Evaluation of extractants and precipitants in tear film proteomic analyses

Optometry and Vision Science

Volumn 87, Issue 11, 2010, Pages 854-860

  Powell, Daniel R ^a   Thangavelu, Mirunalni ^a   Chandler, Heather L ^a   Nichols, Kelly K ^a   Nichols, Jason J ^a  

^a OHIO STATE UNIVERSITY   (United States)

Author keywords

contact lens; cornea; extractant; precipitant; proteomics; tear film

Indexed keywords

CORNEA; EXTRACTANTS; PRECIPITANT; PROTEOMICS; TEAR FILMS;

ACETONE; ACIDS; CONTACT LENSES; METABOLISM; MOLECULAR BIOLOGY; OPTICAL INSTRUMENTS; PROTEINS; UREA;

EXTRACTION;

ACETONE; ACETONITRILE; ACETONITRILE DERIVATIVE; EYE PROTEIN; LOTRAFILCON B; SILICONE DERIVATIVE; TRICHLOROACETIC ACID; TRIFLUOROACETIC ACID; UREA;

ADULT; ARTICLE; CHEMISTRY; COMPARATIVE STUDY; DRUG COMBINATION; DRUG EFFECT; EVALUATION; FEMALE; HUMAN; HYDROGEL; HYDROPHILIC CONTACT LENS; LACRIMAL FLUID; MALE; MIDDLE AGED; OSMOLARITY; PRECIPITATION; PROTEOMICS;

ACETONE; ACETONITRILES; ADULT; CHEMICAL PRECIPITATION; CONTACT LENSES, HYDROPHILIC; DRUG COMBINATIONS; EYE PROTEINS; FEMALE; HUMANS; HYDROGELS; MALE; MIDDLE AGED; OSMOLAR CONCENTRATION; PROTEOMICS; SILICONES; TEARS; TRICHLOROACETIC ACID; TRIFLUOROACETIC ACID; UREA; YOUNG ADULT;

EID: 78349307372     PISSN: 10405488     EISSN: None     Source Type: Journal    
DOI: 10.1097/OPX.0b013e3181f6fb71     Document Type: Article

References (41)

1. de Souza GA, Godoy LM, Mann M. Identification of 491 proteins in the tear fluid proteome reveals a large number of proteases and protease inhibitors. Genome Biol 2006;7:R72.
2. Jacob JT, Ham B. Compositional profiling and biomarker identification of the tear film. Ocul Surf 2008;6:175-85.
3. Green-Church KB, Nichols KK, Kleinholz NM, Zhang L, Nichols JJ. Investigation of the human tear film proteome using multiple proteomic approaches. Mol Vis 2008;14:456-70.
4. Zhou L, Beuerman RW, Chan CM, Zhao SZ, Li XR, Yang H, Tong L, Liu S, Stern ME, Tan D. Identification of tear fluid biomarkers in dry eye syndrome using iTRAQ quantitative proteomics. J Proteome Res 2009;8:4889-905.
5. Allansmith MR. Giant papillary conjunctivitis. J Am Optom Assoc 1990;61:S42-6.
6. Richard NR, Anderson JA, Tasevska ZG, Binder PS. Evaluation of tear protein deposits on contact lenses from patients with and without giant papillary conjunctivitis. CLAO J 1992;18:143-7.
7. Lever OW, Groemminger SF, Allen MA, Bornemann RH, Dey DR, Barna BJ. Evaluation of the relationship between total lens protein deposition and patient-related comfort of hydrophilic (soft) contact lenses. Int Contact Lens Clin 1995;22:5-15.
8. McEwen WK, Kimura SJ, Feeney ML. Filter-paper electrophoresis of tears. III. Human tears and their high molecular weight components. Am J Ophthalmol 1958;45:67-70.
9. Glasier MA, Keech A, Sheardown H, Subbaraman LN, Jones L. Conformational and quantitative characterization of lysozyme extracted from galyfilcon and senofilcon silicone hydrogel contact lenses. Curr Eye Res 2008;33:1-11.
10. Jones L, Senchyna M, Glasier MA, Schickler J, Forbes I, Louie D, May C. Lysozyme and lipid deposition on silicone hydrogel contact lens materials. Eye Contact Lens 2003;29:S75-9.
11. Keith DJ, Hong B, Christensen MA. A novel procedure for the extraction of protein deposits from soft hydrophilic contact lenses for analysis. Curr Eye Res 1997;16:503-10.
12. Keith DJ, Christensen MT, Barry JR, Stein JM. Determination of the lysozyme deposit curve in soft contact lenses. Eye Contact Lens 2003; 29:79-82.
13. Stapleton F, Willcox MD, Morris CA, Sweeney DF. Tear changes in contact lens wearers following overnight eye closure. Curr Eye Res 1998;17:183-8.
14. Subbaraman LN, Glasier MA, Senchyna M, Jones L. Stabilization of lysozyme mass extracted from lotrafilcon silicone hydrogel contact lenses. Optom Vis Sci 2005;82:209-14.
15. Subbaraman LN, Glasier MA, Senchyna M, Sheardown H, Jones L. Extraction efficiency of an extraction buffer used to quantify ly-sozyme deposition on conventional and silicone hydrogel contact lens materials. Eye Contact Lens 2007;33:169-73.
16. Sack RA, Jones B, Antignani A, Libow R, Harvey H. Specificity and biological activity of the protein deposited on the hydrogel surface. Relationship of polymer structure to biofilm formation. Invest Oph-thalmol Vis Sci 1987;28:842-9.
17. Maissa C, Franklin V, Guillon M, Tighe B. Influence of contact lens material surface characteristics and replacement frequency on protein and lipid deposition. Optom Vis Sci 1998;75:697-705.
18. Garrett Q, Chatelier RC, Griesser HJ, Milthorpe BK. Effect of charged groups on the adsorption and penetration of proteins onto and into carboxymethylated poly(HEMA) hydrogels. Biomaterials 1998;19:2175-86.
19. Senchyna M, Jones L, Louie D, May C, Forbes I, Glasier MA. Quantitative and conformational characterization of lysozyme deposited on balafilcon and etafilcon contact lens materials. Curr Eye Res 2004; 28:25-36.
20. Ranish J. Hahn Lab: Fred Hutchinson Cancer Research Center. Acetone Precipitation of Protein; 2007. Available at: http://labs.fhcrc.org/hahn/ Methods/biochem-meth/acetone-ppt.html. Accessed August 23, 2008.
21. Coachman K, Warfield L, Hahn S. Hahn Lab: Fred Hutchinson Cancer Research Center. Trichloroacetic Acid Protein Precipitation; 2002. Available at: http://labs.fhcrc.org/hahn/Methods/biochem-meth/tca-ppt.html. Accessed August 23, 2008.
22. Bradford MM. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 1976;72:248-54.
23. Gachon AM, Verrelle P, Betail G, Dastugue B. Immunological and electrophoretic studies of human tear proteins. Exp Eye Res 1979;29: 539-53.
24. Gachon AM, Richard J, Dastugue B. Human tears: normal protein pattern and individual protein determinations in adults. Curr Eye Res 1982;2:301-8.
25. Mii S, Nakamura K, Takeo K, Kurimoto S. Analysis of human tear proteins by two-dimensional electrophoresis. Electrophoresis 1992; 13:379-82.
26. Wollensak G, Mur E, Mayr A, Baier G, Gottinger W, Stoffler G. Effective methods for the investigation of human tear film proteins and lipids. Graefes Arch Clin Exp Ophthalmol 1990;228:78-82.
27. Meijer F, van Haeringen NJ. Separation and characteristics of glyco-proteins in tears which inhibit coating and precipitation of protein. Curr Eye Res 1993;12:531-8.
28. Manadas BJ, Vougas K, Fountoulakis M, Duarte CB. Sample soni-cation after trichloroacetic acid precipitation increases protein recovery from cultured hippocampal neurons, and improves resolution and reproducibility in two-dimensional gel electrophoresis. Electrophore-sis 2006;27:1825-31.
29. Jiang L, He L, Fountoulakis M. Comparison of protein precipitation methods for sample preparation prior to proteomic analysis. J Chro-matogr A 2004;1023:317-20.
30. Subbaraman LN, Glasier MA, Senchyna M, Sheardown H, Jones L. Kinetics of in vitro lysozyme deposition on silicone hydrogel, PMMA, and FDA groups I, II, and IV contact lens materials. Curr Eye Res 2006;31:787-96.
31. Bontempo AR, Rapp J. Protein-lipid interaction on the surface of a hydrophilic contact lens in vitro. Curr Eye Res 1997;16:776-81.
32. Bontempo AR, Rapp J. Protein and lipid deposition onto hydrophilic contact lenses in vivo. CLAO J 2001;27:75-80.
33. Mochizuki H, Yamada M, Hatou S, Kawashima M, Hata S. Deposition of lipid, protein, and secretory phospholipase A2 on hydro-philic contact lenses. Eye Contact Lens 2008;34:46-9.
34. Mok KH, Cheung RW, Wong BK, Yip KK, Lee VW. Effectiveness of no-rub contact lens cleaning on protein removal: a pilot study. Op-tom Vis Sci 2004;81:468-70.
35. Okada E, Matsuda T, Yokoyama T, Okuda K. Lysozyme penetration in group IV soft contact lenses. Eye Contact Lens 2006;32:174-7.
36. Subbaraman LN, Glasier MA, Sheardown H, Jones L. Efficacy of an extraction solvent used to quantify albumin deposition on hydrogel contact lens materials. Eye Contact Lens 2009;35:76-80.
37. Green-Church KB, Nichols JJ. Mass spectrometry-based proteomic analyses of contact lens deposition. Mol Vis 2008;14:291-7.
38. Glasier MA, Subbaraman LN, Senchyna M, Jones L. A solid-phase assay for the quantitation of total protein eluted from balafilcon, lotrafilcon, and etafilcon contact lenses. Curr Eye Res 2008;33: 631-40.
39. Suwala M, Glasier MA, Subbaraman LN, Jones L. Quantity and conformation of lysozyme deposited on conventional and silicone hydrogel contact lens materials using an in vitro model. Eye Contact Lens 2007;33:138-43.
40. Zhao Z, Carnt NA, Aliwarga Y, Wei X, Naduvilath T, Garrett Q, Korth J, Willcox MD. Care regimen and lens material influence on silicone hydrogel contact lens deposition. Optom Vis Sci 2009;86: 251-9.
41. Ng V, Cho P, To C. Tear proteins of normal young Hong Kong Chinese. Graefes Arch Clin Exp Ophthalmol 2000;238:738-45.