-
1
-
-
0036008792
-
A promoter-trap vector for clock-controlled genes in the cyanobacterium synechocystis sp. PCC 6803
-
S. Aoki, T. Kondo, and M. Ishiura, "A Promoter-Trap Vector for Clock-Controlled Genes in the Cyanobacterium Synechocystis sp. PCC 6803, " J. Microbiological Methods, vol. 49, no. 3, pp. 265-274, 2002.
-
(2002)
J. Microbiological Methods
, vol.49
, Issue.3
, pp. 265-274
-
-
Aoki, S.1
Kondo, T.2
Ishiura, M.3
-
2
-
-
33847691603
-
Structural and biochemical characterization of a cyanobacterium circadian clock-modifier protein
-
K. Arita, H. Hashimoto, K. Igari, M. Akaboshi, S. Kutsuna, M. Sato, and T. Shimizu, "Structural and Biochemical Characterization of a Cyanobacterium Circadian Clock-Modifier Protein, " J. Biological Chemistry, vol. 282, no. 2, pp. 1128-1135, 2007.
-
(2007)
J. Biological Chemistry
, vol.282
, Issue.2
, pp. 1128-1135
-
-
Arita, K.1
Hashimoto, H.2
Igari, K.3
Akaboshi, M.4
Kutsuna, S.5
Sato, M.6
Shimizu, T.7
-
3
-
-
21344470923
-
Circadian rhythms from multiple oscillators: Lessons from diverse organisms
-
D. Bell-Pedersen, V. M. Cassone, D. J. Earnest, S. S. Golden, P. E. Hardin, T. L. Thomas, and M. J. Zoran, "Circadian Rhythms from Multiple Oscillators: Lessons from Diverse Organisms, " Nature Rev. Genetics, vol. 6, no. 7, pp. 544-556, 2005.
-
(2005)
Nature Rev. Genetics
, vol.6
, Issue.7
, pp. 544-556
-
-
Bell-Pedersen, D.1
Cassone, V.M.2
Earnest, D.J.3
Golden, S.S.4
Hardin, P.E.5
Thomas, T.L.6
Zoran, M.J.7
-
5
-
-
34447543003
-
Global gene expression patterns of nostoc punctiforme in steady-state dinitrogen-grown heterocyst-containing cultures and at single time points during the differentiation of akinetes and hormogonia
-
E. L. Campbell, M. L. Summers, H. Christman, M. E. Martin, and J. C. Meeks, "Global Gene Expression Patterns of Nostoc punctiforme in Steady-State Dinitrogen-Grown Heterocyst-Containing Cultures and at Single Time Points during the Differentiation of Akinetes and Hormogonia, " J. Bacteriology, vol. 189, no. 14, pp. 5247-5256, 2007.
-
(2007)
J. Bacteriology
, vol.189
, Issue.14
, pp. 5247-5256
-
-
Campbell, E.L.1
Summers, M.L.2
Christman, H.3
Martin, M.E.4
Meeks, J.C.5
-
7
-
-
0003061304
-
Circadian rhythm in amino acid uptake by synechococcus RF-1
-
T. H. Chen, T. L. Chen, L. M. Hung, and T. C. Huang, "Circadian Rhythm in Amino Acid Uptake by Synechococcus RF-1, " Plant Physiology, vol. 97, no. 1, pp. 55-59, 1991.
-
(1991)
Plant Physiology
, vol.97
, Issue.1
, pp. 55-59
-
-
Chen, T.H.1
Chen, T.L.2
Hung, L.M.3
Huang, T.C.4
-
8
-
-
33947230522
-
Functioning and robustness of a bacterial circadian clock
-
article no. 90
-
S. Clodong, U. Dühring, L. Kronk, A. Wilde, I. Axmann, H. Herzel, and M. Kollmann, "Functioning and Robustness of a Bacterial Circadian Clock, " Molecular Systems Biology, vol. 3, article no. 90, 2007.
-
(2007)
Molecular Systems Biology
, vol.3
-
-
Clodong, S.1
Dühring, U.2
Kronk, L.3
Wilde, A.4
Axmann, I.5
Herzel, H.6
Kollmann, M.7
-
10
-
-
67649117757
-
Effect of continuous light on diurnal rhythms in cyanothece sp. ATCC 51142
-
article no. 226
-
T. R. Elvitigala, J. Stöckel, B. K. Ghosh, and H. B. Pakrasis, "Effect of Continuous Light on Diurnal Rhythms in Cyanothece sp. ATCC 51142, " BMC Genomics, vol. 10, article no. 226, 2009.
-
(2009)
BMC Genomics
, vol.10
-
-
Elvitigala, T.R.1
Stöckel, J.2
Ghosh, B.K.3
Pakrasis, H.B.4
-
11
-
-
32644489285
-
Hourglass model for a protein-based circadian oscillator
-
article no. 038303
-
E. Emberly and N. S. Wingreen, "Hourglass Model for a Protein-Based Circadian Oscillator, " Physical Rev. Letters, vol. 96, no. 3, article no. 038303, 2006.
-
(2006)
Physical Rev. Letters
, vol.96
, Issue.3
-
-
Emberly, E.1
Wingreen, N.S.2
-
12
-
-
0347936336
-
Cyanobacterial circadian rhythms
-
S. S. Golden, M. Ishiura, C. H. Johnson, and T. Kondo, "Cyanobacterial Circadian Rhythms, " Ann. Rev. Plant Physiology and Plant Molecular Biology, vol. 48, pp. 327-354, 1997.
-
(1997)
Ann. Rev. Plant Physiology and Plant Molecular Biology
, vol.48
, pp. 327-354
-
-
Golden, S.S.1
Ishiura, M.2
Johnson, C.H.3
Kondo, T.4
-
14
-
-
0032483510
-
Expression of a gene cluster KaiABC as a circadian feedback process in cyanobacteria
-
M. Ishiura, S. Kutsuna, S. Aoki, H. Iwasaki, C. R. Andersson, A. Tanabe, S. S. Golden, C. H. Johnson, and T. Kondo, "Expression of a Gene Cluster KaiABC as a Circadian Feedback Process in Cyanobacteria, " Science, vol. 281, pp. 1519-1523, 1998.
-
(1998)
Science
, vol.281
, pp. 1519-1523
-
-
Ishiura, M.1
Kutsuna, S.2
Aoki, S.3
Iwasaki, H.4
Andersson, C.R.5
Tanabe, A.6
Golden, S.S.7
Johnson, C.H.8
Kondo, T.9
-
15
-
-
3042844051
-
Circadian rhythms: As time glows by in bacteria
-
C. H. Johnson, "Circadian Rhythms: As Time Glows by in Bacteria, " Nature, vol. 430, pp. 23-24, 2004.
-
(2004)
Nature
, vol.430
, pp. 23-24
-
-
Johnson, C.H.1
-
16
-
-
0037462789
-
Circadian formation of clock protein complexes by KaiA, KaiB, KaiC, and SasA in cyanobacteria
-
H. Kageyama, T. Kondo, and H. Iwasaki, "Circadian Formation of Clock Protein Complexes by KaiA, KaiB, KaiC, and SasA in Cyanobacteria, " J. Biological Chemistry, vol. 278, pp. 2388-2395, 2003.
-
(2003)
J. Biological Chemistry
, vol.278
, pp. 2388-2395
-
-
Kageyama, H.1
Kondo, T.2
Iwasaki, H.3
-
17
-
-
0037881861
-
KaiB functions as an attenuator of KaiC phosphorylation in the cyanobacterial circadian clock system
-
Y. Kitayama, H. Iwasaki, T. Nishiwaki, and T. Kondo, "KaiB Functions as an Attenuator of KaiC Phosphorylation in the Cyanobacterial Circadian Clock System, " The EMBO J., vol. 22, pp. 2127-2134, 2003.
-
(2003)
The EMBO J.
, vol.22
, pp. 2127-2134
-
-
Kitayama, Y.1
Iwasaki, H.2
Nishiwaki, T.3
Kondo, T.4
-
18
-
-
0031032072
-
Circadian rhythms in rapidly dividing cyanobacteria
-
T. Kondo, T. Mori, N. V. Lebedeva, S. Aoki, M. Ishiura, and S. S. Golden, "Circadian Rhythms in Rapidly Dividing Cyanobacteria, " Science, vol. 275, pp. 224-227, 1996.
-
(1996)
Science
, vol.275
, pp. 224-227
-
-
Kondo, T.1
Mori, T.2
Lebedeva, N.V.3
Aoki, S.4
Ishiura, M.5
Golden, S.S.6
-
19
-
-
0020006444
-
Mathematical model of the human circadian system with two interacting oscillators
-
R. E. Kronauer, C. A. Czeisler, S. F. Pilato, M. C. Moore-Ede, and E. D. Weitzman, "Mathematical Model of the Human Circadian System with Two Interacting Oscillators, " Am. J. Physiology-Regulatory, Integrative and Comparative Physiology, vol. 242, pp. 3-17, 1982.
-
(1982)
Am. J. Physiology-Regulatory, Integrative and Comparative Physiology
, vol.242
, pp. 3-17
-
-
Kronauer, R.E.1
Czeisler, C.A.2
Pilato, S.F.3
Moore-Ede, M.C.4
Weitzman, E.D.5
-
20
-
-
0000856704
-
Self-entrainment of a population of coupled non-linear oscillators
-
Y. Kuramoto, "Self-Entrainment of a Population of Coupled Non-Linear Oscillators, " Proc. Int'l Symp. Math. Problems in Theoretical Physics, vol. 39, pp. 420-422, 1975.
-
(1975)
Proc. Int'l Symp. Math. Problems in Theoretical Physics
, vol.39
, pp. 420-422
-
-
Kuramoto, Y.1
-
22
-
-
33748441404
-
A model for the circadian rhythm of cyanobacteria that maintains oscillation without gene expression
-
G. Kurosawa, K. Aihara, and Y. Iwasa, "A Model for the Circadian Rhythm of Cyanobacteria That Maintains Oscillation without Gene Expression, " Biophysical J., vol. 91, pp. 2015-2023, 2006.
-
(2006)
Biophysical J.
, vol.91
, pp. 2015-2023
-
-
Kurosawa, G.1
Aihara, K.2
Iwasa, Y.3
-
23
-
-
0029042379
-
Circadian orchestration of gene expression in cyanobacteria
-
Y. Liu, N. F. Tsinoremas, C. H. Johnson, N. V. Lebedeva, S. S. Golden, M. Ishiura, and T. Kondo, "Circadian Orchestration of Gene Expression in Cyanobacteria, " Genes and Development, vol. 9, pp. 1469-1478, 1995.
-
(1995)
Genes and Development
, vol.9
, pp. 1469-1478
-
-
Liu, Y.1
Tsinoremas, N.F.2
Johnson, C.H.3
Lebedeva, N.V.4
Golden, S.S.5
Ishiura, M.6
Kondo, T.7
-
24
-
-
33746582415
-
Circadian rhythmicity by autocatalysis
-
A. Mehra, C. I. Hong, M. Shi, J. J. Loros, J. C. Dunlap, and P. Ruoff, "Circadian Rhythmicity by Autocatalysis, " PLos Computational Biology, vol. 2, no. 7, pp. 816-823, 2006.
-
(2006)
PLos Computational Biology
, vol.2
, Issue.7
, pp. 816-823
-
-
Mehra, A.1
Hong, C.I.2
Shi, M.3
Loros, J.J.4
Dunlap, J.C.5
Ruoff, P.6
-
25
-
-
33845979486
-
A mathematical model for the Kai-protein-based chemical oscillator and clock gene expression rhythms in cyanobacteria
-
F. Miyoshi, Y. Nakayama, K. Kaizu, H. Iwasaki, and M. Tomita, "A Mathematical Model for the Kai-Protein-Based Chemical Oscillator and Clock Gene Expression Rhythms in Cyanobacteria, " J. Biological Rhythms, vol. 22, pp. 69-80, 2007.
-
(2007)
J. Biological Rhythms
, vol.22
, pp. 69-80
-
-
Miyoshi, F.1
Nakayama, Y.2
Kaizu, K.3
Iwasaki, H.4
Tomita, M.5
-
26
-
-
0029790052
-
Circadian gating of cell division in cyanobacteria growing with average doubling times of less than 24 hours
-
T. Mori, B. Binder, and C. H. Johnson, "Circadian Gating of Cell Division in Cyanobacteria Growing with Average Doubling Times of Less Than 24 Hours, " Proc. Nat'l Academy of Sciences USA, vol. 93, pp. 10183-10188, 1996.
-
(1996)
Proc. Nat'l Academy of Sciences USA
, vol.93
, pp. 10183-10188
-
-
Mori, T.1
Binder, B.2
Johnson, C.H.3
-
27
-
-
33746921993
-
Circadian clocks go in vitro: Purely post-translational oscillators in cyanobacteria
-
article no. 2005.0019
-
F. Naef, "Circadian Clocks Go In Vitro: Purely Post-Translational Oscillators in Cyanobacteria, " Molecular Systems Biology, vol. 1, article no. 2005.0019, 2005.
-
(2005)
Molecular Systems Biology
, vol.1
-
-
Naef, F.1
-
28
-
-
1642555774
-
Global gene repression by KaiC as a master process of prokaryotic circadian system
-
Y. Nakahira, M. Katayama, H. Miyashita, S. Kutsuna, H. Iwasaki, T. Oyama, and T. Kondo, "Global Gene Repression by KaiC as a Master Process of Prokaryotic Circadian System, " Proc. Nat'l Academy of Sciences USA, vol. 101, pp. 881-885, 2004.
-
(2004)
Proc. Nat'l Academy of Sciences USA
, vol.101
, pp. 881-885
-
-
Nakahira, Y.1
Katayama, M.2
Miyashita, H.3
Kutsuna, S.4
Iwasaki, H.5
Oyama, T.6
Kondo, T.7
-
29
-
-
17244373578
-
Reconstitution of circadian oscillation of cyanobacterial KaiC phosphorylation in vitro
-
M. Nakajima, K. Imai, H. Ito, T. Nishiwaki, Y. Murayama, H. Iwasaki, T. Oyama, and T. Kondo, "Reconstitution of Circadian Oscillation of Cyanobacterial KaiC Phosphorylation in Vitro, " Science, vol. 308, pp. 414-415, 2005.
-
(2005)
Science
, vol.308
, pp. 414-415
-
-
Nakajima, M.1
Imai, K.2
Ito, H.3
Nishiwaki, T.4
Murayama, Y.5
Iwasaki, H.6
Oyama, T.7
Kondo, T.8
-
30
-
-
4644310259
-
Role of KaiC phosphorylation in the circadian clock system of synechococcus elongatus PCC 7942
-
T. Nishiwaki, Y. Satomi, M. Nakajima, C. Lee, R. Kiyohara, H. Kageyama, Y. Kitayama, M. Temamoto, A. Yamaguchi, A. Hijikata, M. Go, H. Iwasaki, T. Takao, and T. Kondo, "Role of KaiC Phosphorylation in the Circadian Clock System of Synechococcus elongatus PCC 7942, " Proc. Nat'l Academy of Sciences USA, vol. 101, pp. 13927-13932, 2004.
-
(2004)
Proc. Nat'l Academy of Sciences USA
, vol.101
, pp. 13927-13932
-
-
Nishiwaki, T.1
Satomi, Y.2
Nakajima, M.3
Lee, C.4
Kiyohara, R.5
Kageyama, H.6
Kitayama, Y.7
Temamoto, M.8
Yamaguchi, A.9
Hijikata, A.10
Go, M.11
Iwasaki, H.12
Takao, T.13
Kondo, T.14
-
31
-
-
3242812815
-
Circadian rhythms in the thermophilic cyanobacterium thermosynechococcus elongatus: Compensation of period length over a wide temperature range
-
K. Onai, M. Morishita, S. Itoh, K. Okamoto, and M. Ishiura, "Circadian Rhythms in the Thermophilic Cyanobacterium Thermosynechococcus Elongatus: Compensation of Period Length over a Wide Temperature Range, " J. Bacteriology, vol. 186, no. 15, pp. 4972-4977, 2004.
-
(2004)
J. Bacteriology
, vol.186
, Issue.15
, pp. 4972-4977
-
-
Onai, K.1
Morishita, M.2
Itoh, S.3
Okamoto, K.4
Ishiura, M.5
-
32
-
-
0036898577
-
Microarray data normalization and transformation
-
J. Quackenbush, "Microarray Data Normalization and Transformation, " Nature Genetics, vol. 32, pp. 496-501, 2002.
-
(2002)
Nature Genetics
, vol.32
, pp. 496-501
-
-
Quackenbush, J.1
-
33
-
-
0027471228
-
Unicellular, aerobic nitrogen-fixing cyanobacteria of the genus cyanothece
-
R. J. Reddy, J. B. Haskell, D. M. Sherman, and L. A. Sherman, "Unicellular, Aerobic Nitrogen-Fixing Cyanobacteria of the Genus Cyanothece, " J. Bacteriology, vol. 175, pp. 1284-1292, 1993.
-
(1993)
J. Bacteriology
, vol.175
, pp. 1284-1292
-
-
Reddy, R.J.1
Haskell, J.B.2
Sherman, D.M.3
Sherman, L.A.4
-
34
-
-
0037194790
-
Coordination of circadian timing in mammals
-
S. M. Reppert and D. R. Weaver, "Coordination of Circadian Timing in Mammals, " Nature, vol. 418, pp. 935-941, 2002.
-
(2002)
Nature
, vol.418
, pp. 935-941
-
-
Reppert, S.M.1
Weaver, D.R.2
-
36
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
P. Shannon, A. Markiel, O. Ozier, N. S. Baliga, J. T. Wang, D. Ramage, N. Amin, B. Schwikowski, and T. Ideker, "Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks, " Genome Research, vol. 13, pp. 2498-2504, 2003.
-
(2003)
Genome Research
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
37
-
-
0032429031
-
Diurnal rhythms in metabolism: A day in the life of a unicellular, diazotrophic cyanobacterium
-
L. A. Sherman, P. Meunier, and M. S. Colon-Lopez, "Diurnal Rhythms in Metabolism: A Day in the Life of a Unicellular, Diazotrophic Cyanobacterium, " Photosynthesis Research, vol. 58, pp. 25-42, 1998.
-
(1998)
Photosynthesis Research
, vol.58
, pp. 25-42
-
-
Sherman, L.A.1
Meunier, P.2
Colon-Lopez, M.S.3
-
38
-
-
43149121113
-
Global transcriptomic analysis of cyanothece 51142 reveals robust diurnal oscillation of central metabolic processes
-
J. Stöckel, E. A. Welsh, M. Liberton, R. Kunnavakkam, R. Aurora, and H. B. Pakrasi, "Global Transcriptomic Analysis of Cyanothece 51142 Reveals Robust Diurnal Oscillation of Central Metabolic Processes, " Proc. Nat'l Academy of Sciences USA, vol. 105, pp. 6156-6161, 2008.
-
(2008)
Proc. Nat'l Academy of Sciences USA
, vol.105
, pp. 6156-6161
-
-
Stöckel, J.1
Welsh, E.A.2
Liberton, M.3
Kunnavakkam, R.4
Aurora, R.5
Pakrasi, H.B.6
-
39
-
-
0027519363
-
Coupled oscillators and biological synchronization
-
S. H. Strogatz and I. Stewart, "Coupled Oscillators and Biological Synchronization, " Scientific Am., vol. 269, pp. 102-109, 1993.
-
(1993)
Scientific Am.
, vol.269
, pp. 102-109
-
-
Strogatz, S.H.1
Stewart, I.2
-
40
-
-
44349119272
-
Differential transcriptional analysis of the cyanobacterium cyanothece sp. Strain ATCC 51142 during light-dark and continuous-light growth
-
J. Toepel, E. Welsh, T. C. Summerfield, H. B. Pakrasi, and L. A. Sherman, "Differential Transcriptional Analysis of the Cyanobacterium Cyanothece sp. Strain ATCC 51142 during Light-Dark and Continuous-Light Growth, " J. Bacteriology, vol. 190, pp. 3904-3913, 2008.
-
(2008)
J. Bacteriology
, vol.190
, pp. 3904-3913
-
-
Toepel, J.1
Welsh, E.2
Summerfield, T.C.3
Pakrasi, H.B.4
Sherman, L.A.5
-
41
-
-
0032758081
-
A Simple model of circadian rhythms based on dimerization and proteolysis of per and Tim
-
J. J. Tyson, C. I. Hong, C. D. Thron, and B. Novak, "A Simple Model of Circadian Rhythms Based on Dimerization and Proteolysis of Per and Tim, " Biophysical J., vol. 77, pp. 2411-2417, 1999.
-
(1999)
Biophysical J.
, vol.77
, pp. 2411-2417
-
-
Tyson, J.J.1
Hong, C.I.2
Thron, C.D.3
Novak, B.4
-
43
-
-
0030458712
-
Heterocyst formation
-
C. P. Wolk, "Heterocyst Formation, " Ann. Rev. Genetics, vol. 30, pp. 59-78, 1996.
-
(1996)
Ann. Rev. Genetics
, vol.30
, pp. 59-78
-
-
Wolk, C.P.1
-
44
-
-
0035458732
-
Time zones: A comparative genetics of circadian clocks
-
M. W. Young and S. A. Kay, "Time Zones: A Comparative Genetics of Circadian Clocks, " Nature Rev. Genetics, vol. 2, pp. 702-715, 2001.
-
(2001)
Nature Rev. Genetics
, vol.2
, pp. 702-715
-
-
Young, M.W.1
Kay, S.A.2
|