Eco-evolutionary dynamics, coding structure and the information threshold

BMC Evolutionary Biology

Volumn 10, Issue 1, 2010, Pages

  De Boer, Folkert K ^a   Hogeweg, Paulien ^a  

^a UTRECHT UNIVERSITY   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

EMERGENCE; ERROR ANALYSIS; GENETIC STRUCTURE; GENOME; GENOTYPE; MUTATION; PHENOTYPE; SELECTION; SPATIAL ANALYSIS; THRESHOLD;

ALGORITHM; ANIMAL; ARTICLE; BIOLOGICAL MODEL; ECOSYSTEM; GENETIC CODE; GENOME; GENOTYPE; MOLECULAR EVOLUTION; MUTATION; PREDATION;

ALGORITHMS; ANIMALS; ECOSYSTEM; EVOLUTION, MOLECULAR; GENETIC CODE; GENOME; GENOTYPE; MODELS, GENETIC; MUTATION; PREDATORY BEHAVIOR;

EID: 78549244458     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-10-361     Document Type: Article

References (26)

1. Selforganization of matter and the evolution of biological macromolecules. M Eigen, Naturwissenschaften 1971 58 10 465 523 10.1007/BF00623322 4942363
2. Models of Evolution. J Maynard Smith JFY Brook field, Proceedings of the Royal Society of London. Series B, Biological Sciences 1983 219 315 325 10.1098/rspb.1983.0076
3. The integration of the earliest genetic information. E Szathmry, Trends in Ecology & Evolution 1989 4 7 200 204
4. Smoothness within ruggedness: the role of neutrality in adaptation. MA Huynen PF Stadler W Fontana, Proceedings of the National Academy of Sciences of the United States of America 1996 93 397 401 10.1073/pnas.93.1.397 8552647
5. Phenotypic error threshold; additivity and epistasis in RNA evolution. N Takeuchi P Poorthuis P Hogeweg, BMC Evolutionary Biology 2005 5 9 10.1186/1471-2148-5-9 15691379
6. The Hypercycle. M Eigen P Schuster, Naturwissenschaften 1978 65 7 41 10.1007/BF00420631
7. Origin of life: The RNA world. W Gilbert, Nature 1986 319 6055 618 618 10.1038/319618a0
8. Spatial Models of Prebiotic Evolution: Soup Before Pizza? I Scheuring T Czrn P Szabá G Krolyi Z Toroczkai, Origins of Life and Evolution of Biospheres 2003 33 4 319 355 10.1023/A:1025742505324
9. Spiral wave structure in prebiotic evolution: Hypercycles stable against parasites. M Boerlijst P Hogeweg, Physica D. Nonlinear Phenomena 1991 48 17 28 10.1016/0167-2789(91)90049-F
10. Multilevel Selection in Models of Prebiotic Evolution: Compartments and Spatial Self-organization. P Hogeweg N Takeuchi, Origins of Life and Evolution of Biospheres 2003 33 4 375 403 10.1023/A:1025754907141
11. Group selection of early replicators and the origin of life. E Szathmry L Demeter, Journal of Theoretical Biology 1987 128 4 463 486 10.1016/S0022- 5193(87)80191-1 2451771
12. Prebiotic replicase evolution in a surface-bound metabolic system: parasites as a source of adaptive evolution. B Konnyu T Czaran E Szathmary, BMC Evolutionary Biology 2008 8 267 10.1186/1471-2148-8-267 18826645
13. Individual-and population-based diversity in restriction-modification systems. L Pagie P Hogeweg, Bulletin of Mathematical Biology 2000 62 4 759 774 10.1006/bulm.2000.0177 10938631
14. Evolution of resource cycling in ecosystems and individuals. A Crombach P Hogeweg, BMC Evolutionary Biology 2009 9 122 10.1186/1471-2148-9-122 19486519
15. Coevolution and Ecosystem Based Problem Solving. F de Boer P Hogeweg, Under Review 2010
16. Investigating the success of spatial coevolution. N Williams M Mitchell, Proceedings of the 2005 conference on Genetic and evolutionary computation Washington DC, USA: ACM 2005 523 530 full-text
17. The Role of Speciation in Spatial Coevolutionary Function Approximation. FK de Boer P Hogeweg, Proceedings of the 2007 Genetic and Evolutionary Computation Conference 2007 2437 2441 full-text
18. Evolutionary consequences of coevolving targets. L Pagie P Hogeweg, Evolutionary Computation 1997 5 4 401 418 10.1162/evco.1997.5.4.401 10021765
19. Optimizing epochal evolutionary search: population-size independent theory. E van Nimwegen JP Crutch field, Computer Methods in Applied Mechanics and Engineering 2000 186 2-4 171 194 10.1016/S0045-7825(99)00383-7
20. Optimizing Epochal Evolutionary Search: Population-Size Dependent Theory. EV Nimwegen JP Crutch field, Machine Learning 2001 45 77 114 10.1023/A:1010928206141
21. Error-threshold exists in fitness landscapes with lethal mutants. N Takeuchi P Hogeweg, BMC Evolutionary Biology 2007 7 15 10.1186/1471-2148-7-15 17286853
22. Evolvability is a selectable trait. DJ Earl MW Deem, Proceedings of the National Academy of Sciences of the United States of America 2004 101 32 11531 11536 10.1073/pnas.0404656101 15289608
23. Collective properties of evolving molecular quasispecies. M Stich C Briones S Manrubia, BMC Evolutionary Biology 2007 7 110 10.1186/1471-2148-7-110 17620110
24. Evolutionary coupling between the deleteriousness of gene mutations and the amount of non-coding sequences. C Knibbe O Mazet F Chaudier J Fayard G Beslon, Journal of Theoretical Biology 2007 244 4 621 630 10.1016/j.jtbi.2006. 09.005 17055537
25. Structurally complex and highly active RNA ligases derived from random RNA sequences. E Ekland J Szostak D Bartel, Science 1995 269 5222 364 370 10.1126/science.7618102 7618102
26. Evolution of complexity in RNA-like replicator systems. N Takeuchi P Hogeweg, Biology Direct 2008 3 11 10.1186/1745-6150-3-11 18371199