Direct observation of multiple pathways of single-stranded DNA stretching

Physical Review Letters

Volumn 105, Issue 21, 2010, Pages

  Chen, Wuen Shiu ^a   Chen, Wei Hung ^a,b   Chen, Zephan ^a   Gooding, Ashton A ^a   Lin, Kuan Jiuh ^b   Kiang, Ching Hwa ^a  

^a RICE UNIVERSITY   (United States)

^b NATIONAL CHUNG HSING UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL PROCESS; CONSTANT FORCE; DIRECT OBSERVATION; MECHANICAL FORCE; MULTIPLE PATHWAYS; RANDOM SEQUENCE; SINGLE-MOLECULE; SINGLE-STRANDED DNA;

GENE EXPRESSION;

MECHANICAL PROPERTIES;

EID: 78649258903     PISSN: 00319007     EISSN: 10797114     Source Type: Journal    
DOI: 10.1103/PhysRevLett.105.218104     Document Type: Article

References (44)

1. G.J.L. Wuite, S.B. Smith, M. Young, D. Keller, and C. Bustamante, Nature (London) NATUAS 0028-0836 404, 103 (2000). 10.1038/35003614
2. J.-B. Lee, R.K. Hite, S.M. Hamdan, X.S. Xie, C.C. Richardson, and A.M. van Oijen, Nature (London) NATUAS 0028-0836 439, 621 (2006). 10.1038/nature04317
3. L. Zou and S.J. Elledge, Science 300, 1542 (2003). SCIEAS 0036-8075 10.1126/science.1083430
4. D.T. Braddock, J.M. Louis, J.L. Baber, D. Levens, and G.M. Clore, Nature (London) NATUAS 0028-0836 415, 1051 (2002). 10.1038/4151051a
5. S.B. Smith, Y.J. Cui, and C. Bustamante, Science 271, 795 (1996). SCIEAS 0036-8075 10.1126/science.271.5250.795
6. E. Biet, J.-S. Sun, and M. Dutreix, Nucleic Acids Res. 27, 596 (1999). NARHAD 0305-1048 10.1093/nar/27.2.596
7. R. Bar-Ziv and A. Libchaber, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 98, 9068 (2001). 10.1073/pnas.151242898
8. C. Ke, M. Humeniuk, H. S.-Gracz, and P.E. Marszalek, Phys. Rev. Lett. 99, 018302 (2007). PRLTAO 0031-9007 10.1103/PhysRevLett.99.018302
9. N.L. Goddard, G. Bonnet, O. Krichevsky, and A. Libchaber, Phys. Rev. Lett. 85, 2400 (2000). PRLTAO 0031-9007 10.1103/PhysRevLett.85.2400
10. M.-N. Dessinges, B. Maier, Y. Zhang, M. Peliti, D. Bensimon, and V. Croquette, Phys. Rev. Lett. 89, 248102 (2002). PRLTAO 0031-9007 10.1103/PhysRevLett.89.248102
11. M.C. Murphy, I. Rasnik, W. Cheng, T.M. Lohman, and T. Ha, Biophys. J. 86, 2530 (2004). BIOJAU 0006-3495 10.1016/S0006-3495(04)74308-8
12. C. Bustamante, J.F. Marko, E.D. Siggia, and S. Smith, Science 265, 1599 (1994). SCIEAS 0036-8075 10.1126/science.8079175
13. S. Cocco, J. Yan, J.-F. Léger, D. Chatenay, and J.F. Marko, Phys. Rev. E PLEEE8 1539-3755 70, 011910 (2004). 10.1103/PhysRevE.70.011910
14. C. Danilowicz, C. Limouse, K. Hatch, A. Conover, V.W. Coljee, N. Kleckner, and M. Prentiss, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 106, 13196 (2009). 10.1073/pnas.0904729106
15. G.C. Schatz, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 104, 6885 (2007). 10.1073/pnas.0702187104
16. W.K. Olson and P.J. Flory, Biopolymers 11, 25 (1972). BIPMAA 0006-3525 10.1002/bip.1972.360110103
17. J.O. Tegenfeldt, C. Prinz, H. Cao, S. Chou, W.W. Reisner, R. Riehn, Y.M. Wang, E.C. Cox, J.C. Sturm, P. Silberzan, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 101, 10979 (2004). 10.1073/pnas.0403849101
18. J. Zlatanova, S.M. Lindsay, and S.H. Leuba, Prog. Biophys. Molec. Biol. PBIMAC 0079-6107 74, 37 (2000). 10.1016/S0079-6107(00)00014-6
19. Y. Zeng, A. Montrichok, and G. Zocchi, Phys. Rev. Lett. 91, 148101 (2003). PRLTAO 0031-9007 10.1103/PhysRevLett.91.148101
20. G.L. Randall, L. Zechiedrich, and B.M. Pettitt, Nucleic Acids Res. 37, 5568 (2009). NARHAD 0305-1048 10.1093/nar/gkp556
21. M. Guthold, X. Zhu, C. Rivetti, G. Yang, N.H. Thomson, S. Kasas, H.G. Hansma, B. Smith, P.K. Hansma, and C. Bustamante, Biophys. J. 77, 2284 (1999). BIOJAU 0006-3495 10.1016/S0006-3495(99)77067-0
22. C. Chen, W. Wang, Z. Wang, F. Wei, and X.S. Zhao, Nucleic Acids Res. 35, 2875 (2007). NARHAD 0305-1048 10.1093/nar/gkm177
23. N.C. Seeman, Nature (London) NATUAS 0028-0836 421, 427 (2003). 10.1038/nature01406
24. T. Hwa, E. Marinari, K. Sneppen, and L.-H. Tang, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 100, 4411 (2003). 10.1073/pnas.0736291100
25. H. Peng and X.S. Ling, Nanotechnology 20, 185101 (2009). NNOTER 0957-4484 10.1088/0957-4484/20/18/185101
26. J. Mathé, A. Aksimentiev, D.R. Nelson, K. Schulten, and A. Meller, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 102, 12377 (2005). 10.1073/pnas.0502947102
27. J. Rudnick and R. Bruinsma, Phys. Rev. Lett. 94, 038101 (2005). PRLTAO 0031-9007 10.1103/PhysRevLett.94.038101
28. J.L. Hutter and J. Bechhoefer, Rev. Sci. Instrum. 64, 1868 (1993). RSINAK 0034-6748 10.1063/1.1143970
29. H.-J. Butt and M. Jaschke, Nanotechnology 6, 1 (1995). NNOTER 0957-4484 10.1088/0957-4484/6/1/001
30. G. Mishra, D. Giri, and S. Kumar, Phys. Rev. E PLEEE8 1539-3755 79, 031930 (2009). 10.1103/PhysRevE.79.031930
31. J.F. Allemand, D. Bensimon, R. Lavery, and V. Croquette, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 95, 14152 (1998). 10.1073/pnas.95.24.14152
32. M. Rief, H. Clausen-Schaumann, and H.E. Gaub, Nat. Struct. Biol. 6, 346 (1999). NSBIEW 1072-8368 10.1038/7582
33. C.P. Calderon, W.-H. Chen, K.-J. Lin, N.C. Harris, and C.-H. Kiang, J. Phys. Condens. Matter JCOMEL 0953-8984 21, 034114 (2009). 10.1088/0953-8984/21/ 3/034114
34. S. Whitelam, S. Pronk, and P.L. Geissler, J. Chem. Phys. 129, 205101 (2008). JCPSA6 0021-9606 10.1063/1.3009266
35. P.T.X. Li, D. Collin, S.B. Smith, C. Bustamante, and I. Tinoco, Jr., Biophys. J. 90, 250 (2006). BIOJAU 0006-3495 10.1529/biophysj.105.068049
36. P. Szymczak and M. Cieplak, J. Phys. Condens. Matter JCOMEL 0953-8984 18, L21 (2006). 10.1088/0953-8984/18/1/L04
37. L. Dougan, G. Feng, H. Lu, and J.M. Fernandez, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 105, 3185 (2008). 10.1073/pnas.0706075105
38. B. Schuler, E.A. Lipman, and W.A. Eaton, Nature (London) NATUAS 0028-0836 419, 743 (2002). 10.1038/nature01060
39. R.B. Best, S.B. Fowler, J.L. Toca-Herrera, and J. Clarke, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 99, 12143 (2002). 10.1073/pnas.192351899
40. D. Watkins, S. Mohan, G.B. Koudelka, and L.D. Williams, J. Mol. Biol. 396, 1145 (2010). JMOBAK 0022-2836 10.1016/j.jmb.2009.12.050
41. J. Guhaniyogi and G. Brewer, Gene 265, 11 (2001). GENED6 03781119 10.1016/S0378-1119(01)00350-X
42. Z. Lv, H. Wei, B. Li, and E. Wang, Analyst (Amsterdam) 134, 1647 (2009). ANLYAG 0365-4885 10.1039/B909069J
43. G. Song, C. Chen, X. Qu, D. Miyoshi, J. Ren, and N. Sugimoto, Adv. Mater. 20, 706 (2008). ADVMEW 0935-9648 10.1002/adma.200702224
44. G. Wang and K.M. Vasquez, Mutat. Res. 598, 103 (2006). MUREAV 0027-5107 10.1016/j.mrfmmm.2006.01.019