Evidence for positive selection in foot-and-mouth disease virus capsid genes from field isolates

Genetics

Volumn 157, Issue 1, 2001, Pages 7-15

  Haydon, Daniel T ^a   Bastos, Armanda D ^b   Knowles, Nick J ^c   Samuel, Alan R ^c  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

^b ONDERSTEPOORT VETERINARY INSTITUTE   (South Africa)

^c INSTITUTE FOR ANIMAL HEALTH   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

CAPSID PROTEIN;

AMINO ACID SUBSTITUTION; ARTICLE; CODON; FOOT AND MOUTH DISEASE VIRUS; NATURAL SELECTION; NONHUMAN; PRIORITY JOURNAL; SEROTYPE; VIRUS CAPSID; VIRUS ISOLATION; VIRUS MUTANT;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ANIMALS; ANTIGENS, VIRAL; APHTHOVIRUS; CAPSID; CAPSID PROTEINS; CHEMISTRY, PHYSICAL; CONSENSUS SEQUENCE; GENES, VIRAL; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; SELECTION (GENETICS); SEQUENCE HOMOLOGY, AMINO ACID; SEROTYPING;

BUBALUS; FOOT-AND-MOUTH DISEASE VIRUS; MIRIDAE; SYNCERUS CAFFER;

EID: 0035148533     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (49)

1. The three dimensional structure of foot and mouth disease virus at 2.9 A resolution
2. Natural transmission of foot-and-mouth disease virus between African buffalo (Syncerus caffer) and impala (Aepyceros melampus) in the Kruger National Park, South Africa
3. Analysis of neutralising antigenic sites on the surface of type A12 foot-and-mouth disease virus
4. Antibody recognition and neutralization of foot and mouth disease virus
5. Positive selection on the H3 hemagglutinin gene of human influenza virus A
6. Predicting the evolution of human influenza A
7. Neutralization antigenic sites on type Asia-1 foot-and-mouth disease virus defined by monoclonal antibody-resistant variants
8. Identification of a fifth neutralizable site on type O foot and mouth disease virus following characterization of single and quintuple monoclonal antibody escape mutants
9. Characterization of monoclonal-antibodies against a type SAT-2 foot-and-mouth disease virus
10. Perturbations in the surface of A22 Iraq foot-and-mouth disease virus accompanying coupled changes in host cell specificity and antigenicity
11. Antigenic analysis of SAT 2 serotype foot-and-mouth disease virus isolates from Zimbabwe using monoclonal antibodies
12. Selection of antigenic variants of foot-and-mouth disease virus in the absence of antibodies as revealed by an in situ assay
13. Complications of RNA heterogeneity for the engineering of virus vaccines and antiviral agents
14. Extensive antigenic diversification of foot-and-mouth disease virus by amino acid substitutions outside of the major antigenic site
15. Emerging foot-and-mouth disease virus variants with antigenically critical amino acid substitutions predicted by model studies using reference viruses
16. Positive Darwinian evolution in human influenza A viruses
17. Codon-based model of nucleotide substitution for protein-coding dna-sequences
18. Characterizing sequence variation in the VP1 capsid proteins of foot and mouth disease virus (serotype O) with respect to virion structure
19. Positive selection and interallelic recombination at the Merozoite surface antigen-1 (MSA-1) locus of Plasmodium falciparum
20. Positive Darwinian selection promotes charge profile diversity in the antigen-binding cleft of class 1 major-histocompatibility-complex molecules
21. Sequence analysis of monoclonal antibody resistant mutants of type O foot and mouth disease virus: Evidence for the involvement of the three surface exposed capsid proteins in four antigenic sites
22. The structure and antigenicity of a type C foot and mouth disease virus
23. Genetic and antigenic variance of foot-and-mouth disease virus type Asia1
24. Two mechanisms of antigenic diversification of foot-and-mouth disease virus
25. Evolution of capsid protein genes of foot-and-mouth disease virus: Antigenic variation without accumulation of amino acid substitutions over six decades
26. Extensive antigenic heterogeneity of foot-and-mouth disease virus of serotype C
27. A single amino acid substitution affects multiple epitopes in the major antigenic site of foot-and-mouth disease virus of serotype C
28. Direct evaluation of the immunodominance of a major antigenic site of foot-and-mouth-disease virus in a natural host
29. Protective immune response against foot and mouth disease
30. Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
31. Neutralizing epitopes of type O foot-and-mouth disease virus. II. Mapping three conformational sites with synthetic peptide reagents
32. Analysis of neutralizing epitopes on foot and mouth disease virus
33. The carrier state in foot-and-mouth-diseasean immunological review
34. Antigenic analysis of type O foot-and-mouth disease virus in the persistently infected bovine
35. Molecular analysis of foot-and-mouth disease type O viruses isolated in Saudi Arabia between 1983 and 1995
36. Genetic analysis of type O viruses responsible for epidemics of foot-and-mouth disease in North Africa
37. Natural selection on the gag, pol, and ely genes of the human immunodeficiency virus (HIV-1)
38. In search of molecular Darwinism
39. Neutralisation sites of type O1 foot-and-mouth disease virus defined by monoclonal antibodies and neutralisation escape variants
40. A method for detecting positive selection at single amino acid sites
41. Antigenic sites on foot-and-mouth disease virus type A10
42. Persistent infection of African buffalo (Syncerus caffer) with SAT-type foot-and-mouth-disease viruses: Rate of fixation of mutations, antigenic change and interspecies transmission
43. Failure of vaccination to prevent outbreaks of foot and mouth disease
44. Neutralization of foot and mouth disease virus can be mediated through any of at least three separate antigenic sites
45. Codon-substitution models for heterogeneous selection pressure at amino acid sites
46. Protein volume in solution
47. Genealogical evidence for positive selection in the nef gene of HIV-1