Projecting genetic diversity and population viability for the fragmented orang-utan population in the Kinabatangan floodplain, Sabah, Malaysia

Endangered Species Research

Volumn 12, Issue 3, 2010, Pages 249-261

  Bruford, Michael W ^a   Ancrenaz, Marc ^b   Chikhi, Lounès ^c   Lackman Ancrenaz, Isabelle ^b   Andau, Mahedi ^d   Ambu, Laurentius ^d   Goossens, Benoît ^a  

^a CARDIFF UNIVERSITY   (United Kingdom)

^b Kinabatangan Orang utan Conservation Project   (Malaysia)

^c École Nationale de Formation Agronomique   (France)

^d SABAH WILDLIFE DEPARTMENT   (Malaysia)

Author keywords

Fragmentation; Genetic diversity; Kinabatangan; Orang utan; Population modeling; VORTEX

Indexed keywords

DIFFERENTIATION; EXTINCTION RISK; FLOODPLAIN; FRAGMENTATION; GENETIC VARIATION; INBREEDING; POPULATION GENETICS; POPULATION MODELING; POPULATION VIABILITY ANALYSIS; PRIMATE; TRANSLOCATION;

EAST MALAYSIA; MALAYSIA; SABAH;

PONGO PYGMAEUS;

EID: 78449287751     PISSN: 18635407     EISSN: 16134796     Source Type: Journal    
DOI: 10.3354/esr00295     Document Type: Article

References (33)

1. Ancrenaz M (ed) (2003) Proceedings of the International Workshop on orang-utan in Sabah, 25-27 August 2003, Kota Kinabalu, Sabah
2. Ancrenaz M, Goossens B, Gimenez O, Sawang A, Lackman-Ancrenaz I (2004) Determination of ape distribution and population size using ground and aerial surveys: a case study with orang-utans in lower Kinabatangan, Sabah, Malaysia. Anim Conserv 7:375-385
3. Asquith NM (2001) Misdirections in conservation biology. Conserv Biol 15:345-352
4. Bouchy P, Theodorou K, Couvet D (2005) Metapopulation viability: influence of migration. Conserv Genet 6:75-85
5. Bowen BW, Roman J (2005) Gaia's handmaidens: the Orlog model for conservation biology. Conserv Biol 19: 1037-1043
6. Frankham R (2003) Genetics and conservation biology. C R Biol 326 (Suppl 1):S22-S29
7. Goossens BG, Chikhi L, Utami SS, de Ruiter JR, Bruford MW (2000) Multiple-samples and multiple-extracts approach for microsatellite analysis of faecal samples. Conserv Genet 1:157-162
8. Goossens B, Chikhi L, Jalil MF, Ancrenaz M and others (2005) Patterns of genetic diversity and migration in increasingly fragmented and declining orang-utan (Pongo pygmaeus) populations from Sabah, Malaysia. Mol Ecol 14:441-456
9. Goossens B, Chikhi L, Ancrenaz M, Lackman-Ancrenaz I, Andau P, Bruford MW (2006a) Genetic signature of anthropogenic population collapse in orang-utans. PLoS Biol 4:e25
10. Goossens B, Setchell JM, James SS, Funk SM and others (2006b) Philopatry and reproductive success in Bornean orang-utans (Pongo pygmaeus). Mol Ecol 15:2577-2588
11. Jalil MF, Cable J, Sinyor J, Lackman-Ancrenaz I, Ancrenaz M, Bruford MW, Goossens B (2008) Riverine effects on mitochondrial structure of Bornean orang-utans (Pongo pygmaeus) at two spatial scales. Mol Ecol 17:2898-2909
12. Keller LF, Waller DM (2002) Inbreeding effects in wild populations. Trends Ecol Evol 17:230-241
13. Keller LF, Arcese P, Smith JNM, Hochachka WM, Stearns SC (1994) Selection against inbred song sparrows during a natural population bottleneck. Nature 372:356-357
14. Keller LF, Jeffery KJ, Arcese P, Beaumont MA, Hochachka WM, Smith JNM, BrufordMW (2001) Immigration and the ephemerality of a natural population bottleneck: evidence from molecular markers. Proc Biol Sci 268:1387-1394
15. Keyghobadi N, Roland J, Matter SF, Strobeck C (2005) Amongand within-patch components of genetic diversity respond at different rates to habitat fragmentation: an empirical demonstration. Proc Biol Sci 272:553-560
16. Lackman-Ancrenaz I, Ancrenaz M, Saburi R (2001). The Kinabatangan orang-utan conservation project. The apes: challenge for the 21st century. Conf Proc, 10-13 May 2000, Brookfield, IL, p 262-265
17. Lacy RC, Borbat M, Pollak JP (2005) VORTEX: a stochastic simulation of the extinction process. Version 9.50. Chicago Zoological Society, Brookfield, IL
18. Madsen T, Shine R, Olsson M, Wittzell H (1999) Restoration of an inbred adder population. Nature 402:34-35
19. Madsen T, Ujvari B, Olsson M (2004) Novel genes continue to enhance population growth in adders (Vipera berus). Biol Conserv 120:145-147
20. Miller PS, Lacy RC (2005) VORTEX: a stochastic simulation of the extinction process. Version 9.50 user's manual. Conservation Breeding Specialist Group (SSC/IUCN), Apple Valley, MN
21. Moritz C (1994) Defining Evolutionary Significant Units for conservation. Trends Ecol Evol 9:373-375
22. Raymond M, Rousset F (1995) Genepop (version 1.2)-population genetics software for exact tests and ecumenicism. J Hered 86(3):248-249
23. Reed JM, Mills LS, Dunning JB, Menges ES and others (2002) Emerging issues in population viability analysis. Conserv Biol 16:7-19
24. Robert A, Couvet D, Sarrazin F (2003) Bottlenecks in large populations: the effect of immigration on population viability. Evol Ecol 17:213-231
25. Saccheri IJ, Brakefield PM (2002) Rapid spread of immigrant genomes into inbred populations. Proc R Soc Lond Ser B Biol Sci 269: 1073-1078
26. Saccheri I, Kuusaari M, Kankare M, Vikman P, Fortelius W, Hanski I (1998) Inbreeding and extinction in a butterfly metapopulation. Nature 392:491-494
27. Schwartz MK, Mills LS (2005) Gene flow after inbreeding leads to higher survival in deer mice. Biol Conserv 123: 413-420
28. Singleton I, Wich S, Husson S, Stephens S and others (eds) (2004) Orangutan population and habitat viability assessment: final report. IUCN/SSC Conservation Breeding Specialist Group, Apple Valley, MN
29. Stockwell CA, Hendry AP, Kinnison MT (2003) Contemporary evolution meets conservation biology. Trends Ecol Evol 18:94-101
30. Talbot SL, Pearce JM, Pierson BJ, Derksen DV, Scribner KT (2003) Molecular status of the dusky Canada goose (Branta canadensis occidentalis): a genetic assessment of a translocation effort. Conserv Genet 4:367-381
31. Tallmon DA, Luikart G, Waples RS (2004) The alluring simplicity and complex reality of genetic rescue. Trends Ecol Evol 19:489-496
32. Utami SS, Goossens B, Bruford MW, de Ruiter JR, van Hooff JARAM (2002) Male bimaturism and reproductive success in Sumatran orang-utans. Behav Ecol 13(5):643-652
33. Wich SA, Utami Atmoko SS, Setia TM, van Schaik CP (2008) Orangutans: geographic variation in behavioural ecology and conservation. Oxford University Press, Oxford