Signatures of selection in loci governing major colour patterns in Heliconius butterflies and related species

BMC Evolutionary Biology

Volumn 10, Issue 1, 2010, Pages

  Wu, Grace C ^a   Joron, Mathieu ^b   Jiggins, Chris D ^b  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^b MUSÉUM NATIONAL D'HISTOIRE NATURELLE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BUTTERFLY; COLOR; EVOLUTIONARY BIOLOGY; GENETIC ANALYSIS; PROTEIN; RECOMBINATION; SELECTION;

BACTERIA (MICROORGANISMS); HELICONIUS; PAPILIONOIDEA;

ANIMAL; ARTICLE; BUTTERFLY; DNA SEQUENCE; FORELIMB; GENE; GENE EXPRESSION PROFILING; GENETIC SELECTION; GENETICS; MOLECULAR EVOLUTION; MULTIGENE FAMILY; PHYSIOLOGY; PIGMENTATION; SEQUENCE ALIGNMENT;

ANIMALS; BUTTERFLIES; EVOLUTION, MOLECULAR; GENE EXPRESSION PROFILING; GENES, INSECT; MULTIGENE FAMILY; PIGMENTATION; SELECTION, GENETIC; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; WING;

EID: 78649354063     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-10-368     Document Type: Article

References (40)

1. Resurrecting the role of transcription factor change in developmental evolution. VJ Lynch GP Wagner, Evolution 2008 62 2131 2154 10.1111/j.1558-5646. 2008.00440.x 18564379
2. The loci of evolution: how predictable is genetic evolution? DL Stern V Orgogozo, Evolution 2008 62 2155 2177 10.1111/j.1558-5646.2008.00450.x 18616572
3. Is Genetic Evolution Predictable? DL Stern V Orgogozo, Science 2009 323 746 751 10.1126/science.1158997 19197055
4. The locus of evolution: Evo devo and the genetics of adaptation. HE Hoekstra JA Coyne, Evolution 2007 61 995 1016 10.1111/j.1558-5646.2007.00105.x 17492956
5. Inferring Nonneutral Evolution from Human-Chimp-Mouse Orthologous Gene Trios. AG Clark S Glanowski R Nielsen PD Thomas A Kejariwal MA Todd DM Tanenbaum D Civello F Lu B Murphy S Ferriera G Wang X Zheng TJ White JJ Sninsky MD Adams M Cargill, Science 2003 302 1960 1963 10.1126/science.1088821 14671302
6. A Single Amino Acid Mutation Contributes to Adaptive Beach Mouse Color Pattern. HE Hoekstra RJ Hirschmann RA Bundey PA Insel JP Crossland, Science 2006 313 101 104 10.1126/science.1126121 16825572
7. Conserved Genetic Basis of a Quantitative Plumage Trait Involved in Mate Choice. NI Mundy NS Badcock T Hart K Scribner K Janssen NJ Nadeau, Science 2004 303 1870 1873 10.1126/science.1093834 15031505
8. Adaptive reptile color variation and the evolution of the MC1R gene. EB Rosenblum HE Hoekstra MW Nachman, Evolution 2004 58 1794 15446431
9. Endless forms: the evolution of gene regulation and morphological diversity. SB Carroll, Cell 2000 101 577 580 10.1016/S0092-8674(00)80868-5 10892643
10. SB Carroll JK Grenier SD Weatherbee, From DNA to Diversity: Molecular Genetics and the Evolution of Animal Design Wiley-Blackwell 2000
11. Chance caught on the wing: cis-regulatory evolution and the origin of pigment patterns in Drosophila. N Gompel B Prud'homme PJ Wittkopp VA Kassner SB Carroll, Nature 2005 433 481 487 10.1038/nature03235 15690032
12. Genetic and developmental basis of evolutionary pelvic reduction in threespine sticklebacks. MD Shapiro ME Marks CL Peichel BK Blackman KS Nereng B Jonsson D Schluter DM Kingsley, Nature 2004 428 717 723 10.1038/nature02415 15085123 (Pubitemid 38508276)
13. Regulatory evolution of shavenbaby/ovo underlies multiple cases of morphological parallelism. E Sucena I Delon I Jones F Payre DL Stern, Nature 2003 424 935 938 10.1038/nature01768 12931187
14. Heliconius wing patterns: an evo-devo model for understanding phenotypic diversity. M Joron CD Jiggins A Papanicolaou WO McMillan, Heredity 2006 97 157 167 10.1038/sj.hdy.6800873 16835591
15. Convergent evolution in the genetic basis of Müllerian mimicry in Heliconius butterflies. SW Baxter R Papa N Chamberlain SJ Humphray M Joron C Morrison RH ffrench-Constant WO McMillan CD Jiggins, Genetics 2008 180 1567 1577 10.1534/genetics.107.082982 18791259
16. A conserved supergene locus controls colour pattern diversity in Heliconius butterflies. M Joron R Papa M Beltrn N Chamberlain J Mavrez S Baxter M Abanto E Bermingham SJ Humphray J Rogers H Beasley K Barlow RH ffrench-Constant J Mallet WO McMillan CD Jiggins, PLoS Biol 2006 4 303 10.1371/journal.pbio.0040303 17002517
17. Genomic Hotspots for Adaptation: The Population Genetics of Müllerian Mimicry in the Heliconius melpomene Clade. SW Baxter NJ Nadeau LS Maroja P Wilkinson BA Counterman A Dawson M Beltran S Perez-Espona N Chamberlain L Ferguson R Clark C Davidson R Glithero J Mallet WO McMillan M Kronforst M Joron RH ffrench-Constant CD Jiggins, PLoS Genet 2010 6 1000794 10.1371/journal.pgen.1000794 20140188
18. Characterization of a hotspot for mimicry: assembly of a butterfly wing transcriptome to genomic sequence at the HmYb/Sb locus. L Ferguson SF Lee N Chamberlain N Nadeau M Joron S Baxter P Wilkinson A Papanicolaou S Kumar T Kee R Clark C Davidson R Glithero H Beasley H Vogel R ffrench-Constant CD Jiggins, Mol Ecol 2010 19 240 254 10.1111/j.1365-294X.2009.04475.x 20331783
19. Rapid evolution of cancer/testis genes on the X chromosome. BJ Stevenson C Iseli S Panji M Zahn-Zabal W Hide L Old AJ Simpson CV Jongeneel, BMC Genomics 2007 8 129 10.1186/1471-2164-8-129 17521433
20. Positive selection of a duplicated UV-sensitive visual pigment coincides with wing pigment evolution in Heliconius butterflies. AD Briscoe SM Bybee GD Bernard F Yuan MP Sison-Mangus RD Reed AD Warren J Llorente-Bousquets C Chiao, P Natl Acad Sci USA 2010 107 3628 3633 10.1073/pnas.0910085107
21. PAML: a program package for phylogenetic analysis by maximum likelihood. Z Yang, Comput Appl Biosci 1997 13 555 556 9367129
22. Looking for Darwin in all the wrong places: the misguided quest for positive selection at the nucleotide sequence level. AL Hughes, Heredity 2007 99 364 373 10.1038/sj.hdy.6801031 17622265
23. Evolutionary Expressed Sequence Tag Analysis of Drosophila Female Reproductive Tracts Identifies Genes Subjected to Positive Selection. WJ Swanson A Wong MF Wolfner CF Aquadro, Genetics 2004 168 1457 1465 10.1534/genetics.104. 030478 15579698
24. SMART, a simple modular architecture research tool: Identification of signaling domains. J Schultz F Milpetz P Bork CP Ponting, P Natl Acad Sci USA 1998 95 5857 5864 10.1073/pnas.95.11.5857 (Pubitemid 28248931)
25. WD repeat-containing mitotic checkpoint proteins act as transcriptional repressors during interphase. Y Yoon K Baek S Jeong H Shin G Ha A Jeon S Hwang J Chun C Lee, FEBS Letters 2004 575 23 29 10.1016/j.febslet.2004.07.089 15388328
26. Do pollen feeding, pupal-mating and larval gregariousness have a single origin in Heliconius butterflies? Inferences from multilocus DNA sequence data. CD Jiggins AV Brower E Bermingham J Mallet, Biol J Linn Soc 2007 92 221 239 10.1111/j.1095-8312.2007.00830.x (Pubitemid 47437781)
27. Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites. M Anisimova R Nielsen Z Yang, Genetics 2003 164 1229 1236 12871927
28. Automated Phylogenetic Detection of Recombination Using a Genetic Algorithm. SL Kosakovsky Pond D Posada MB Gravenor CH Woelk SDW Frost, Mol Bio Evol 2006 23 1891 1901 10.1093/molbev/msl051 (Pubitemid 44412875)
29. Enoyl-CoA hydratase: Reaction, mechanism, and inhibition. G Agnihotri H Liu, Bioorgan Med Chem 2003 11 9 20 10.1016/S0968-0896(02)00333-4 (Pubitemid 35430116)
30. Near Neutrality: Leading Edge of the Neutral Theory of Molecular Evolution. AL Hughes, Ann NY Acad Sci 2008 1133 179 162 10.1196/annals.1438.001 (Pubitemid 351841332)
31. Fast accumulation of nonsynonymous mutations on the female-specific W chromosome in birds. S Berlin H Ellegren, J Mol Evol 2002 62 66 72 10.1007/s00239-005-0067-6
32. Reduced efficacy of selection in regions of the Drosophila genome that lack crossing over. P Haddrill D Halligan D Tomaras B Charlesworth, Genome Biol 2007 8 18 10.1186/gb-2007-8-2-r18 17284312
33. Molecular evolution of functional genes on the mammalian Y chromosome. G Wyckoff L Joyce C Wu, Mol Biol Evol 2002 19 1633 1636 12200491
34. The Population Genetics of dN/dS. S Kryazhimskiy JB Plotkin, PLoS Genet 2008 4 1000304 10.1371/journal.pgen.1000304 19081788
35. The molecular elements that underlie developmental evolution. CR Alonso AS Wilkins, Nat Rev Genet 2005 6 709 715 10.1038/nrg1676 16094311
36. Regulation of gene expression by alternative untranslated regions. TA Hughes, Trends Genet 2006 22 119 122 10.1016/j.tig.2006.01.001 16430990
37. Genetic Evidence for Hybrid Trait Speciation in Heliconius Butterflies. C Salazar SW Baxter C Pardo-Diaz G Wu A Surridge M Linares E Bermingham CD Jiggins, PLoS Genet 2010 6 1000930 10.1371/journal.pgen.1000930 20442862
38. Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Z Yang R Nielsen, Mol Biol Evol 2000 17 32 43 10666704
39. Both shared and divergent expression domains underlie a convergent mimetic phenotype in Heliconius butterflies. L Ferguson CD Jiggins, Evol Dev 2009 11 498 512 10.1111/j.1525-142X.2009.00358.x 19754707
40. Not So Different After All: A Comparison of Methods for Detecting Amino Acid Sites Under Selection. SL Kosakovsky Pond SDW Frost, Mol Bio Evol 2005 22 1208 1222 10.1093/molbev/msi105 (Pubitemid 40577758)