An RNA base discrete state model toward tertiary structure prediction

Chinese Physics Letters

Volumn 27, Issue 11, 2010, Pages

  Jian, Zhang ^a   Yu Jie, Zhang ^a   Wei, Wang ^a  

^a NANJING UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CHAINS; FORECASTING; FREE ENERGY;

ACID BASE; ACID-FREE; BASE PAIR STACKING; BASE-STACKING; DIRECTLY MODEL; DISCRETE MODELS; DISCRETE STATE MODELS; STRUCTURE PREDICTION; TERTIARY STRUCTURES; THREE-DIMENSIONAL STRUCTURE;

RNA;

EID: 78649374928     PISSN: 0256307X     EISSN: 17413540     Source Type: Journal    
DOI: 10.1088/0256-307X/27/11/118702     Document Type: Article

References (21)

1. Gesteland R F et al 2006 The RNA World 3rd edn (New York: Cold Spring Harbor Press) Chap 11
2. Mathews D H et al 1999 J. Mol. Biol. 288 911
3. Zuker M 2003 Nucleic Acids Res. 31 3406
4. Hofacker I L et al 1994 Monatshefte Chemie 125 167
5. Doshi K J et al 2004 BMC Bioinformatics 5 105
6. Gardner P P et al 2004 BMC Bioinformatics 5 140
7. Zhang J et al 2008 J. Chem. Phys. 128 125107
8. Zhang J et al 2009 RNA 15 2248
9. Bradley P et al 2005 Science 309 1868
10. Zhang C et al 2004 Protein Science 13 400
11. Zhang J, Qin M and Wang W 2006 Proteins 62 672
12. Zuo G H et al 2005 Chin. Phys. Lett. 22 1809
13. Xu W X et al 2005 Chin. Phys. Lett. 22 258
14. Chen S J 2008 Annu.Rev. Biophys. 37 197
15. Parisien M and Major F 2008 Nature 452 51
16. Yingling Y G and Shapiro B A 2006 J. Mol. Graphics Modelling 25 261
17. Das R and Baker D 2007 Proc. Natl.Acad. Sci. USA 104 14664
18. Murray L J W, Arendall W B III et al 2003 Proc. Natl.Acad. Sci. USA 100 13904
19. Klein D J et al 2004 J. Mol. Biol. 340 141
20. Zhang J F, Chen R and Liang J 2004 Proceedings of the 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society 26 2976 (San Francisco 1-4 September 2004)
21. Kearsley S K 1989 Acta Cryst.A 45 208