuous-time markov chain evolutionary models. MA Suchard RE Weiss JS Sinsheimer, Molecular Biology and Evolution 2001 18 16 1001 1013 11371589
    • (2001) Molecular Biology and Evolution , vol.18 , Issue.16 , pp. 1001-1013
    • Suchard, M.A.1    Weiss, R.E.2    Sinsheimer, J.S.3
  • 35
    • 0022376704 scopus 로고    scopus 로고
    • Dating of human-ape splitting by a molecular clock of mitochondrial DNA
    • 10.1007/BF02101694. 3934395
    • Dating of human-ape splitting by a molecular clock of mitochondrial DNA. M Hasegawa H Kishino T Yano, Journal of Molecular Evolution 22 160 174 10.1007/BF02101694 3934395
    • Journal of Molecular Evolution , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 36
    • 14544275616 scopus 로고    scopus 로고
    • A genetic algorithm approach to detecting lineage-specific variation in selection pressure
    • 10.1093/molbev/msi031. 15509724
    • A genetic algorithm approach to detecting lineage-specific variation in selection pressure. SLK Pond SDW Frost, Molecular Biology and Evolution 2005 22 3 478 485 10.1093/molbev/msi031 15509724
    • (2005) Molecular Biology and Evolution , vol.22 , Issue.3 , pp. 478-485
    • Pond, S.L.K.1    Frost, S.D.W.2
  • 37
    • 33748770095 scopus 로고    scopus 로고
    • Automated phylogenetic detection of recombination using a genetic algorithm
    • 10.1093/molbev/msl051. 16818476
    • Automated phylogenetic detection of recombination using a genetic algorithm. SLK Pond D Posada MB Gravenor CH Woelk SDW Frost, Molecular Biology and Evolution 2006 23 10 1891 1901 10.1093/molbev/msl051 16818476
    • (2006) Molecular Biology and Evolution , vol.23 , Issue.10 , pp. 1891-1901
    • Pond, S.L.K.1    Posada, D.2    Gravenor, M.B.3    Woelk, C.H.4    Frost, S.D.W.5
  • 38
    • 0024307824 scopus 로고
    • Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominodea
    • 10.1007/BF02100115. 2509717
    • Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominodea. H Kishino M Hasegawa, Journal of Molecular Evolution 1989 29 170 179 10.1007/BF02100115 2509717
    • (1989) Journal of Molecular Evolution , vol.29 , pp. 170-179
    • Kishino, H.1    Hasegawa, M.2
  • 39
    • 13444251528 scopus 로고    scopus 로고
    • RDP2: Recombination detection and analysis from sequence alignments
    • 10.1093/bioinformatics/bth490. 15377507
    • RDP2: recombination detection and analysis from sequence alignments. DP Martin C Williamson D Posada, Bioinformatics 2005 21 2 260 262 10.1093/bioinformatics/bth490 15377507
    • (2005) Bioinformatics , vol.21 , Issue.2 , pp. 260-262
    • Martin, D.P.1    Williamson, C.2    Posada, D.3
  • 40
    • 0033824415 scopus 로고    scopus 로고
    • RDP: Detection of recombination amongst aligned sequences
    • 10.1093/bioinformatics/16.6.562. 10980155
    • RDP: detection of recombination amongst aligned sequences. D Martin E Rybicki, Bioinformatics 2000 16 6 562 563 10.1093/bioinformatics/16.6.562 10980155
    • (2000) Bioinformatics , vol.16 , Issue.6 , pp. 562-563
    • Martin, D.1    Rybicki, E.2
  • 41
    • 0033590220 scopus 로고    scopus 로고
    • Possible emergence of new geminiviruses by frequent recombination
    • 10.1006/viro.1999.0056. 10600594
    • Possible emergence of new geminiviruses by frequent recombination. M Padidam S Sawyer CM Fauquet, Virology 1999 265 218 225 10.1006/viro.1999.0056 10600594
    • (1999) Virology , vol.265 , pp. 218-225
    • Padidam, M.1    Sawyer, S.2    Fauquet, C.M.3
  • 42
    • 0028793170 scopus 로고
    • Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning
    • 10.1089/aid.1995.11.1423. 8573403
    • Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning. MO Salminen JK Carr DS Burke FE McCutchan, AIDS Research and Human Retroviruses 1995 11 1423 1425 10.1089/aid.1995.11.1423 8573403
    • (1995) AIDS Research and Human Retroviruses , vol.11 , pp. 1423-1425
    • Salminen, M.O.1    Carr, J.K.2    Burke, D.S.3    McCutchan, F.E.4
  • 43
    • 0026708873 scopus 로고
    • Analyzing the mosaic structure of genes
    • 1556748
    • Analyzing the mosaic structure of genes. J Maynard Smith, Journal of Molecular Evolution 1992 34 126 129 1556748
    • (1992) Journal of Molecular Evolution , vol.34 , pp. 126-129
    • Maynard Smith, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.