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Volumn 43, Issue 1, 2011, Pages 115-125

Comparative study of the microbial diversity of bulk paddy soil of two rice fields subjected to organic and conventional farming

Author keywords

Agronomic management; Bacterial community diversity; CLPP; Cultivable microbial counts; DGGE fingerprinting; Soil enzymatic activity

Indexed keywords

AGRONOMIC MANAGEMENT; BACTERIAL COMMUNITY; CLPP; DGGE FINGERPRINTING; MICROBIAL COUNT;

EID: 78449248549     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2010.09.021     Document Type: Article
Times cited : (68)

References (48)
  • 1
    • 43649085516 scopus 로고    scopus 로고
    • Comparison of bacterial community structures at main habitats in paddy field ecosystem based on DGGE analysis
    • Asakawa S., Kimura M. Comparison of bacterial community structures at main habitats in paddy field ecosystem based on DGGE analysis. Soil Biology & Biochemistry 2008, 40:1322-1329.
    • (2008) Soil Biology & Biochemistry , vol.40 , pp. 1322-1329
    • Asakawa, S.1    Kimura, M.2
  • 2
    • 0033939897 scopus 로고    scopus 로고
    • Characterization of microbial consortia in paddy rice soil by phospholipid analysis
    • Bai Q., Gattinger A., Zelles L. Characterization of microbial consortia in paddy rice soil by phospholipid analysis. Microbial Ecology 2000, 39:273-281.
    • (2000) Microbial Ecology , vol.39 , pp. 273-281
    • Bai, Q.1    Gattinger, A.2    Zelles, L.3
  • 3
    • 0031864898 scopus 로고    scopus 로고
    • Determinants of soil microbial communities: effects of agricultural management, season, and soil type on phospholipid fatty acid profiles
    • Bossio D.A., Scow K.M., Gunapala N., Graham K.J. Determinants of soil microbial communities: effects of agricultural management, season, and soil type on phospholipid fatty acid profiles. Microbial Ecology 1998, 36:1-12.
    • (1998) Microbial Ecology , vol.36 , pp. 1-12
    • Bossio, D.A.1    Scow, K.M.2    Gunapala, N.3    Graham, K.J.4
  • 4
    • 0018344156 scopus 로고
    • Assay for nanogram quantities of DNA in cellular homogenates
    • Brunk C., Jones K., James T. Assay for nanogram quantities of DNA in cellular homogenates. Analytical Biochemistry 1979, 92:497-500.
    • (1979) Analytical Biochemistry , vol.92 , pp. 497-500
    • Brunk, C.1    Jones, K.2    James, T.3
  • 7
    • 16844384946 scopus 로고    scopus 로고
    • A case study of molinate application in a Portuguese rice field: herbicide dissipation and proposal of a clean-up methodology
    • Castro M., Silva-Ferreira A.C., Manaia C.M., Nunes O.C. A case study of molinate application in a Portuguese rice field: herbicide dissipation and proposal of a clean-up methodology. Chemosphere 2005, 59:1059-1065.
    • (2005) Chemosphere , vol.59 , pp. 1059-1065
    • Castro, M.1    Silva-Ferreira, A.C.2    Manaia, C.M.3    Nunes, O.C.4
  • 9
    • 0036086688 scopus 로고    scopus 로고
    • A comparison of environmental, soil fertility, yield, and economical effects in six cropping systems based on an 8-year experiment in Norway
    • Eltun R., Korsaeth A., Norhdheim O. A comparison of environmental, soil fertility, yield, and economical effects in six cropping systems based on an 8-year experiment in Norway. Agriculture, Ecosystems and Environment 2002, 90:155-168.
    • (2002) Agriculture, Ecosystems and Environment , vol.90 , pp. 155-168
    • Eltun, R.1    Korsaeth, A.2    Norhdheim, O.3
  • 13
    • 33746869300 scopus 로고    scopus 로고
    • Ranking the magnitude of crop and farming system effects on soil microbial biomass and genetic structure of bacterial communities
    • Hartmann M., Fliessbach A., Oberholzer H.-R., Widmer F. Ranking the magnitude of crop and farming system effects on soil microbial biomass and genetic structure of bacterial communities. FEMS Microbiology Ecology 2006, 57:378-388.
    • (2006) FEMS Microbiology Ecology , vol.57 , pp. 378-388
    • Hartmann, M.1    Fliessbach, A.2    Oberholzer, H.-R.3    Widmer, F.4
  • 14
    • 33845521652 scopus 로고    scopus 로고
    • Community structure analyses are more sensitive to differences in soil bacterial communities than anonymous diversity indices
    • Hartmann M., Widmer F. Community structure analyses are more sensitive to differences in soil bacterial communities than anonymous diversity indices. Applied and Environmental Microbiology 2006, 72:7804-7812.
    • (2006) Applied and Environmental Microbiology , vol.72 , pp. 7804-7812
    • Hartmann, M.1    Widmer, F.2
  • 16
    • 0034537565 scopus 로고    scopus 로고
    • Vertical distribution of the methanotrophic community after drainage of rice field soil
    • Henckel T., Jäckel U., Conrad R. Vertical distribution of the methanotrophic community after drainage of rice field soil. FEMS Microbiology Ecology 2001, 34:279-291.
    • (2001) FEMS Microbiology Ecology , vol.34 , pp. 279-291
    • Henckel, T.1    Jäckel, U.2    Conrad, R.3
  • 17
    • 0030739128 scopus 로고    scopus 로고
    • Analysis of actinomycete communities by specific amplification of gene encoding 16SrRNA and gel-electrophoretic separation in denaturing gradients
    • Heuer H., Krsek M., Baker P., Smalla K. Analysis of actinomycete communities by specific amplification of gene encoding 16SrRNA and gel-electrophoretic separation in denaturing gradients. Applied and Environmental Microbiology 1997, 63:3233-3241.
    • (1997) Applied and Environmental Microbiology , vol.63 , pp. 3233-3241
    • Heuer, H.1    Krsek, M.2    Baker, P.3    Smalla, K.4
  • 18
  • 19
    • 85103231360 scopus 로고
    • Carbon utilization and fatty acid profiles for characterization of bacteria
    • Soil Science Society of America, Wisconsin, USA, R.W. Weaver, S. Angle, P. Bottomley, D. Bezdicek, S. Smith, A. Tabatabai, A. Wollum (Eds.)
    • Kennedy A.C. Carbon utilization and fatty acid profiles for characterization of bacteria. Methods of Soil Analysis. Part 2: Microbiological and Biochemical Properties 1994, 546-556. Soil Science Society of America, Wisconsin, USA. R.W. Weaver, S. Angle, P. Bottomley, D. Bezdicek, S. Smith, A. Tabatabai, A. Wollum (Eds.).
    • (1994) Methods of Soil Analysis. Part 2: Microbiological and Biochemical Properties , pp. 546-556
    • Kennedy, A.C.1
  • 20
    • 37749023104 scopus 로고    scopus 로고
    • Rhizosphere microbial community and hexachlorocyclohexane degradative potential in contrasting plant species
    • Kidd P.S., Prieto-Fernández A., Monterroso C., Acea M.J. Rhizosphere microbial community and hexachlorocyclohexane degradative potential in contrasting plant species. Plant and Soil 2008, 302:233-247.
    • (2008) Plant and Soil , vol.302 , pp. 233-247
    • Kidd, P.S.1    Prieto-Fernández, A.2    Monterroso, C.3    Acea, M.J.4
  • 21
    • 34547579584 scopus 로고    scopus 로고
    • Molecular analyses reveal stability of bacterial communities in bulk soil of a Japanese paddy field: estimation by denaturing gradient gel electrophoresis of 16S rRNA genes amplified from DNA accompanied with RNA
    • Kikuchi H., Watanabe T., Jia Z., Kimura M., Asakawa S. Molecular analyses reveal stability of bacterial communities in bulk soil of a Japanese paddy field: estimation by denaturing gradient gel electrophoresis of 16S rRNA genes amplified from DNA accompanied with RNA. Soil Science and Plant Nutrition 2007, 53:448-458.
    • (2007) Soil Science and Plant Nutrition , vol.53 , pp. 448-458
    • Kikuchi, H.1    Watanabe, T.2    Jia, Z.3    Kimura, M.4    Asakawa, S.5
  • 22
    • 85103231076 scopus 로고
    • Free living dinitrogen-fixing bacteria
    • Soil Science Society of America, Wisconsin, USA, R.W. Weaver, S. Angle, P. Bottomley, D. Bezdicek, S. Smith, A. Tabatabai, A. Wollum (Eds.)
    • Knowles R., Barraquio W.L. Free living dinitrogen-fixing bacteria. Methods of Soil Analysis. Part 2: Microbiological and Biochemical Properties 1994, 179-197. Soil Science Society of America, Wisconsin, USA. R.W. Weaver, S. Angle, P. Bottomley, D. Bezdicek, S. Smith, A. Tabatabai, A. Wollum (Eds.).
    • (1994) Methods of Soil Analysis. Part 2: Microbiological and Biochemical Properties , pp. 179-197
    • Knowles, R.1    Barraquio, W.L.2
  • 23
    • 46549084881 scopus 로고    scopus 로고
    • Impact of allelochemical exuded from allelopathic rice on soil microbial community
    • Kong C.H., Wang P., Zhao H., Xu X.H., Zhu Y.D. Impact of allelochemical exuded from allelopathic rice on soil microbial community. Soil Biology & Biochemistry 2008, 40:1862-1869.
    • (2008) Soil Biology & Biochemistry , vol.40 , pp. 1862-1869
    • Kong, C.H.1    Wang, P.2    Zhao, H.3    Xu, X.H.4    Zhu, Y.D.5
  • 24
    • 0002645883 scopus 로고
    • Short-term assays of soil proteolytic enzyme activities using proteins and dipeptide derivatives as substrates
    • Ladd J.N., Butler H.A. Short-term assays of soil proteolytic enzyme activities using proteins and dipeptide derivatives as substrates. Soil Biology & Biochemistry 1972, 4:19-30.
    • (1972) Soil Biology & Biochemistry , vol.4 , pp. 19-30
    • Ladd, J.N.1    Butler, H.A.2
  • 26
    • 34748831003 scopus 로고    scopus 로고
    • Effect of organic, sustainable, and conventional management strategies in grower fields on soil physical, chemical, and biological factors and the incidence of Southern blight
    • Liu B., Tu C., Hu S., Gumpertz M., Ristaino J.B. Effect of organic, sustainable, and conventional management strategies in grower fields on soil physical, chemical, and biological factors and the incidence of Southern blight. Applied Soil Ecology 2007, 37:202-214.
    • (2007) Applied Soil Ecology , vol.37 , pp. 202-214
    • Liu, B.1    Tu, C.2    Hu, S.3    Gumpertz, M.4    Ristaino, J.B.5
  • 27
    • 33846118695 scopus 로고    scopus 로고
    • Dynamics of drinking water biofilm in flow/non-flow conditions
    • Manuel C.M., Nunes O.N., Melo L.F. Dynamics of drinking water biofilm in flow/non-flow conditions. Water Research 2007, 41:551-562.
    • (2007) Water Research , vol.41 , pp. 551-562
    • Manuel, C.M.1    Nunes, O.N.2    Melo, L.F.3
  • 29
    • 0035487280 scopus 로고    scopus 로고
    • Numerical analysis of grassland bacterial community structure under different land management regimens by using 16S ribosomal DNA sequence data and denaturing gradient gel electrophoresis banding pattern
    • McCaig A.E., Glover L.A., Prosser J.I. Numerical analysis of grassland bacterial community structure under different land management regimens by using 16S ribosomal DNA sequence data and denaturing gradient gel electrophoresis banding pattern. Applied and Environmental Microbiology 2001, 67:4554-4559.
    • (2001) Applied and Environmental Microbiology , vol.67 , pp. 4554-4559
    • McCaig, A.E.1    Glover, L.A.2    Prosser, J.I.3
  • 30
    • 46449098216 scopus 로고    scopus 로고
    • Molecular analysis of bacterial community structures in paddy soils for environmental risk assessment with two varieties of genetically modified rice, Iksan 483 and Milyang 204
    • Min-Cheol K., Jae-Hyung A., Hye-Chul S., Taesung K., Tae-Hun R., Dong-Hern K., Hong-Gyu S., Lee G.H., Ka J.O. Molecular analysis of bacterial community structures in paddy soils for environmental risk assessment with two varieties of genetically modified rice, Iksan 483 and Milyang 204. Journal of Microbiology and Biotechnology 2008, 18:207-218.
    • (2008) Journal of Microbiology and Biotechnology , vol.18 , pp. 207-218
    • Min-Cheol, K.1    Jae-Hyung, A.2    Hye-Chul, S.3    Taesung, K.4    Tae-Hun, R.5    Dong-Hern, K.6    Hong-Gyu, S.7    Lee, G.H.8    Ka, J.O.9
  • 31
    • 84901929945 scopus 로고
    • Changes in amino-acids, enzyme-activities, and biomasses during soil microbial-growth
    • Nannipieri P., Pedrazzini F., Arcara P.G., Piovanelli C. Changes in amino-acids, enzyme-activities, and biomasses during soil microbial-growth. Soil Science 1979, 127:26-34.
    • (1979) Soil Science , vol.127 , pp. 26-34
    • Nannipieri, P.1    Pedrazzini, F.2    Arcara, P.G.3    Piovanelli, C.4
  • 33
    • 0029796310 scopus 로고    scopus 로고
    • Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis
    • Nübel U., Engelen B., Felske A., Snaidr J., Wieshuber A., Amann R.I., Ludwig W., Backhaus H. Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. Journal of Bacteriology 1996, 178:5636-5643.
    • (1996) Journal of Bacteriology , vol.178 , pp. 5636-5643
    • Nübel, U.1    Engelen, B.2    Felske, A.3    Snaidr, J.4    Wieshuber, A.5    Amann, R.I.6    Ludwig, W.7    Backhaus, H.8
  • 34
    • 0009752612 scopus 로고
    • The measurement of diversity in different types of biological collections
    • Pielou E.C. The measurement of diversity in different types of biological collections. Journal of Theoretical Biology 1966, 13:131-144.
    • (1966) Journal of Theoretical Biology , vol.13 , pp. 131-144
    • Pielou, E.C.1
  • 35
    • 0027065725 scopus 로고
    • 2fixation in wetland rice fields: estimation and contribution to nitrogen balance
    • 2fixation in wetland rice fields: estimation and contribution to nitrogen balance. Plant and Soil 1992, 141:41-55.
    • (1992) Plant and Soil , vol.141 , pp. 41-55
    • Roger, P.A.1    Ladha, J.K.2
  • 36
    • 0001023096 scopus 로고
    • Xylanase-, CM-cellulase- and invertase activity in soil: an improved method
    • Schinner F., von Mersi W. Xylanase-, CM-cellulase- and invertase activity in soil: an improved method. Soil Biology & Biochemistry 1990, 22:511-515.
    • (1990) Soil Biology & Biochemistry , vol.22 , pp. 511-515
    • Schinner, F.1    von Mersi, W.2
  • 37
    • 0035528840 scopus 로고    scopus 로고
    • Biostimulation-based bioremediation of diesel fuel: field demonstration
    • Seklemova E., Pavlova A., Kovacheva K. Biostimulation-based bioremediation of diesel fuel: field demonstration. Biodegradation 2001, 12:311-316.
    • (2001) Biodegradation , vol.12 , pp. 311-316
    • Seklemova, E.1    Pavlova, A.2    Kovacheva, K.3
  • 39
    • 22044456990 scopus 로고    scopus 로고
    • Effects of nutrient and pest management on soil microorganism in hybrid rice double-annual cropping system
    • Sheng Z.L., Min L., Yong H.C., Abid S. Effects of nutrient and pest management on soil microorganism in hybrid rice double-annual cropping system. Communications in Soil Science and Plant Analysis 2005, 36:1525-1536.
    • (2005) Communications in Soil Science and Plant Analysis , vol.36 , pp. 1525-1536
    • Sheng, Z.L.1    Min, L.2    Yong, H.C.3    Abid, S.4
  • 40
    • 0030907109 scopus 로고    scopus 로고
    • Effects of organic matter application on microbial biomass and available nutrients in various types of paddy soils
    • Shibahara F., Inubushi K. Effects of organic matter application on microbial biomass and available nutrients in various types of paddy soils. Soil Science and Plant Nutrition 1997, 43:191-203.
    • (1997) Soil Science and Plant Nutrition , vol.43 , pp. 191-203
    • Shibahara, F.1    Inubushi, K.2
  • 43
    • 27944442453 scopus 로고    scopus 로고
    • Effects of organic versus conventional management on chemical and biological parameters in agriculture soils
    • van Diepeningen A., Vos O.J., Korthals G.W., van Bruggen H.C. Effects of organic versus conventional management on chemical and biological parameters in agriculture soils. Applied Soil Ecology 2006, 31:120-135.
    • (2006) Applied Soil Ecology , vol.31 , pp. 120-135
    • van Diepeningen, A.1    Vos, O.J.2    Korthals, G.W.3    van Bruggen, H.C.4
  • 44
    • 33646270862 scopus 로고    scopus 로고
    • Community structure of methanogenic archaea in paddy field soil under double cropping (rice-wheat)
    • Watanabe T., Kimura M., Asakawa S. Community structure of methanogenic archaea in paddy field soil under double cropping (rice-wheat). Soil Biology & Biochemistry 2006, 38:1264-1274.
    • (2006) Soil Biology & Biochemistry , vol.38 , pp. 1264-1274
    • Watanabe, T.1    Kimura, M.2    Asakawa, S.3
  • 45
    • 34547753462 scopus 로고    scopus 로고
    • Dynamics of methanogenic archaeal communities based on rRNA analysis and their relation to methanogenic activity in Japanese paddy field soils
    • Watanabe T., Kimura M., Asakawa S. Dynamics of methanogenic archaeal communities based on rRNA analysis and their relation to methanogenic activity in Japanese paddy field soils. Soil Biology & Biochemistry 2007, 39:2877-2887.
    • (2007) Soil Biology & Biochemistry , vol.39 , pp. 2877-2887
    • Watanabe, T.1    Kimura, M.2    Asakawa, S.3
  • 46
    • 0030613612 scopus 로고    scopus 로고
    • Localization of sulphate reduction in planted and unplanted rice field soil
    • Wind T., Conrad R. Localization of sulphate reduction in planted and unplanted rice field soil. Biogeochemistry 1997, 37:253-278.
    • (1997) Biogeochemistry , vol.37 , pp. 253-278
    • Wind, T.1    Conrad, R.2
  • 47
    • 34247882836 scopus 로고    scopus 로고
    • Long-term effects of inorganic fertilizers on microbial biomass and community functional diversity in a paddy soil derived from quaternary red clay
    • Zhong W.H., Cai Z.C. Long-term effects of inorganic fertilizers on microbial biomass and community functional diversity in a paddy soil derived from quaternary red clay. Applied Soil Ecology 2007, 36:84-91.
    • (2007) Applied Soil Ecology , vol.36 , pp. 84-91
    • Zhong, W.H.1    Cai, Z.C.2
  • 48
    • 52049118114 scopus 로고    scopus 로고
    • Microbial community diversity in the profile of an agricultural soil in northern China
    • Zhou J., Guo W., Wang R., Han X., Wang Q. Microbial community diversity in the profile of an agricultural soil in northern China. Journal of Environmental Sciences 2008, 20:981-988.
    • (2008) Journal of Environmental Sciences , vol.20 , pp. 981-988
    • Zhou, J.1    Guo, W.2    Wang, R.3    Han, X.4    Wang, Q.5


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