Frequency control of cell cycle oscillators

Current Opinion in Genetics and Development

Volumn 20, Issue 6, 2010, Pages 605-612

  Oikonomou, Catherine ^a   Cross, Frederick R ^a  

^a ROCKEFELLER UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CYCLIN DEPENDENT KINASE;

CELL CYCLE REGULATION; CELL MATURATION; CELL SIZE; CIRCADIAN RHYTHM; MOLECULAR CLOCK; NEGATIVE FEEDBACK; NONHUMAN; OSCILLATION; POSITIVE FEEDBACK; PRIORITY JOURNAL; REVIEW;

ANIMALS; CELL CYCLE; CIRCADIAN CLOCKS; GENE EXPRESSION REGULATION; HUMANS; MODELS, BIOLOGICAL;

EID: 78349305985     PISSN: 0959437X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gde.2010.08.006     Document Type: Review

References (61)

1. Tyson J.J., Chen K.C., Novak B. Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell. Curr Opin Cell Biol 2003, 15:221-231.
2. Novak B., Tyson J.J. Design principles of biochemical oscillators. Nat Rev Mol Cell Biol 2008, 9:981-991.
3. Felix M.A., Labbe J.C., Doree M., Hunt T., Karsenti E. Triggering of cyclin degradation in interphase extracts of amphibian eggs by cdc2 kinase. Nature 1990, 346:379-382.
4. Markson J.S., O'Shea E.K. The molecular clockwork of a protein-based circadian oscillator. FEBS Lett 2009, 583:3938-3947.
5. Dunlap J.C., Loros J.J., Colot H.V., Mehra A., Belden W.J., Shi M., Hong C.I., Larrondo L.F., Baker C.L., Chen C.H., et al. A circadian clock in Neurospora: how genes and proteins cooperate to produce a sustained, entrainable, and compensated biological oscillator with a period of about a day. Cold Spring Harb Symp Quant Biol 2007, 72:57-68.
6. King D.P., Takahashi J.S. Molecular genetics of circadian rhythms in mammals. Annu Rev Neurosci 2000, 23:713-742.
7. Elowitz M.B., Leibler S. A synthetic oscillatory network of transcriptional regulators. Nature 2000, 403:335-338.
8. Cross F.R. Two redundant oscillatory mechanisms in the yeast cell cycle. Dev Cell 2003, 4:741-752.
9. Sha W., Moore J., Chen K., Lassaletta A.D., Yi C.-S., Tyson J.J., Sible J.C. Hysteresis drives cell-cycle transitions in Xenopus laevis egg extracts. PNAS 2003, 100:975-980.
10. Pomerening J.R., Sontag E.D., Ferrell J.E. Building a cell cycle oscillator: hysteresis and bistability in the activation of Cdc2. Nat Cell Biol 2003, 5:346-351.
11. Tsai T.Y., Choi Y.S., Ma W., Pomerening J.R., Tang C., Ferrell J.E. Robust, tunable biological oscillations from interlinked positive and negative feedback loops. Science 2008, 321:126-129.
12. Morgan D.O. The Cell Cycle: Principles of Control 2007, New Science Press, Ltd., Oxford University Press, Sinauer Associates, Inc., London. edn 1.
13. Hartwell L.H., Weinert T.A. Checkpoints: controls that ensure the order of cell cycle events. Science 1989, 246:629-634.
14. Bean J.M., Siggia E.D., Cross F.R. Coherence and timing of cell cycle start examined at single-cell resolution. Mol Cell 2006, 21:3-14.
15. Di Talia S., Skotheim J.M., Bean J.M., Siggia E.D., Cross F.R. The effects of molecular noise and size control on variability in the budding yeast cell cycle. Nature 2007, 448:947-951.
16. Wang H., Carey L.B., Cai Y., Wijnen H., Futcher B. Recruitment of Cln3 cyclin to promoters controls cell cycle entry via histone deacetylase and other targets. PLoS Biol 2009, 7:e1000189.
17. Di Talia S., Wang H., Skotheim J.M., Rosebrock A.P., Futcher B., Cross F.R. Daughter-specific transcription factors regulate cell size control in budding yeast. PLoS Biol 2009, 7:e1000221.
18. Laabs T.L., Markwadt D.D., Slattery M.G., Newcomb L.L., Stillman D.J., Heideman W. ACE2 is required for daughter cell-specific G1 delay in Saccharomyces cerevisiae. PNAS 2003, 100:10275-10280.
19. Charvin G., Oikonomou C., Siggia E.D., Cross F.R. Origin of irreversibility of cell cycle start in budding yeast. PLoS Biol 2010, 8:e1000284.
20. Skotheim J.M., Di Talia S., Siggia E.D., Cross F.R. Positive feedback of G1 cyclins ensures coherent cell cycle entry. Nature 2008, 454:291-296.
21. Holt L.J., Krutchinsky A.N., Morgan D.O. Positive feedback sharpens the anaphase switch. Nature 2008, 454:353-357.
22. Martin S.G., Berthelot-Grosjean M. Polar gradients of the DYRK-family kinase Pom1 couple cell length with the cell cycle. Nature 2009, 459:852-856.
23. Moseley J.B., Mayeux A., Paoletti A., Nurse P. A spatial gradient coordinates cell size and mitotic entry in fission yeast. Nature 2009, 459:857-860.
24. Sveiczer A., Novak B., Mitchison J.M. The size control of fission yeast revisited. J Cell Sci 1996, 109:2947-2957.
25. Harvey S.L., Kellogg D.R. Conservation of mechanisms controlling entry into mitosis: budding yeast Wee1 delays entry into mitosis and is required for cell size control. Curr Biol 2003, 13:264-275.
26. McNulty J.J., Lew D.J. Swe1p responds to cytoskeletal perturbation, not bud size, in S. cerevisiae. Curr Biol 2005, 15:2190-2198.
27. Lee K.S., Asano S., Park J.E., Sakchaisri K., Erikson R.L. Monitoring the cell cycle by multi-kinase-dependent regulation of Swe1/Wee1 in budding yeast. Cell Cycle 2005, 4:1346-1349.
28. Bramkamp M., Emmins R., Weston L., Donovan C., Daniel R.A., Errington J. A novel component of the division-site selection system of Bacillus subtilis and a new mode of action for the division inhibitor MinCD. Mol Microbiol 2008, 70:1556-1569.
29. Patrick J.E., Kearns D.B. MinJ (YvjD) is a topological determinant of cell division in Bacillus subtilis. Mol Microbiol 2008, 70:1166-1179.
30. Bowman G.R., Comolli L.R., Zhu J., Eckart M., Koenig M., Downing K.H., Moerner W.E., Earnest T., Shapiro L. A polymeric protein anchors the chromosomal origin/ParB complex at a bacterial cell pole. Cell 2008, 134:945-955.
31. Shapiro L., McAdams H.H., Losick R. Why and how bacteria localize proteins. Science 2009, 326:1225-1228.
32. Biondi E.G., Reisinger S.J., Skerker J.M., Arif M., Perchuk B.S., Ryan K.R., Laub M.T. Regulation of the bacterial cell cycle by an integrated genetic circuit. Nature 2006, 444:899-904.
33. Chen Y.E., Tsokos C.G., Biondi E.G., Perchuk B.S., Laub M.T. Dynamics of two phosphorelays controlling cell cycle progression in Caulobacter crescentus. J Bacteriol 2009, 191:7417-7429.
34. Iniesta A.A., Hillson N.J., Shapiro L. Cell pole-specific activation of a critical bacterial cell cycle kinase. PNAS 2010, 107:7012-7017.
35. Richard P. The rhythm of yeast. FEMS Microbiol Rev 2003, 27:547-557.
36. Silverman S.J., Petti A.A., Slavov N., Parsons L., Briehof R., Thiberge S.Y., Zenklusen D., Gandhi S.J., Larson D.R., Singer R.H., et al. Metabolic cycling in single yeast cells from unsynchronized steady-state populations limited on glucose or phosphate. PNAS 2010, 107:6946-6951.
37. Klevecz R.R., Bolen J., Forrest G., Murray D.B. A genomewide oscillation in transcription gates DNA replication and cell cycle. PNAS 2004, 101:1200-1205.
38. Tu B.P., Kudlicki A., Rowicka M., McKnight S.L. Logic of the yeast metabolic cycle: temporal compartmentalization of cellular processes. Science 2005, 10:1152-1158.
39. Chen Z., Odstrcil E.A., Tu B.P., McKnight S.L. Restriction of DNA replication to the reductive phase of the metabolic cycle protects genome integrity. Science 2007, 316:1916-1919.
40. Bjarnason G.A., Jordan R.C., Wood P.A., Li Q., Lincoln D.W., Sothern R.B., Hrushesky W.J., Ben-David Y. Circadian expression of clock genes in human oral mucosa and skin: association with specific cell-cycle phases. Am J Pathol 2001, 158:1793-1801.
41. Bjarnason G.A., Jordan R. Rhythms in human gastrointestinal mucosa and skin. Chronobiol Int 2002, 19:129-140.
42. Smaaland R., Sothern R.B., Laerum O.D., Abrahamsen J.F. Rhythms in human bone marrow and blood cells. Chronobiol Int 2002, 19:101-127.
43. Dekens M.P., Santoriello C., Vallone D., Grassi G., Whitmore D., Foulkes N.S. Light regulates the cell cycle in zebrafish. Curr Biol 2003, 13:2051-2057.
44. Matsuo T., Yamaguchi S., Mitsui S., Emi A., Shimoda F., Okamura H. Control mechanism of the circadian clock for timing of cell division in vivo. Science 2003, 302:255-259.
45. Nagoshi E., Saini C., Bauer C., Laroche T., Naef F., Shibler U. Circadian gene expression in individual fibroblasts: cell-autonomous and self-sustained oscillators pass time to daughter cells. Cell 2004, 119:693-705.
46. Yang Q., Pando B.F., Dong G., Golden S.S., van Oudenaarden A. Circadian gating of the cell cycle revealed in single cyanobacterial cells. Science 2010, 327:1522-1526.
47. Dong G., Yang Q., Wang Q., Kim Y.I., Wood T.L., Osteryoung K.W., van Oudenaarden A., Golden S.S. Elevated ATPase activity of KaiC applies a circadian checkpoint on cell division in Synechococcus elongatus. Cell 2010, 140:529-539.
48. Drapkin B.J., Lu Y., Procko A.L., Timney B.L., Cross F.R. Analysis of the mitotic exit control system using locked levels of stable mitotic cyclin. Mol Syst Biol 2009, 5.
49. Sluder G., Lewis K. Relationship between nuclear DNA synthesis and centrosome reproduction in sea urchin eggs. J Exp Zool 1987, 244:89-100.
50. Sluder G., Miller F.J., Cole R., Rieder C.L. Protein synthesis and the cell cycle: centrosome reproduction in sea urchin eggs is not under translational control. J Cell Biol 1990, 110:2025-2032.
51. Gard D.L., Hafezi S., Zhang T., Doxsey S.J. Centrosome duplication continues in cycloheximide-treated Xenopus blastulae in the absence of a detectable cell cycle. J Cell Biol 1990, 110:2033-2042.
52. Haase S.B., Winey M., Reed S.I. Multi-step control of spindle pole body duplication by cyclin-dependent kinase. Nat Cell Biol 2001, 3:38-42.
53. Durcan T.M., Halpin E.S., Casaletti L., Vaughan K.T., Pierson M.R., Woods S., Hinchliffe E.H. Centrosome duplication proceeds during mimosine-induced G1 cell cycle arrest. J Cell Physiol 2008, 215:182-191.
54. McCleland M.L., O'Farrell P.H. RNAi of mitotic cyclins in Drosophila uncouples the nuclear and centrosome cycle. Curr Biol 2008, 18:245-254.
55. Haase S.B., Reed S.I. Evidence that a free-running oscillator drives G1 events in the budding yeast cell cycle. Nature 1999, 401:394-397.
56. Lu Y., Cross F.R. Periodic cyclin-Cdk activity entrains an autonomous Cdc14 release oscillator. Cell 2010, 141:268-279.
57. Orlando D.A., Lin C.Y., Bernard A., Wang J.Y., Socolar J.E.S., Iversen E.S., Hartemink A.J., Haase S.B. Global control of cell-cycle transcription by coupled CDK and network oscillators. Nature 2008, 453:944-947.
58. Thornton B.R., Toczyski D.P. Securin and B-cyclin/CDK are the only essential targets of the APC. Nat Cell Biol 2003, 5:1090-1094.
59. Lee T.I., Rinaldi N.J., Robert F., Odom D.T., Bar-Joseph Z., Gerber G.K., Hannett N.M., Harbison C.T., Thompson C.M., Simon I., et al. Transcriptional regulatory networks in Saccharomyces cerevisiae. Science 2002, 298:799-804.
60. Wittenberg C., Reed S.I. Cell cycle-dependent transcription in yeast: promoters, transcription factors, and transcriptomes. Oncogene 2005, 24:2746-2755.
61. Koch C., Moll T., Neuberg M., Ahorn H., Nasmyth K. A role for the transcription factors Mbp1 and Swi4 in progression from G1 to S phase. Science 1993, 261:1551-1557.