메뉴 건너뛰기




Volumn 60, Issue 11, 2010, Pages 2639-2646

Slackia piriformis sp. nov. and Collinsella tanakaei sp. nov., new members of the family Coriobacteriaceae, isolated from human faeces

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; RNA 16S;

EID: 78649234849     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.017533-0     Document Type: Article
Times cited : (45)

References (42)
  • 1
    • 0026675742 scopus 로고
    • DNA diversity among clinical isolates of Helicobacter pylori detected by PCR-based RAPD fingerprinting
    • Akopyanz, N., Bukanov, N. O., Westblom, T. U., Kresovich, S. & Berg, D. E. (1992). DNA diversity among clinical isolates of Helicobacter pylori detected by PCR-based RAPD fingerprinting. Nucleic Acids Res 20, 5137-5142.
    • (1992) Nucleic Acids Res , vol.20 , pp. 5137-5142
    • Akopyanz, N.1    Bukanov, N.O.2    Westblom, T.U.3    Kresovich, S.4    Berg, D.E.5
  • 2
    • 85007742705 scopus 로고
    • Effect of galactooligosaccharides on calcium absorption and preventing bone loss in ovariectomized rats
    • Chonan, O., Matsumoto, K. & Watanuki, M. (1995). Effect of galactooligosaccharides on calcium absorption and preventing bone loss in ovariectomized rats. Biosci Biotechnol Biochem 59, 236-239.
    • (1995) Biosci Biotechnol Biochem , vol.59 , pp. 236-239
    • Chonan, O.1    Matsumoto, K.2    Watanuki, M.3
  • 3
    • 0024358339 scopus 로고
    • Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains
    • Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229. (Pubitemid 19175038)
    • (1989) International Journal of Systematic Bacteriology , vol.39 , Issue.3 , pp. 224-229
    • Ezaki, T.1    Hashimoto, Y.2    Yabuuchi, E.3
  • 4
    • 0025707173 scopus 로고
    • Rapid procedure to determine the DNA base composition from small amounts of Gram-positive bacteria
    • Ezaki, T., Saidi, S. M., Liu, S. L., Hashimoto, Y., Yamamoto, H. & Yabuuchi, E. (1990). Rapid procedure to determine the DNA base composition from small amounts of gram-positive bacteria. FEMS Microbiol Lett 55, 127-130. (Pubitemid 20066056)
    • (1990) FEMS Microbiology Letters , vol.67 , Issue.1-2 , pp. 127-130
    • Ezaki, T.1    Saidi, S.M.2    Liu, S.-L.3    Hashimoto, Y.4    Yamamoto, H.5    Yabuuchi, E.6
  • 5
    • 0003437299 scopus 로고    scopus 로고
    • version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA
    • Felsenstein, J. (2004). PHYLIP (phylogeny inference package) version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
    • (2004) PHYLIP (Phylogeny Inference Package)
    • Felsenstein, J.1
  • 6
    • 0242578620 scopus 로고    scopus 로고
    • A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
    • DOI 10.1080/10635150390235520
    • Guindon, S. & Gascuel, O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52, 696-704. (Pubitemid 37365050)
    • (2003) Systematic Biology , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 7
    • 0033781871 scopus 로고    scopus 로고
    • Development of 16S rRNA-based probes for the Coriobacterium group and the Atopobium cluster and their application for enumeration of Coriobacteriaceae in human feces from volunteers of different age groups
    • Harmsen, H. J. M., Wildeboer-Veloo, A. C. M., Grijpstra, J., Knol, J., Degener, J. E. & Welling, G. W. (2000). Development of 16S rRNA-based probes for the Coriobacterium group and the Atopobium cluster and their application for enumeration of Coriobacteriaceae in human feces from volunteers of different age groups. Appl Environ Microbiol 66, 4523-4527.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 4523-4527
    • Harmsen, H.J.M.1    Wildeboer-Veloo, A.C.M.2    Grijpstra, J.3    Knol, J.4    Degener, J.E.5    Welling, G.W.6
  • 8
    • 0003535096 scopus 로고
    • 4th edn. Blacksburg, VA: Virginia Polytechnic Institute and State University
    • Holdeman, L. V., Cato, E. P. & Moore, W. E. C. (1977). Anaerobe Laboratory Manual, 4th edn. Blacksburg, VA: Virginia Polytechnic Institute and State University.
    • (1977) Anaerobe Laboratory Manual
    • Holdeman, L.V.1    Cato, E.P.2    Moore, W.E.C.3
  • 9
    • 77955617234 scopus 로고    scopus 로고
    • Slackia equolifaciens sp. nov., a human intestinal bacterium capable of producing equol
    • Jin, J.-S., Kitahara, M., Sakamoto, M., Hattori, M. & Benno, Y. (2010). Slackia equolifaciens sp. nov., a human intestinal bacterium capable of producing equol. Int J Syst Evol Microbiol 60, 1721-1724.
    • (2010) Int J Syst Evol Microbiol , vol.60 , pp. 1721-1724
    • Jin, J.-S.1    Kitahara, M.2    Sakamoto, M.3    Hattori, M.4    Benno, Y.5
  • 10
    • 0033804107 scopus 로고    scopus 로고
    • Emendation of genus Collinsella and proposal of Collinsella stercoris sp. nov. and Collinsella intestinalis sp. nov
    • Kageyama, A. & Benno, Y. (2000). Emendation of genus Collinsella and proposal of Collinsella stercoris sp. nov. and Collinsella intestinalis sp. nov. Int J Syst Evol Microbiol 50, 1767-1774.
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 1767-1774
    • Kageyama, A.1    Benno, Y.2
  • 11
    • 0032899737 scopus 로고    scopus 로고
    • Phylogenetic and phenotypic evidence for the transfer of Eubacterium aerofaciens to the genus Collinsella as Collinsella aerofaciens gen. nov., comb. nov
    • Kageyama, A., Benno, Y. & Nakase, T. (1999). Phylogenetic and phenotypic evidence for the transfer of Eubacterium aerofaciens to the genus Collinsella as Collinsella aerofaciens gen. nov., comb. nov. Int J Syst Bacteriol 49, 557-565.
    • (1999) Int J Syst Bacteriol , vol.49 , pp. 557-565
    • Kageyama, A.1    Benno, Y.2    Nakase, T.3
  • 12
    • 34447104397 scopus 로고    scopus 로고
    • The Fecal Microbiota of Irritable Bowel Syndrome Patients Differs Significantly from That of Healthy Subjects
    • DOI 10.1053/j.gastro.2007.04.005, PII S0016508507007342
    • Kassinen, A., Krogius-Kurikka, L., Mäkivuokko, H., Rinttilä, T., Paulin, L., Corander, J., Malinen, E., Apajalahti, J. & Palva, A. (2007). The fecal microbiota of irritable bowel syndrome patients differs significantly from that of healthy subjects. Gastroenterology 133, 24-33. (Pubitemid 47031125)
    • (2007) Gastroenterology , vol.133 , Issue.1 , pp. 24-33
    • Kassinen, A.1    Krogius-Kurikka, L.2    Makivuokko, H.3    Rinttila, T.4    Paulin, L.5    Corander, J.6    Malinen, E.7    Apajalahti, J.8    Palva, A.9
  • 14
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 15
    • 77956800518 scopus 로고
    • Lipid and cell-wall analysis in bacterial systematics
    • Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
    • (1987) Methods Microbiol , vol.19 , pp. 161-207
    • Komagata, K.1    Suzuki, K.2
  • 16
    • 0023752959 scopus 로고
    • Fatty acids, antibiotic resistance, and deoxyribonucleic acid homology groups of Bradyrhizobium japonicum
    • Kuykendall, L. D., Roy, M. A., O'Neill, J. J. & Devine, T. E. (1988). Fatty acids, antibiotic resistance, and deoxyribonucleic acid homology groups of Bradyrhizobium japonicum. Int J Syst Bacteriol 38, 358-361.
    • (1988) Int J Syst Bacteriol , vol.38 , pp. 358-361
    • Kuykendall, L.D.1    Roy, M.A.2    O'Neill, J.J.3    Devine, T.E.4
  • 17
    • 0016954843 scopus 로고
    • Peptococcus heliotrinreducans, sp. nov., a cytochrome-producing anaerobe which metabolizes pyrrolizidine alkaloids
    • Lanigan, G. W. (1976). Peptococcus heliotrinreducans, sp. nov., a cytochrome-producing anaerobe which metabolizes pyrrolizidine alkaloids. J Gen Microbiol 94, 1-10.
    • (1976) J Gen Microbiol , vol.94 , pp. 1-10
    • Lanigan, G.W.1
  • 19
    • 33845901507 scopus 로고    scopus 로고
    • Microbial ecology: Human gut microbes associated with obesity
    • DOI 10.1038/4441022a, PII 4441022A
    • Ley, R. E., Turnbaugh, P. J., Klein, S. & Gordon, J. I. (2006). Microbial ecology: human gut microbes associated with obesity. Nature 444, 1022-1023. (Pubitemid 46018512)
    • (2006) Nature , vol.444 , Issue.7122 , pp. 1022-1023
    • Ley, R.E.1    Turnbaugh, P.J.2    Klein, S.3    Gordon, J.I.4
  • 22
    • 0021919480 scopus 로고
    • Rapid and sensitive protein similarity searches
    • Lipman, D. J. & Pearson, W. R. (1985). Rapid and sensitive protein similarity searches. Science 227, 1435-1441.
    • (1985) Science , vol.227 , pp. 1435-1441
    • Lipman, D.J.1    Pearson, W.R.2
  • 23
  • 24
    • 62149133476 scopus 로고    scopus 로고
    • Isolation of a human intestinal bacterium capable of daidzein and genistein conversion
    • Matthies, A., Blaut, M. & Braune, A. (2009). Isolation of a human intestinal bacterium capable of daidzein and genistein conversion. Appl Environ Microbiol 75, 1740-1744.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 1740-1744
    • Matthies, A.1    Blaut, M.2    Braune, A.3
  • 25
    • 0019982011 scopus 로고
    • Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters, including hydroxy acids
    • Miller, L. T. (1982). Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters, including hydroxy acids. J Clin Microbiol 16, 584-586.
    • (1982) J Clin Microbiol , vol.16 , pp. 584-586
    • Miller, L.T.1
  • 26
    • 0031790825 scopus 로고    scopus 로고
    • Phylogenetic analysis of the genus Bifidobacterium and related genera based on 16S rDNA sequences
    • Miyake, T., Watanabe, K., Watanabe, T. & Oyaizu, H. (1998). Phylogenetic analysis of the genus Bifidobacterium and related genera based on 16S rDNA sequences. Microbiol Immunol 42, 661-667. (Pubitemid 28485452)
    • (1998) Microbiology and Immunology , vol.42 , Issue.10 , pp. 661-667
    • Miyake, T.1    Watanabe, K.2    Watanabe, T.3    Oyaizu, H.4
  • 27
    • 58949087140 scopus 로고    scopus 로고
    • Dialister succinatiphilus sp. nov. and Barnesiella intestinihominis sp. nov., isolated from human faeces
    • Morotomi, M., Nagai, F., Sakon, H. & Tanaka, R. (2008). Dialister succinatiphilus sp. nov. and Barnesiella intestinihominis sp. nov., isolated from human faeces. Int J Syst Evol Microbiol 58, 2716-2720.
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 2716-2720
    • Morotomi, M.1    Nagai, F.2    Sakon, H.3    Tanaka, R.4
  • 28
    • 70349319857 scopus 로고    scopus 로고
    • Paraprevotella clara gen. nov. sp. nov., and Paraprevotella xylaniphila sp. nov., new members of the family 'Prevotellaceae' isolated from human faeces
    • Morotomi, M., Nagai, F., Sakon, H. & Tanaka, R. (2009). Paraprevotella clara gen. nov. sp. nov., and Paraprevotella xylaniphila sp. nov., new members of the family 'Prevotellaceae' isolated from human faeces. Int J Syst Evol Microbiol 59, 1895-1900.
    • (2009) Int J Syst Evol Microbiol , vol.59 , pp. 1895-1900
    • Morotomi, M.1    Nagai, F.2    Sakon, H.3    Tanaka, R.4
  • 29
    • 77955651299 scopus 로고    scopus 로고
    • Succinatimonas hippei gen. nov., sp. nov., isolated from human faeces
    • Morotomi, M., Nagai, F., Watanabe, Y. & Tanaka, R. (2010). Succinatimonas hippei gen. nov., sp. nov., isolated from human faeces. Int J Syst Evol Microbiol 60, 1788-1793.
    • (2010) Int J Syst Evol Microbiol , vol.60 , pp. 1788-1793
    • Morotomi, M.1    Nagai, F.2    Watanabe, Y.3    Tanaka, R.4
  • 30
    • 69449092649 scopus 로고    scopus 로고
    • Parasutterella excrementihominis gen. nov., sp. nov., a novel member of the family Alcaligenaceae isolated from human faeces
    • Nagai, F., Morotomi, M., Sakon, H. & Tanaka, R. (2009). Parasutterella excrementihominis gen. nov., sp. nov., a novel member of the family Alcaligenaceae isolated from human faeces. Int J Syst Evol Microbiol 59, 1793-1797.
    • (2009) Int J Syst Evol Microbiol , vol.59 , pp. 1793-1797
    • Nagai, F.1    Morotomi, M.2    Sakon, H.3    Tanaka, R.4
  • 31
    • 77953318953 scopus 로고    scopus 로고
    • Alistipes indistinctus sp. nov., and Odoribacter laneus sp. nov., common members of the human intestinal microbiota isolated from faeces
    • Nagai, F., Morotomi, M., Watanabe, Y., Sakon, H. & Tanaka, R. (2010). Alistipes indistinctus sp. nov., and Odoribacter laneus sp. nov., common members of the human intestinal microbiota isolated from faeces. Int J Syst Evol Microbiol 60, 1296-1302.
    • (2010) Int J Syst Evol Microbiol , vol.60 , pp. 1296-1302
    • Nagai, F.1    Morotomi, M.2    Watanabe, Y.3    Sakon, H.4    Tanaka, R.5
  • 32
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: An application to display phylogenetic trees on personal computers
    • Page, R. D. M. (1996). TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12, 357-358.
    • (1996) Comput Appl Biosci , vol.12 , pp. 357-358
    • Page, R.D.M.1
  • 34
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 35
    • 47249135018 scopus 로고    scopus 로고
    • Sutterella parvirubra sp. nov. and Megamonas funiformis sp. nov., isolated from human faeces
    • Sakon, H., Nagai, F., Morotomi, M. & Tanaka, R. (2008). Sutterella parvirubra sp. nov. and Megamonas funiformis sp. nov., isolated from human faeces. Int J Syst Evol Microbiol 58, 970-975.
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 970-975
    • Sakon, H.1    Nagai, F.2    Morotomi, M.3    Tanaka, R.4
  • 36
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • DOI 10.1093/molbev/msm092
    • Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetic analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599. (Pubitemid 47236692)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 37
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • DOI 10.1093/nar/25.24.4876
    • Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882. (Pubitemid 28022245)
    • (1997) Nucleic Acids Research , vol.25 , Issue.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 39
    • 0032955594 scopus 로고    scopus 로고
    • The family Coriobacteriaceae: Reclassification of Eubacterium exiguum (Poco et al. 1996) and Peptostreptococcus heliotrinreducens (Lanigan 1976) as Slackia exigua gen. nov., comb. nov. and Slackia heliotrinireducens gen. nov., comb. nov., and Eubacterium lentum (Prevot 1938) as Eggerthella lenta gen. nov., comb. nov
    • Wade, W. G., Downes, J., Dymock, D., Hiom, S. J., Weightman, A. J., Dewhirst, F. E., Paster, B. J., Tzellas, N. & Coleman, B. (1999). The family Coriobacteriaceae: reclassification of Eubacterium exiguum (Poco et al. 1996) and Peptostreptococcus heliotrinreducens (Lanigan 1976) as Slackia exigua gen. nov., comb. nov. and Slackia heliotrinireducens gen. nov., comb. nov., and Eubacterium lentum (Prevot 1938) as Eggerthella lenta gen. nov., comb. nov. Int J Syst Bacteriol 49, 595-600.
    • (1999) Int J Syst Bacteriol , vol.49 , pp. 595-600
    • Wade, W.G.1    Downes, J.2    Dymock, D.3    Hiom, S.J.4    Weightman, A.J.5    Dewhirst, F.E.6    Paster, B.J.7    Tzellas, N.8    Coleman, B.9
  • 40
    • 3242730413 scopus 로고    scopus 로고
    • DNA microarray analysis of predominant human intestinal bacteria in fecal samples
    • Wang, R. F., Beggs, M. L., Erickson, B. D. & Cerniglia, C. E. (2004). DNA microarray analysis of predominant human intestinal bacteria in fecal samples. Mol Cell Probes 18, 223-234.
    • (2004) Mol Cell Probes , vol.18 , pp. 223-234
    • Wang, R.F.1    Beggs, M.L.2    Erickson, B.D.3    Cerniglia, C.E.4
  • 41
    • 77955652017 scopus 로고    scopus 로고
    • Bacteroides clarus sp. nov., Bacteroides fluxus sp. nov. and Bacteroides oleiciplenus sp. nov., isolated from human faeces
    • Watanabe, Y., Nagai, F., Morotomi, M., Sakon, H. & Tanaka, R. (2010). Bacteroides clarus sp. nov., Bacteroides fluxus sp. nov. and Bacteroides oleiciplenus sp. nov., isolated from human faeces. Int J Syst Evol Microbiol 60, 1864-1869.
    • (2010) Int J Syst Evol Microbiol , vol.60 , pp. 1864-1869
    • Watanabe, Y.1    Nagai, F.2    Morotomi, M.3    Sakon, H.4    Tanaka, R.5
  • 42
    • 0033759712 scopus 로고    scopus 로고
    • Colonization of the stratified squamous epithelium of the non-secreting area of horse stomach by lactobacilli
    • Yuki, N., Shimazaki, T., Kushiro, A., Watanabe, K., Uchida, K., Yuyama, T. & Morotomi, M. (2000). Colonization of the stratified squamous epithelium of the non-secreting area of horse stomach by lactobacilli. Appl Environ Microbiol 66, 5030-5034.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 5030-5034
    • Yuki, N.1    Shimazaki, T.2    Kushiro, A.3    Watanabe, K.4    Uchida, K.5    Yuyama, T.6    Morotomi, M.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.